Wall clock time and date at job start Mon Mar 30 2020 04:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 119.99739 * 2 1 4 4 H 1.48497 * 109.47279 * 269.99781 * 3 2 1 5 5 H 1.48502 * 109.47457 * 30.00134 * 3 2 1 6 6 H 1.48504 * 109.47228 * 150.00121 * 3 2 1 7 7 C 1.37878 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99640 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00001 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47559 * 300.00226 * 9 7 2 11 11 O 1.42901 * 109.47394 * 60.00461 * 9 7 2 12 12 C 1.53004 * 109.47177 * 180.02562 * 9 7 2 13 13 C 1.50698 * 109.47352 * 175.00096 * 12 9 7 14 14 N 1.31126 * 126.54940 * 89.99545 * 13 12 9 15 15 C 1.34500 * 105.61416 * 179.97438 * 14 13 12 16 16 C 1.50706 * 126.28673 * 179.97438 * 15 14 13 17 17 O 1.42898 * 109.46968 * 89.99927 * 16 15 14 18 18 C 1.42901 * 113.99770 * 179.97438 * 17 16 15 19 19 C 1.52996 * 109.47225 * 179.97438 * 18 17 16 20 20 C 1.53002 * 117.49888 * 116.25615 * 19 18 17 21 21 C 1.53000 * 117.50107 * 184.91377 * 19 18 17 22 22 N 1.29947 * 107.42056 * 0.24258 * 15 14 13 23 23 O 1.21295 * 110.25084 * 359.58139 * 22 15 14 24 24 H 0.96998 * 120.00161 * 0.02562 * 1 2 3 25 25 H 0.96698 * 113.99461 * 59.99307 * 11 9 7 26 26 H 1.08994 * 109.47137 * 54.99753 * 12 9 7 27 27 H 1.09003 * 109.46624 * 295.00317 * 12 9 7 28 28 H 1.09001 * 109.47101 * 329.99743 * 16 15 14 29 29 H 1.08999 * 109.46706 * 209.99947 * 16 15 14 30 30 H 1.09002 * 109.47068 * 59.99802 * 18 17 16 31 31 H 1.09004 * 109.47201 * 300.00284 * 18 17 16 32 32 H 1.09002 * 115.54951 * 330.58589 * 19 18 17 33 33 H 1.09000 * 117.49996 * 215.00804 * 20 19 18 34 34 H 1.08999 * 117.49664 * 0.02562 * 20 19 18 35 35 H 1.09008 * 117.49673 * 359.97438 * 21 19 18 36 36 H 1.08999 * 117.49959 * 144.99502 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 0.4291 -2.5747 -1.1670 12 6 2.2453 -3.6621 -0.0005 13 6 1.4959 -4.9637 0.1233 14 7 1.0378 -5.6977 -0.8620 15 6 0.4455 -6.7558 -0.2800 16 6 -0.2389 -7.8962 -0.9887 17 8 0.7103 -8.9312 -1.2529 18 6 0.1608 -10.0659 -1.9256 19 6 1.2606 -11.1043 -2.1559 20 6 1.1128 -12.4569 -1.4563 21 6 0.8980 -12.3492 -2.9680 22 7 0.5668 -6.6112 1.0057 23 8 1.1718 -5.5906 1.2581 24 1 -0.4850 0.8400 -0.0004 25 1 0.9210 -2.5291 -1.9983 26 1 2.9294 -3.5552 0.8412 27 1 2.8115 -3.6559 -0.9319 28 1 -0.6591 -7.5398 -1.9292 29 1 -1.0379 -8.2880 -0.3592 30 1 -0.2513 -9.7548 -2.8855 31 1 -0.6297 -10.5026 -1.3152 32 1 2.2681 -10.7044 -2.2706 33 1 2.0230 -12.9469 -1.1106 34 1 0.2318 -12.6071 -0.8323 35 1 -0.1243 -12.4287 -3.3379 36 1 1.6669 -12.7684 -3.6170 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395587478.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:39 Heat of formation + Delta-G solvation = -30.787862 kcal Electronic energy + Delta-G solvation = -19614.010448 eV Core-core repulsion = 16294.712701 eV Total energy + Delta-G solvation = -3319.297747 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -46.61753 -39.61131 -38.18405 -37.75765 -36.59160 -34.40414 -34.17265 -31.24046 -29.69015 -27.70292 -27.28220 -24.73741 -23.61053 -23.27243 -22.16912 -21.56679 -19.37069 -19.10969 -18.39564 -17.89501 -16.96218 -16.77768 -16.64121 -16.31932 -16.02549 -15.70962 -15.14764 -14.80409 -14.61073 -13.91238 -13.64660 -13.38344 -13.26498 -12.85554 -12.77316 -12.72807 -12.50963 -12.40934 -12.15381 -12.08442 -12.00170 -11.48092 -11.35837 -11.32988 -10.91063 -10.70107 -10.59258 -10.17012 -8.12286 -6.38312 0.06798 1.05391 1.47384 1.48304 1.58680 1.82831 2.25615 2.43944 2.78847 2.93238 3.11240 3.15899 3.81041 3.90275 3.93511 4.04183 4.12088 4.15879 4.28282 4.37592 4.40004 4.48806 4.50765 4.65689 4.68215 4.76030 4.90729 4.99063 5.01863 5.18041 5.22533 5.57673 5.71263 6.00019 6.01203 6.73081 7.08345 7.35333 7.53576 8.92927 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.051524 B = 0.003014 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.308328 B = 9286.790538 C = 9360.838556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.024 3.976 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.259 1.259 7 C -0.579 4.579 8 H 0.078 0.922 9 C 0.235 3.765 10 H 0.025 0.975 11 O -0.578 6.578 12 C -0.047 4.047 13 C 0.212 3.788 14 N -0.490 5.490 15 C 0.160 3.840 16 C 0.163 3.837 17 O -0.403 6.403 18 C 0.090 3.910 19 C -0.177 4.177 20 C -0.179 4.179 21 C -0.156 4.156 22 N -0.395 5.395 23 O 0.064 5.936 24 H 0.261 0.739 25 H 0.361 0.639 26 H 0.123 0.877 27 H 0.120 0.880 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.061 -19.712 -4.436 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.789 3.211 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.183 1.183 7 C -0.617 4.617 8 H 0.096 0.904 9 C 0.177 3.823 10 H 0.043 0.957 11 O -0.382 6.382 12 C -0.086 4.086 13 C -0.007 4.007 14 N -0.224 5.224 15 C -0.113 4.113 16 C 0.085 3.915 17 O -0.322 6.322 18 C 0.015 3.985 19 C -0.195 4.195 20 C -0.216 4.216 21 C -0.193 4.193 22 N -0.107 5.107 23 O 0.007 5.993 24 H 0.070 0.930 25 H 0.206 0.794 26 H 0.141 0.859 27 H 0.138 0.862 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.220 -20.370 -3.785 20.754 hybrid contribution 0.462 1.267 -0.175 1.360 sum 1.682 -19.102 -3.961 19.581 Atomic orbital electron populations 1.70232 1.07905 1.27482 1.48333 1.25932 0.95407 1.03151 0.93337 0.85487 0.78801 0.78505 0.78341 1.19978 1.21572 1.18265 1.21955 0.94158 0.91343 1.54232 0.90416 1.19236 0.87662 0.89940 0.85506 0.95708 1.86541 1.39229 1.96307 1.16170 1.21349 0.97628 0.82772 1.06839 1.29413 0.94784 0.97362 0.79136 1.71890 1.15320 1.04562 1.30675 1.25955 1.00555 0.97576 0.87250 1.20448 0.89044 0.82609 0.99355 1.87885 1.36400 1.28424 1.79508 1.22263 0.95133 0.84509 0.96641 1.22124 0.99994 0.89449 1.07961 1.23190 1.04030 0.98587 0.95814 1.23096 1.03974 0.98198 0.94007 1.74517 1.14952 1.02632 1.18615 1.85243 1.52433 1.25884 1.35743 0.93030 0.79361 0.85911 0.86151 0.88386 0.88525 0.91108 0.91339 0.88422 0.88291 0.87981 0.87217 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.53 12.84 21.45 0.28 -52.25 16 2 C 0.02 1.29 5.40 84.65 0.46 1.75 16 3 Si 0.96 41.25 29.54 68.60 2.03 43.27 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 7 C -0.58 -29.16 8.76 25.60 0.22 -28.94 16 8 H 0.08 3.60 7.74 -2.91 -0.02 3.58 16 9 C 0.24 11.26 2.81 29.85 0.08 11.34 16 10 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 11 O -0.58 -29.08 12.49 -148.98 -1.86 -30.94 16 12 C -0.05 -1.71 5.46 29.85 0.16 -1.55 16 13 C 0.21 8.21 7.54 88.38 0.67 8.87 16 14 N -0.49 -19.17 11.55 -303.22 -3.50 -22.68 16 15 C 0.16 5.77 7.85 138.46 1.09 6.86 16 16 C 0.16 4.36 6.56 71.24 0.47 4.83 16 17 O -0.40 -10.98 10.33 -148.98 -1.54 -12.51 16 18 C 0.09 1.68 6.22 71.98 0.45 2.12 16 19 C -0.18 -3.10 6.05 -10.79 -0.07 -3.17 16 20 C -0.18 -2.51 10.18 30.62 0.31 -2.19 16 21 C -0.16 -1.87 10.25 30.62 0.31 -1.55 16 22 N -0.39 -15.10 12.16 -60.34 -0.73 -15.83 16 23 O 0.06 2.48 11.31 74.90 0.85 3.32 16 24 H 0.26 14.46 8.31 -92.71 -0.77 13.68 16 25 H 0.36 15.93 9.04 -74.06 -0.67 15.26 16 26 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 27 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 28 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.04 7.88 -2.38 -0.02 1.02 16 32 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.10 1.28 8.03 -2.39 -0.02 1.26 16 35 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -66.79 321.03 0.10 -66.70 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.43 Total: 22.56 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 4.16 Total: -1.63 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -3.96 Total: -90.76 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -2.55 Total: -40.14 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.27 kcal Total: -66.79 0.10 -66.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395587478.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.909 kcal (2) G-P(sol) polarization free energy of solvation -66.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds