Wall clock time and date at job start Mon Mar 30 2020 04:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86795 * 120.00394 * 2 1 4 4 H 1.48503 * 109.47288 * 240.00265 * 3 2 1 5 5 H 1.48503 * 109.47217 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47176 * 120.00144 * 3 2 1 7 7 C 1.37878 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00019 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00029 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.46911 * 180.02562 * 9 7 2 11 11 C 1.42905 * 114.00157 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47388 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.46941 * 65.00151 * 12 11 10 14 14 C 1.50368 * 110.99780 * 170.00109 * 13 12 11 15 15 C 1.47227 * 102.18191 * 144.72803 * 14 13 12 16 16 H 1.09002 * 102.30356 * 62.90053 * 15 14 13 17 17 C 1.44121 * 140.82599 * 190.68554 * 15 14 13 18 18 O 1.21227 * 127.56918 * 339.74737 * 17 15 14 19 19 N 1.35950 * 105.55957 * 160.11585 * 17 15 14 20 20 C 1.36613 * 112.54241 * 346.67501 * 19 17 15 21 21 O 1.21233 * 127.08820 * 164.06318 * 20 19 17 22 22 C 1.50365 * 105.82424 * 344.09950 * 20 19 17 23 23 H 1.09003 * 113.54851 * 274.83435 * 22 20 19 24 24 C 1.49341 * 111.00078 * 289.89363 * 13 12 11 25 25 H 0.97001 * 120.00386 * 359.97438 * 1 2 3 26 26 H 1.08991 * 109.47368 * 60.00464 * 9 7 2 27 27 H 1.09001 * 109.46935 * 299.99515 * 9 7 2 28 28 H 1.09005 * 109.47008 * 59.99591 * 11 10 9 29 29 H 1.09003 * 109.46888 * 300.00422 * 11 10 9 30 30 H 1.09001 * 109.47225 * 304.99807 * 12 11 10 31 31 H 1.08998 * 109.46771 * 184.99861 * 12 11 10 32 32 H 1.09002 * 110.86169 * 26.55278 * 14 13 12 33 33 H 1.09002 * 111.03405 * 262.97520 * 14 13 12 34 34 H 0.96996 * 123.82180 * 166.83852 * 19 17 15 35 35 H 1.09005 * 110.23754 * 5.73383 * 24 13 12 36 36 H 1.08998 * 110.24126 * 127.63420 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5649 -4.8755 0.0000 12 6 2.6478 -5.9563 -0.0006 13 7 3.4087 -5.8877 1.2540 14 6 4.3166 -7.0776 1.3992 15 6 5.4894 -6.4934 2.0707 16 1 5.0710 -6.1594 3.0201 17 6 6.8471 -6.8167 2.4303 18 8 7.3428 -7.9184 2.5309 19 7 7.4619 -5.6230 2.6437 20 6 6.7294 -4.5666 2.1812 21 8 6.8794 -3.3959 2.4583 22 6 5.6984 -5.1552 1.2584 23 1 6.0586 -5.3023 0.2402 24 6 4.2556 -4.6585 1.2999 25 1 -0.4851 0.8400 0.0004 26 1 0.6239 -2.5567 -0.8902 27 1 0.6246 -2.5571 0.8897 28 1 0.9444 -4.9828 -0.8897 29 1 0.9450 -4.9822 0.8903 30 1 3.3207 -5.7958 -0.8430 31 1 2.1817 -6.9375 -0.0897 32 1 4.5884 -7.4799 0.4233 33 1 3.8571 -7.8468 2.0200 34 1 8.3261 -5.5302 3.0742 35 1 4.0496 -4.0262 0.4362 36 1 4.0714 -4.1079 2.2223 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388087747.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:13 Heat of formation + Delta-G solvation = -91.001589 kcal Electronic energy + Delta-G solvation = -20674.955557 eV Core-core repulsion = 17353.046747 eV Total energy + Delta-G solvation = -3321.908810 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.57298 -39.81052 -39.71104 -38.25661 -36.70835 -34.93954 -33.33758 -30.53404 -29.96759 -28.57956 -25.94803 -24.84726 -24.24648 -22.60022 -21.77235 -20.29484 -19.03058 -18.80072 -18.55808 -17.46582 -17.23282 -16.82446 -16.57515 -16.34940 -16.09615 -15.82138 -15.35338 -15.07514 -14.78513 -14.28073 -14.11181 -13.64015 -13.34376 -13.26955 -12.96708 -12.86480 -12.53485 -12.38491 -12.19096 -11.97616 -11.63411 -11.53245 -11.38794 -11.30986 -11.11700 -10.82191 -10.14304 -9.40668 -8.29266 -6.40090 0.30933 1.31330 1.40657 1.44452 1.52541 1.54355 2.23893 2.35844 2.72980 2.96254 3.05278 3.25105 3.52758 3.70664 3.85596 4.12111 4.21995 4.39822 4.45162 4.59302 4.69635 4.78299 4.81617 4.90870 4.92083 5.04299 5.09896 5.24516 5.25640 5.28198 5.58336 5.75649 5.97572 6.02866 6.06736 6.58729 6.70607 6.88079 7.31747 8.82725 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.022630 B = 0.004918 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.018238 B = 5692.025854 C = 6809.978122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.009 3.991 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.211 3.789 10 O -0.398 6.398 11 C 0.052 3.948 12 C 0.062 3.938 13 N -0.528 5.528 14 C 0.087 3.913 15 C -0.168 4.168 16 H 0.111 0.889 17 C 0.594 3.406 18 O -0.497 6.497 19 N -0.691 5.691 20 C 0.556 3.444 21 O -0.495 6.495 22 C -0.151 4.151 23 H 0.157 0.843 24 C 0.061 3.939 25 H 0.269 0.731 26 H -0.015 1.015 27 H -0.019 1.019 28 H 0.050 0.950 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.427 0.573 35 H 0.086 0.914 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.210 -15.908 2.071 19.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.190 4.190 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.136 3.864 10 O -0.318 6.318 11 C -0.025 4.025 12 C -0.066 4.066 13 N -0.253 5.253 14 C -0.039 4.039 15 C -0.190 4.190 16 H 0.128 0.872 17 C 0.384 3.616 18 O -0.369 6.369 19 N -0.360 5.360 20 C 0.344 3.656 21 O -0.365 6.365 22 C -0.173 4.173 23 H 0.175 0.825 24 C -0.067 4.067 25 H 0.078 0.922 26 H 0.003 0.997 27 H -0.001 1.001 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.139 0.861 32 H 0.101 0.899 33 H 0.134 0.866 34 H 0.268 0.732 35 H 0.105 0.895 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.038 -15.708 2.636 19.378 hybrid contribution 0.677 1.241 -0.198 1.428 sum 11.715 -14.466 2.437 18.773 Atomic orbital electron populations 1.70052 1.07651 1.28500 1.50822 1.25854 0.95831 1.03100 0.94208 0.85365 0.78188 0.77421 0.79261 1.18949 1.20117 1.19494 1.21349 0.94009 0.90878 1.51658 0.92020 1.19740 0.88615 0.84794 0.93214 1.87779 1.34625 1.14211 1.95195 1.22609 0.96126 0.84070 0.99728 1.22360 0.95308 0.98636 0.90300 1.65263 1.23511 1.00872 1.35622 1.21434 0.87933 0.93057 1.01479 1.20965 0.95259 0.98873 1.03855 0.87178 1.18138 0.86979 0.82547 0.73972 1.90810 1.73201 1.23670 1.49255 1.45803 1.24159 1.07650 1.58426 1.20894 0.81456 0.83978 0.79291 1.90835 1.68865 1.17453 1.59363 1.23850 0.96701 0.95714 1.01047 0.82534 1.22572 0.86917 0.93030 1.04138 0.92194 0.99721 1.00094 0.93152 0.94133 0.92941 0.86054 0.89934 0.86565 0.73167 0.89544 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.86 13.28 21.45 0.28 -55.57 16 2 C 0.01 0.49 5.46 84.66 0.46 0.95 16 3 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.54 -31.63 9.43 25.60 0.24 -31.38 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 9 C 0.21 11.51 5.69 71.24 0.41 11.91 16 10 O -0.40 -17.71 7.23 -148.98 -1.08 -18.79 16 11 C 0.05 1.72 6.24 71.98 0.45 2.17 16 12 C 0.06 1.42 5.24 86.30 0.45 1.88 16 13 N -0.53 -12.36 5.25 -891.23 -4.68 -17.04 16 14 C 0.09 1.35 6.44 83.82 0.54 1.89 16 15 C -0.17 -2.87 3.13 -13.51 -0.04 -2.92 16 16 H 0.11 2.04 7.23 -2.39 -0.02 2.02 16 17 C 0.59 10.70 8.14 85.55 0.70 11.39 16 18 O -0.50 -11.43 18.02 -2.87 -0.05 -11.48 16 19 N -0.69 -11.68 5.81 -429.50 -2.49 -14.18 16 20 C 0.56 12.81 8.07 87.26 0.70 13.52 16 21 O -0.49 -15.79 18.02 -2.88 -0.05 -15.84 16 22 C -0.15 -3.13 3.83 -10.01 -0.04 -3.16 16 23 H 0.16 2.60 8.14 -2.39 -0.02 2.58 16 24 C 0.06 1.73 5.50 85.71 0.47 2.20 16 25 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 26 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 27 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 28 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.16 8.06 -2.39 -0.02 1.14 16 31 H 0.12 1.94 8.09 -2.39 -0.02 1.92 16 32 H 0.08 0.99 7.86 -2.39 -0.02 0.98 16 33 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.43 5.49 8.96 -92.71 -0.83 4.66 16 35 H 0.09 3.01 5.38 -2.38 -0.01 3.00 16 36 H 0.06 2.09 8.10 -2.39 -0.02 2.07 16 Total: -1.00 -71.48 304.30 -1.43 -72.91 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 0.27 Total: 4.85 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 4.34 Total: 8.45 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -6.89 Total: -86.79 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -1.18 Total: -46.11 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -71.48 -1.43 -72.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388087747.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.093 kcal (2) G-P(sol) polarization free energy of solvation -71.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds