Wall clock time and date at job start Mon Mar 30 2020 05:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47199 * 2 1 4 4 C 1.50704 * 109.47243 * 239.99962 * 2 1 3 5 5 H 1.07997 * 120.00370 * 239.99456 * 4 2 1 6 6 C 1.37880 * 120.00035 * 60.00084 * 4 2 1 7 7 N 1.31523 * 119.99759 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00115 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47143 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47219 * 119.99571 * 8 6 4 11 11 H 1.48497 * 109.47133 * 239.99837 * 8 6 4 12 12 N 1.46893 * 109.47339 * 119.99706 * 2 1 3 13 13 C 1.46897 * 111.00490 * 275.00130 * 12 2 1 14 14 C 1.50697 * 109.47481 * 179.97438 * 13 12 2 15 15 N 1.30298 * 126.33588 * 90.02775 * 14 13 12 16 16 N 1.28527 * 110.07502 * 179.97438 * 15 14 13 17 17 C 1.31289 * 109.86002 * 359.97438 * 16 15 14 18 18 S 1.76196 * 126.48814 * 180.02562 * 17 16 15 19 19 N 1.36538 * 107.02665 * 359.77303 * 17 16 15 20 20 C 1.46502 * 127.14021 * 180.22996 * 19 17 16 21 21 C 1.52999 * 117.50022 * 16.93429 * 20 19 17 22 22 C 1.52991 * 117.50029 * 308.27391 * 20 19 17 23 23 H 1.08999 * 109.47217 * 300.00048 * 1 2 3 24 24 H 1.09003 * 109.46917 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47363 * 60.00230 * 1 2 3 26 26 H 0.96999 * 119.99650 * 180.02562 * 7 6 4 27 27 H 1.00907 * 110.99917 * 38.95915 * 12 2 1 28 28 H 1.08999 * 109.47383 * 300.00248 * 13 12 2 29 29 H 1.09001 * 109.46722 * 59.99699 * 13 12 2 30 30 H 1.40995 * 100.00247 * 89.97367 * 18 17 16 31 31 H 1.09005 * 115.54654 * 162.60748 * 20 19 17 32 32 H 1.09003 * 117.49775 * 0.02562 * 21 20 19 33 33 H 1.09000 * 117.49430 * 145.01757 * 21 20 19 34 34 H 1.09006 * 117.50172 * 214.98036 * 22 20 19 35 35 H 1.09004 * 117.49774 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1485 -2.2856 -3.6038 10 1 1.1679 -1.5867 -4.8165 11 1 3.1472 -0.1857 -4.8160 12 7 2.0197 -0.6924 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5874 -0.5217 3.5560 15 7 3.8320 -0.6495 3.9198 16 7 3.9073 -1.3454 4.9977 17 6 2.7040 -1.7019 5.3834 18 16 2.3009 -2.6625 6.8044 19 7 1.8237 -1.1826 4.4781 20 6 0.3643 -1.3100 4.4901 21 6 -0.2960 -1.7461 5.7996 22 6 -0.2209 -2.7176 4.6191 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 0.7081 1.1608 -3.4844 27 1 1.4496 -1.4979 1.4100 28 1 2.7588 1.0463 2.1182 29 1 1.0871 0.6163 2.5525 30 1 2.1439 -1.6356 7.7577 31 1 -0.1750 -0.5957 3.8679 32 1 0.3554 -1.9379 6.6522 33 1 -1.2700 -1.3190 6.0387 34 1 -1.1456 -2.9294 4.0821 35 1 0.4799 -3.5491 4.6945 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390497089.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:36 Heat of formation + Delta-G solvation = 122.125095 kcal Electronic energy + Delta-G solvation = -18279.417841 eV Core-core repulsion = 15441.796520 eV Total energy + Delta-G solvation = -2837.621322 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.96010 -37.89430 -36.34002 -33.21272 -32.56435 -30.99077 -28.49961 -25.40917 -24.97003 -24.23195 -22.96080 -21.92367 -20.66512 -20.35224 -18.45395 -17.17978 -16.43119 -16.13829 -15.53177 -15.04016 -14.85522 -14.31215 -14.17406 -13.65971 -13.23455 -12.65492 -12.16065 -12.09166 -11.91647 -11.75806 -11.61840 -11.45576 -11.08910 -10.99308 -10.86102 -10.63683 -10.44507 -10.25309 -10.01925 -9.76937 -9.21961 -9.08911 -8.42081 -8.30603 -7.47086 -6.04572 -4.07546 0.76420 1.22959 2.11022 2.36581 2.87559 3.30404 3.38022 3.38620 3.44938 4.05976 4.36266 4.43386 4.46217 4.52023 4.88233 5.17416 5.24291 5.27901 5.28727 5.47332 5.59173 5.73581 5.85888 5.90128 6.01724 6.50726 6.65461 6.68099 6.91365 7.15284 7.60076 7.79290 8.12418 8.31937 8.45971 8.63385 8.99854 9.58151 11.02666 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.030893 B = 0.004409 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.122649 B = 6348.962991 C = 6700.956914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.213 3.787 3 H 0.039 0.961 4 C -0.495 4.495 5 H 0.065 0.935 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.671 5.671 13 C 0.142 3.858 14 C 0.231 3.769 15 N -0.276 5.276 16 N -0.238 5.238 17 C 0.124 3.876 18 S -0.003 6.003 19 N -0.430 5.430 20 C 0.044 3.956 21 C -0.190 4.190 22 C -0.160 4.160 23 H 0.003 0.997 24 H 0.029 0.971 25 H 0.093 0.907 26 H 0.260 0.740 27 H 0.327 0.673 28 H 0.106 0.894 29 H 0.041 0.959 30 H 0.099 0.901 31 H 0.149 0.851 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.883 -4.234 17.849 19.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.106 3.894 3 H 0.057 0.943 4 C -0.533 4.533 5 H 0.083 0.917 6 C -0.144 4.144 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.302 5.302 13 C 0.010 3.990 14 C -0.038 4.038 15 N -0.119 5.119 16 N -0.082 5.082 17 C -0.250 4.250 18 S 0.148 5.852 19 N -0.122 5.122 20 C -0.060 4.060 21 C -0.229 4.229 22 C -0.198 4.198 23 H 0.022 0.978 24 H 0.048 0.952 25 H 0.111 0.889 26 H 0.070 0.930 27 H 0.143 0.857 28 H 0.124 0.876 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.166 0.834 32 H 0.140 0.860 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.949 -4.571 18.118 19.099 hybrid contribution -1.977 0.850 -0.921 2.341 sum -5.926 -3.721 17.197 18.566 Atomic orbital electron populations 1.22461 1.00467 0.99338 1.00647 1.19251 0.89666 0.94696 0.85824 0.94295 1.21146 1.30291 1.12596 0.89301 0.91717 1.24932 0.95237 0.95174 0.99083 1.69880 1.37298 1.23191 1.23399 0.86420 0.78517 0.79728 0.82647 1.19656 1.21209 1.21042 1.60849 1.58586 1.08514 1.02277 1.20425 0.99070 0.94713 0.84827 1.25576 0.87477 0.96715 0.94002 1.74221 1.15534 1.15180 1.06924 1.74777 1.17663 1.09111 1.06694 1.25636 0.89204 1.09391 1.00753 1.86826 1.89664 1.08837 0.99836 1.46411 1.07366 1.38498 1.19909 1.22142 0.76543 1.02267 1.05093 1.24229 1.02970 1.02377 0.93370 1.23441 1.03299 0.92208 1.00843 0.97758 0.95176 0.88883 0.93039 0.85689 0.87593 0.94108 0.93652 0.83363 0.85960 0.87296 0.86761 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.75 8.94 37.16 0.33 -3.42 16 2 C 0.21 5.07 2.57 -68.87 -0.18 4.89 16 3 H 0.04 1.01 7.80 -51.93 -0.40 0.61 16 4 C -0.49 -13.38 8.84 -34.44 -0.30 -13.69 16 5 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 6 C 0.06 1.53 5.30 -17.81 -0.09 1.43 16 7 N -0.90 -24.92 11.32 55.43 0.63 -24.29 16 8 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.67 -13.80 6.22 -109.23 -0.68 -14.48 16 13 C 0.14 2.46 5.85 -4.98 -0.03 2.43 16 14 C 0.23 3.96 7.58 -154.00 -1.17 2.80 16 15 N -0.28 -5.40 12.18 32.99 0.40 -5.00 16 16 N -0.24 -4.33 12.23 30.68 0.38 -3.95 16 17 C 0.12 1.84 8.18 -88.33 -0.72 1.11 16 18 S 0.00 -0.03 21.86 -107.50 -2.35 -2.38 16 19 N -0.43 -6.14 3.16 -106.47 -0.34 -6.48 16 20 C 0.04 0.47 6.72 -67.93 -0.46 0.01 16 21 C -0.19 -1.47 9.71 -26.70 -0.26 -1.73 16 22 C -0.16 -1.40 10.01 -26.70 -0.27 -1.67 16 23 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 24 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 25 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.33 6.38 8.46 -39.29 -0.33 6.05 16 28 H 0.11 1.90 8.06 -51.93 -0.42 1.48 16 29 H 0.04 0.63 6.66 -51.93 -0.35 0.28 16 30 H 0.10 0.78 9.42 96.90 0.91 1.69 16 31 H 0.15 1.47 7.39 -51.93 -0.38 1.08 16 32 H 0.12 0.94 4.30 -28.53 -0.12 0.82 16 33 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.11 1.05 7.88 -51.93 -0.41 0.64 16 LS Contribution 305.57 15.07 4.60 4.60 Total: -1.00 -30.55 305.57 -8.54 -39.09 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -3.02 Total: 4.46 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -3.15 Total: -7.83 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.39 Total: -54.20 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.35 Total: -2.38 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.55 -8.54 -39.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390497089.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.217 kcal (2) G-P(sol) polarization free energy of solvation -30.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds