Wall clock time and date at job start Mon Mar 30 2020 05:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34868 * 117.00194 * 2 1 4 4 N 1.31537 * 119.39508 * 359.97438 * 3 2 1 5 5 C 1.33213 * 121.38949 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.96157 * 179.97438 * 5 4 3 7 7 C 1.36386 * 120.07345 * 359.97438 * 5 4 3 8 8 C 1.40702 * 118.83431 * 0.06671 * 7 5 4 9 9 O 1.22002 * 120.64972 * 179.97438 * 8 7 5 10 10 N 1.35016 * 118.69661 * 359.93485 * 8 7 5 11 11 C 1.46501 * 120.10373 * 180.30075 * 10 8 7 12 12 C 1.53008 * 109.46940 * 269.72671 * 11 10 8 13 13 O 1.42891 * 109.47260 * 64.99495 * 12 11 10 14 14 C 1.42899 * 114.00145 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.47373 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99798 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99586 * 179.97438 * 15 14 13 18 18 N 1.31521 * 119.99380 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00599 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.47020 * 90.00019 * 19 17 15 21 21 H 1.48499 * 109.47078 * 210.00166 * 19 17 15 22 22 H 1.48493 * 109.46984 * 329.99986 * 19 17 15 23 23 H 1.08996 * 109.47344 * 59.99837 * 1 2 3 24 24 H 1.08997 * 109.47416 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47089 * 299.99561 * 1 2 3 26 26 H 1.08995 * 109.47856 * 359.97438 * 6 5 4 27 27 H 1.09001 * 109.47135 * 120.00291 * 6 5 4 28 28 H 1.09010 * 109.47176 * 239.99741 * 6 5 4 29 29 H 1.07994 * 120.58614 * 180.02562 * 7 5 4 30 30 H 1.08999 * 109.46946 * 29.71579 * 11 10 8 31 31 H 1.08996 * 109.47659 * 149.72803 * 11 10 8 32 32 H 1.09004 * 109.47292 * 184.99834 * 12 11 10 33 33 H 1.09006 * 109.46531 * 304.99484 * 12 11 10 34 34 H 1.09007 * 109.46915 * 299.99875 * 14 13 12 35 35 H 1.08996 * 109.47554 * 59.99993 * 14 13 12 36 36 H 0.97002 * 119.99780 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 7 1.3363 2.2972 -0.0005 5 6 1.8994 3.5045 -0.0010 6 6 1.0344 4.7385 -0.0022 7 6 3.2580 3.6249 -0.0005 8 6 4.0427 2.4571 -0.0009 9 8 5.2608 2.5262 -0.0009 10 7 3.4213 1.2584 -0.0004 11 6 4.2083 0.0227 0.0059 12 6 4.4823 -0.4148 -1.4344 13 8 5.3090 0.5568 -2.0783 14 6 5.6257 0.2425 -3.4358 15 6 6.4972 1.3283 -4.0127 16 1 6.7804 2.1740 -3.4036 17 6 6.9327 1.2420 -5.3180 18 7 7.6928 2.1898 -5.8215 19 14 6.4433 -0.2211 -6.3712 20 1 5.1720 0.0801 -7.0768 21 1 7.5103 -0.4926 -7.3677 22 1 6.2588 -1.4140 -5.5063 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.0156 4.4462 -0.0029 27 1 1.2462 5.3315 0.8875 28 1 1.2470 5.3304 -0.8925 29 1 3.7232 4.5995 -0.0005 30 1 5.1542 0.1971 0.5187 31 1 3.6529 -0.7592 0.5237 32 1 4.9904 -1.3791 -1.4309 33 1 3.5387 -0.5032 -1.9729 34 1 6.1574 -0.7083 -3.4741 35 1 4.7058 0.1680 -4.0157 36 1 7.9996 2.1289 -6.7397 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395348610.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:01 Heat of formation + Delta-G solvation = -95.648719 kcal Electronic energy + Delta-G solvation = -20867.690268 eV Core-core repulsion = 17545.579943 eV Total energy + Delta-G solvation = -3322.110325 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 7.11 seconds Orbital eigenvalues (eV) -42.95010 -40.03788 -38.93143 -38.18089 -36.61746 -34.90481 -32.48089 -31.58238 -30.03480 -29.00658 -28.37601 -24.91129 -24.38329 -23.92932 -22.95173 -19.74554 -19.41054 -19.13470 -18.45748 -17.82003 -17.45841 -16.60601 -16.38454 -16.22613 -16.06250 -15.83661 -15.11177 -14.95456 -14.69192 -14.37874 -14.11083 -13.78094 -13.55037 -13.38144 -13.18424 -12.91034 -12.79699 -12.72908 -12.58259 -11.94225 -11.86411 -11.46729 -11.42049 -11.11837 -11.01204 -10.96193 -10.45487 -9.35464 -8.41383 -6.50823 -0.30263 0.73356 0.83559 1.27539 1.32828 1.43814 2.17547 2.25293 2.53345 2.89898 2.93492 2.97129 3.56075 3.90055 3.93195 4.09407 4.27784 4.37414 4.41460 4.44829 4.47574 4.48188 4.61264 4.70675 4.77868 4.80370 4.87835 4.89783 4.91518 5.29529 5.36713 5.53548 5.87884 5.90256 6.53708 6.65495 6.68024 6.84591 7.13298 8.76862 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020409 B = 0.005433 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.583616 B = 5152.052489 C = 5597.601541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.307 6.307 3 C 0.574 3.426 4 N -0.586 5.586 5 C 0.221 3.779 6 C -0.101 4.101 7 C -0.359 4.359 8 C 0.523 3.477 9 O -0.564 6.564 10 N -0.512 5.512 11 C 0.096 3.904 12 C 0.033 3.967 13 O -0.401 6.401 14 C 0.182 3.818 15 C -0.549 4.549 16 H 0.016 0.984 17 C 0.010 3.990 18 N -0.944 5.944 19 Si 0.964 3.036 20 H -0.258 1.258 21 H -0.269 1.269 22 H -0.242 1.242 23 H 0.070 0.930 24 H 0.140 0.860 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.153 0.847 30 H 0.092 0.908 31 H 0.155 0.845 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.018 0.982 35 H 0.008 0.992 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.855 -6.556 13.664 26.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.207 6.207 3 C 0.276 3.724 4 N -0.329 5.329 5 C 0.100 3.900 6 C -0.158 4.158 7 C -0.384 4.384 8 C 0.325 3.675 9 O -0.443 6.443 10 N -0.239 5.239 11 C -0.025 4.025 12 C -0.045 4.045 13 O -0.320 6.320 14 C 0.106 3.894 15 C -0.587 4.587 16 H 0.034 0.966 17 C -0.187 4.187 18 N -0.583 5.583 19 Si 0.784 3.216 20 H -0.183 1.183 21 H -0.194 1.194 22 H -0.165 1.165 23 H 0.089 0.911 24 H 0.158 0.842 25 H 0.099 0.901 26 H 0.114 0.886 27 H 0.123 0.877 28 H 0.112 0.888 29 H 0.171 0.829 30 H 0.111 0.889 31 H 0.173 0.827 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.036 0.964 35 H 0.025 0.975 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.645 -6.551 13.613 26.395 hybrid contribution 1.261 -0.067 -0.777 1.482 sum -20.384 -6.618 12.836 24.981 Atomic orbital electron populations 1.23847 0.70556 1.06231 1.04181 1.86329 1.27574 1.21193 1.85640 1.20715 0.80056 0.87709 0.83945 1.68296 1.34931 0.96917 1.32790 1.21358 0.91522 0.93162 0.84008 1.20909 0.99218 0.90832 1.04807 1.22475 0.94996 0.98624 1.22338 1.17516 0.88609 0.83284 0.78062 1.90982 1.14973 1.85496 1.52851 1.46525 1.05186 1.11167 1.60987 1.22241 0.97966 0.85073 0.97207 1.23044 0.95026 0.93460 0.92930 1.88081 1.69767 1.47384 1.26793 1.20305 0.93926 0.95327 0.79822 1.21135 1.32149 1.07313 0.98060 0.96552 1.25965 0.93958 1.00304 0.98506 1.70065 1.36064 1.35846 1.16293 0.85502 0.79037 0.78747 0.78344 1.18251 1.19417 1.16516 0.91095 0.84181 0.90090 0.88625 0.87666 0.88831 0.82927 0.88934 0.82731 0.89468 0.92750 0.96389 0.97456 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.47 113.37 1.19 1.64 16 2 O -0.31 -5.83 9.38 -81.35 -0.76 -6.59 16 3 C 0.57 15.22 8.26 179.71 1.48 16.70 16 4 N -0.59 -14.72 9.13 -301.69 -2.75 -17.47 16 5 C 0.22 5.77 6.77 41.92 0.28 6.06 16 6 C -0.10 -1.61 10.16 71.24 0.72 -0.88 16 7 C -0.36 -12.24 9.72 22.44 0.22 -12.02 16 8 C 0.52 21.64 7.06 84.81 0.60 22.24 16 9 O -0.56 -29.30 16.05 0.40 0.01 -29.29 16 10 N -0.51 -17.05 2.58 -767.00 -1.98 -19.03 16 11 C 0.10 2.86 5.59 86.38 0.48 3.34 16 12 C 0.03 1.14 6.28 71.98 0.45 1.59 16 13 O -0.40 -20.53 9.17 -143.26 -1.31 -21.85 16 14 C 0.18 9.77 4.76 71.24 0.34 10.11 16 15 C -0.55 -36.21 9.99 25.60 0.26 -35.96 16 16 H 0.02 1.24 8.06 -2.91 -0.02 1.22 16 17 C 0.01 0.64 5.47 84.65 0.46 1.10 16 18 N -0.94 -62.43 13.96 21.45 0.30 -62.13 16 19 Si 0.96 44.88 27.47 68.60 1.88 46.77 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 23 H 0.07 0.79 8.11 -2.39 -0.02 0.77 16 24 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.08 0.71 8.11 -2.38 -0.02 0.69 16 26 H 0.09 1.22 8.11 -2.39 -0.02 1.20 16 27 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.15 4.98 8.06 -2.91 -0.02 4.96 16 30 H 0.09 3.09 7.45 -2.39 -0.02 3.07 16 31 H 0.16 2.92 7.38 -2.39 -0.02 2.90 16 32 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.02 0.92 7.20 -2.38 -0.02 0.90 16 35 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16 36 H 0.27 16.47 8.31 -92.71 -0.77 15.70 16 Total: -1.00 -90.84 312.08 2.89 -87.95 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 1.02 Total: 7.71 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 6.49 Total: 13.93 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -4.43 Total: -98.63 kcal Atomic # 8 Polarization: -55.66 SS G_CDS: -2.07 Total: -57.73 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.77 kcal Total: -90.84 2.89 -87.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395348610.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.701 kcal (2) G-P(sol) polarization free energy of solvation -90.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.11 seconds