Wall clock time and date at job start Mon Mar 30 2020 05:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47199 * 2 1 4 4 C 1.50704 * 109.47243 * 239.99962 * 2 1 3 5 5 H 1.07997 * 120.00370 * 239.99456 * 4 2 1 6 6 C 1.37880 * 120.00035 * 60.00084 * 4 2 1 7 7 N 1.31523 * 119.99759 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00115 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47143 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47219 * 119.99571 * 8 6 4 11 11 H 1.48497 * 109.47133 * 239.99837 * 8 6 4 12 12 N 1.46893 * 109.47339 * 119.99706 * 2 1 3 13 13 C 1.46897 * 111.00490 * 275.00130 * 12 2 1 14 14 C 1.50697 * 109.47481 * 179.97438 * 13 12 2 15 15 N 1.30298 * 126.33588 * 90.02775 * 14 13 12 16 16 N 1.28527 * 110.07502 * 179.97438 * 15 14 13 17 17 C 1.31289 * 109.86002 * 359.97438 * 16 15 14 18 18 S 1.76196 * 126.48814 * 180.02562 * 17 16 15 19 19 N 1.36538 * 107.02665 * 359.77303 * 17 16 15 20 20 C 1.46502 * 127.14021 * 180.22996 * 19 17 16 21 21 C 1.52999 * 117.50022 * 16.93429 * 20 19 17 22 22 C 1.52991 * 117.50029 * 308.27391 * 20 19 17 23 23 H 1.08999 * 109.47217 * 300.00048 * 1 2 3 24 24 H 1.09003 * 109.46917 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47363 * 60.00230 * 1 2 3 26 26 H 0.96999 * 119.99650 * 180.02562 * 7 6 4 27 27 H 1.00907 * 110.99917 * 38.95915 * 12 2 1 28 28 H 1.08999 * 109.47383 * 300.00248 * 13 12 2 29 29 H 1.09001 * 109.46722 * 59.99699 * 13 12 2 30 30 H 1.40995 * 100.00247 * 89.97367 * 18 17 16 31 31 H 1.09005 * 115.54654 * 162.60748 * 20 19 17 32 32 H 1.09003 * 117.49775 * 0.02562 * 21 20 19 33 33 H 1.09000 * 117.49430 * 145.01757 * 21 20 19 34 34 H 1.09006 * 117.50172 * 214.98036 * 22 20 19 35 35 H 1.09004 * 117.49774 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1485 -2.2856 -3.6038 10 1 1.1679 -1.5867 -4.8165 11 1 3.1472 -0.1857 -4.8160 12 7 2.0197 -0.6924 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5874 -0.5217 3.5560 15 7 3.8320 -0.6495 3.9198 16 7 3.9073 -1.3454 4.9977 17 6 2.7040 -1.7019 5.3834 18 16 2.3009 -2.6625 6.8044 19 7 1.8237 -1.1826 4.4781 20 6 0.3643 -1.3100 4.4901 21 6 -0.2960 -1.7461 5.7996 22 6 -0.2209 -2.7176 4.6191 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 0.7081 1.1608 -3.4844 27 1 1.4496 -1.4979 1.4100 28 1 2.7588 1.0463 2.1182 29 1 1.0871 0.6163 2.5525 30 1 2.1439 -1.6356 7.7577 31 1 -0.1750 -0.5957 3.8679 32 1 0.3554 -1.9379 6.6522 33 1 -1.2700 -1.3190 6.0387 34 1 -1.1456 -2.9294 4.0821 35 1 0.4799 -3.5491 4.6945 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390497089.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:35 Heat of formation + Delta-G solvation = 102.154881 kcal Electronic energy + Delta-G solvation = -18280.283815 eV Core-core repulsion = 15441.796520 eV Total energy + Delta-G solvation = -2838.487295 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.15791 -38.72172 -38.02759 -34.90430 -33.82190 -32.51667 -30.12068 -27.26988 -26.52278 -25.35086 -23.66764 -22.95645 -22.23824 -21.78354 -19.40827 -18.49553 -18.03135 -17.32780 -16.80184 -16.55405 -16.10242 -15.56260 -15.46428 -15.06716 -14.52435 -14.27347 -13.62569 -13.48613 -13.07290 -12.91861 -12.84638 -12.78202 -12.63636 -12.45963 -12.41322 -12.17034 -11.99046 -11.88751 -11.49980 -11.08585 -10.68504 -10.48212 -10.44439 -9.11875 -9.09288 -8.10584 -6.20380 -0.18072 0.14658 1.18853 1.33787 1.41967 1.45287 1.56780 1.69983 2.44818 2.66799 3.02579 3.18784 3.37845 3.61131 3.69676 3.75880 3.86368 4.19433 4.34595 4.55670 4.69374 4.69777 4.76342 4.82653 4.89417 5.01054 5.04699 5.13780 5.36669 5.58573 5.70427 5.79500 6.23969 6.54613 6.65541 6.91242 7.38379 7.49088 8.94850 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.030893 B = 0.004409 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.122649 B = 6348.962991 C = 6700.956914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.219 3.781 3 H 0.012 0.988 4 C -0.516 4.516 5 H 0.048 0.952 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.956 3.044 9 H -0.274 1.274 10 H -0.277 1.277 11 H -0.282 1.282 12 N -0.681 5.681 13 C 0.151 3.849 14 C 0.217 3.783 15 N -0.317 5.317 16 N -0.281 5.281 17 C 0.132 3.868 18 S 0.022 5.978 19 N -0.420 5.420 20 C 0.008 3.992 21 C -0.165 4.165 22 C -0.156 4.156 23 H 0.035 0.965 24 H 0.034 0.966 25 H 0.064 0.936 26 H 0.262 0.738 27 H 0.333 0.667 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.128 0.872 31 H 0.156 0.844 32 H 0.124 0.876 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 -5.102 19.379 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.111 3.889 3 H 0.030 0.970 4 C -0.554 4.554 5 H 0.067 0.933 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.782 3.218 9 H -0.199 1.199 10 H -0.203 1.203 11 H -0.208 1.208 12 N -0.312 5.312 13 C 0.020 3.980 14 C -0.052 4.052 15 N -0.159 5.159 16 N -0.125 5.125 17 C -0.244 4.244 18 S 0.172 5.828 19 N -0.111 5.111 20 C -0.095 4.095 21 C -0.204 4.204 22 C -0.194 4.194 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.150 0.850 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.174 0.826 32 H 0.142 0.858 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.711 -5.441 19.661 21.184 hybrid contribution -1.475 1.077 -1.234 2.204 sum -7.186 -4.363 18.427 20.254 Atomic orbital electron populations 1.22224 0.98904 0.99619 1.00709 1.18985 0.90717 0.92955 0.86248 0.97008 1.21413 1.30453 1.12461 0.91120 0.93321 1.25594 0.95424 0.95832 1.01520 1.69983 1.37839 1.23990 1.23992 0.85537 0.78121 0.78557 0.79560 1.19897 1.20290 1.20834 1.60609 1.58786 1.09199 1.02656 1.20259 1.00088 0.93764 0.83923 1.25277 0.87468 0.97883 0.94611 1.74084 1.17268 1.16486 1.08099 1.74683 1.19782 1.10848 1.07199 1.26354 0.88530 1.07853 1.01633 1.86747 1.89089 1.08733 0.98209 1.46560 1.08762 1.37091 1.18681 1.22622 0.74502 1.04127 1.08207 1.24345 1.03573 1.00390 0.92054 1.23531 1.03411 0.90818 1.01592 0.94614 0.94665 0.91758 0.92906 0.84968 0.88903 0.91515 0.90783 0.82642 0.85845 0.84546 0.84935 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.74 8.94 71.98 0.64 -6.10 16 2 C 0.22 10.54 2.57 44.17 0.11 10.65 16 3 H 0.01 0.64 7.80 -2.39 -0.02 0.62 16 4 C -0.52 -28.32 8.84 25.60 0.23 -28.09 16 5 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 6 C 0.01 0.81 5.30 84.65 0.45 1.26 16 7 N -0.92 -51.26 11.32 21.45 0.24 -51.02 16 8 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 9 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 N -0.68 -28.16 6.22 -499.50 -3.11 -31.27 16 13 C 0.15 5.25 5.85 85.56 0.50 5.75 16 14 C 0.22 7.49 7.58 137.63 1.04 8.53 16 15 N -0.32 -12.71 12.18 -49.53 -0.60 -13.31 16 16 N -0.28 -10.32 12.23 -56.85 -0.70 -11.01 16 17 C 0.13 3.75 8.18 179.55 1.47 5.21 16 18 S 0.02 0.38 21.86 -56.49 -1.23 -0.85 16 19 N -0.42 -11.50 3.16 -490.76 -1.55 -13.05 16 20 C 0.01 0.16 6.72 44.99 0.30 0.46 16 21 C -0.16 -1.92 9.71 30.62 0.30 -1.62 16 22 C -0.16 -2.25 10.01 30.61 0.31 -1.95 16 23 H 0.03 1.28 7.45 -2.39 -0.02 1.27 16 24 H 0.03 1.45 8.13 -2.39 -0.02 1.43 16 25 H 0.06 3.20 6.07 -2.38 -0.01 3.19 16 26 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 27 H 0.33 12.89 8.46 -89.69 -0.76 12.13 16 28 H 0.09 3.43 8.06 -2.39 -0.02 3.41 16 29 H 0.07 1.95 6.66 -2.39 -0.02 1.94 16 30 H 0.13 1.54 9.42 73.80 0.70 2.23 16 31 H 0.16 2.64 7.39 -2.38 -0.02 2.63 16 32 H 0.12 1.42 4.30 -17.26 -0.07 1.34 16 33 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.10 1.67 7.88 -2.39 -0.02 1.65 16 Total: -1.00 -67.46 305.57 1.44 -66.02 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 1.01 Total: 14.50 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 5.35 Total: -5.89 kcal Atomic # 7 Polarization: -113.95 SS G_CDS: -5.71 Total: -119.66 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -1.23 Total: -0.85 kcal Total: -67.46 1.44 -66.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390497089.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.177 kcal (2) G-P(sol) polarization free energy of solvation -67.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds