Wall clock time and date at job start Mon Mar 30 2020 05:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47240 * 2 1 4 4 C 1.53004 * 108.00008 * 183.21240 * 3 2 1 5 5 C 1.53000 * 109.47191 * 176.78222 * 4 3 2 6 6 C 1.51702 * 108.12897 * 299.99767 * 3 2 1 7 7 O 1.21233 * 121.23454 * 301.73510 * 6 3 2 8 8 N 1.34987 * 117.52750 * 121.75450 * 6 3 2 9 9 C 1.46504 * 119.01840 * 179.97438 * 8 6 3 10 10 C 1.33795 * 121.96861 * 0.02562 * 8 6 3 11 11 O 1.21481 * 117.60754 * 179.71162 * 10 8 6 12 12 N 1.33785 * 124.77899 * 359.97438 * 10 8 6 13 13 C 1.37495 * 119.02000 * 180.02562 * 12 10 8 14 14 H 1.08007 * 119.99275 * 41.58969 * 13 12 10 15 15 C 1.38902 * 120.00313 * 221.59271 * 13 12 10 16 16 N 1.31370 * 120.00324 * 19.89961 * 15 13 12 17 17 Si 1.86806 * 119.99732 * 199.90223 * 15 13 12 18 18 H 1.48501 * 109.47027 * 59.99963 * 17 15 13 19 19 H 1.48502 * 109.46976 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47056 * 299.99591 * 17 15 13 21 21 C 1.34998 * 121.96885 * 0.02562 * 12 10 8 22 22 O 1.21224 * 121.23717 * 180.02562 * 21 12 10 23 23 H 1.09000 * 109.47406 * 60.00129 * 1 2 3 24 24 H 1.08999 * 109.47399 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47180 * 300.00089 * 1 2 3 26 26 H 1.09000 * 109.47180 * 239.99911 * 2 1 3 27 27 H 1.09005 * 109.46710 * 119.99833 * 2 1 3 28 28 H 1.08998 * 109.47246 * 296.78383 * 4 3 2 29 29 H 1.08997 * 109.46906 * 56.78656 * 4 3 2 30 30 H 1.09006 * 109.46663 * 60.00506 * 5 4 3 31 31 H 1.08996 * 109.47101 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.47157 * 300.00216 * 5 4 3 33 33 H 1.09002 * 109.47451 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.46970 * 300.02413 * 9 8 6 35 35 H 1.08997 * 109.47057 * 60.01832 * 9 8 6 36 36 H 0.96997 * 120.00487 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5673 1.4039 -0.0815 5 6 4.1098 2.8321 -0.1646 6 6 1.5177 2.1278 -1.2486 7 8 1.7685 1.6970 -2.3537 8 7 0.7638 3.2353 -1.0834 9 6 0.2430 3.9235 -2.2672 10 6 0.4789 3.7239 0.1291 11 8 -0.2022 4.7283 0.1855 12 7 0.8933 3.1900 1.2837 13 6 0.5290 3.7913 2.4653 14 1 -0.4762 4.1651 2.5935 15 6 1.4537 3.9181 3.4941 16 7 2.7392 3.8378 3.2355 17 14 0.8693 4.2028 5.2454 18 1 0.0117 3.0678 5.6716 19 1 2.0435 4.3020 6.1490 20 1 0.0882 5.4641 5.3076 21 6 1.6584 2.0785 1.3233 22 8 2.0261 1.6057 2.3773 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8901 28 1 3.9664 0.9148 0.8070 29 1 3.8698 0.8482 -0.9691 30 1 3.8073 3.3878 0.7230 31 1 5.1979 2.8046 -0.2232 32 1 3.7108 3.3212 -1.0532 33 1 -0.3395 4.7908 -1.9564 34 1 1.0739 4.2492 -2.8931 35 1 -0.3928 3.2426 -2.8330 36 1 3.3849 3.9260 3.9539 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487906281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:02 Heat of formation + Delta-G solvation = -85.608726 kcal Electronic energy + Delta-G solvation = -22815.120888 eV Core-core repulsion = 19493.445930 eV Total energy + Delta-G solvation = -3321.674958 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.73837 -38.78610 -38.43128 -35.06187 -34.56953 -34.13372 -32.00353 -31.92567 -28.02427 -26.56095 -25.29599 -23.90247 -22.25480 -21.72729 -21.04406 -18.88390 -18.13163 -16.54507 -16.42018 -15.75073 -15.16663 -14.65762 -14.52940 -14.31314 -14.07614 -13.92379 -13.45466 -13.21541 -12.84616 -12.61870 -12.48360 -12.22121 -12.04514 -11.66423 -11.51350 -11.31587 -11.04350 -10.98246 -10.84996 -10.55742 -10.47903 -10.36792 -9.93129 -9.64552 -9.26105 -9.21428 -8.85341 -7.99206 -6.50705 -4.31813 2.11847 2.88148 3.12331 3.21804 3.25930 3.30446 3.84208 4.18856 4.26056 4.33230 4.87263 5.05920 5.20838 5.34717 5.48907 5.54821 5.62395 5.67211 5.68852 5.75141 5.96758 6.00067 6.04266 6.08608 6.11101 6.26209 6.29429 6.41768 6.47546 6.82445 7.06402 7.42935 7.82533 7.90371 8.16801 8.58420 8.84575 9.15400 9.54062 10.60578 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021356 B = 0.009546 C = 0.008463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.781773 B = 2932.388558 C = 3307.899835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.100 4.100 3 C -0.117 4.117 4 C -0.095 4.095 5 C -0.166 4.166 6 C 0.547 3.453 7 O -0.503 6.503 8 N -0.571 5.571 9 C 0.077 3.923 10 C 0.669 3.331 11 O -0.547 6.547 12 N -0.395 5.395 13 C -0.359 4.359 14 H 0.103 0.897 15 C 0.076 3.924 16 N -0.833 5.833 17 Si 0.932 3.068 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.272 1.272 21 C 0.522 3.478 22 O -0.456 6.456 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.263 -4.791 -6.376 7.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.138 4.138 3 C -0.124 4.124 4 C -0.133 4.133 5 C -0.223 4.223 6 C 0.336 3.664 7 O -0.376 6.376 8 N -0.317 5.317 9 C -0.065 4.065 10 C 0.375 3.625 11 O -0.422 6.422 12 N -0.126 5.126 13 C -0.484 4.484 14 H 0.120 0.880 15 C -0.136 4.136 16 N -0.465 5.465 17 Si 0.758 3.242 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.197 1.197 21 C 0.309 3.691 22 O -0.325 6.325 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.071 -4.750 -6.251 7.852 hybrid contribution -0.057 0.269 0.614 0.673 sum -0.129 -4.482 -5.637 7.203 Atomic orbital electron populations 1.21891 0.95454 1.02337 1.02135 1.21536 0.96361 0.91795 1.04096 1.21835 1.00043 0.98558 0.91993 1.21484 0.89284 0.98976 1.03516 1.21951 1.00924 0.96360 1.03094 1.20670 0.76056 0.78971 0.90691 1.90648 1.56531 1.64324 1.26146 1.46278 1.49410 1.27564 1.08410 1.21796 1.00198 0.98910 0.85581 1.16238 0.82832 0.83228 0.80218 1.90776 1.41115 1.24688 1.85663 1.41764 1.44039 1.21996 1.04834 1.19308 0.98308 1.43321 0.87503 0.87977 1.25298 0.94258 0.93343 1.00737 1.69805 1.00943 1.41601 1.34166 0.85938 0.78325 0.78996 0.80984 1.19434 1.20796 1.19692 1.19894 0.80267 0.80156 0.88758 1.90572 1.49972 1.61022 1.30983 0.93179 0.91688 0.91928 0.90128 0.89342 0.89465 0.90691 0.89629 0.92252 0.93869 0.88041 0.91272 0.91367 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.48 37.15 0.35 -2.18 16 2 C -0.10 -1.62 4.63 -26.74 -0.12 -1.75 16 3 C -0.12 -2.25 0.43 -155.82 -0.07 -2.32 16 4 C -0.09 -1.67 4.63 -26.73 -0.12 -1.79 16 5 C -0.17 -3.09 9.48 37.16 0.35 -2.73 16 6 C 0.55 10.52 3.67 -10.40 -0.04 10.48 16 7 O -0.50 -9.68 16.74 5.60 0.09 -9.58 16 8 N -0.57 -11.40 2.94 -128.28 -0.38 -11.77 16 9 C 0.08 1.24 9.95 59.85 0.60 1.83 16 10 C 0.67 15.84 8.01 -88.68 -0.71 15.13 16 11 O -0.55 -13.97 14.87 5.38 0.08 -13.89 16 12 N -0.39 -9.97 2.62 -65.67 -0.17 -10.14 16 13 C -0.36 -9.76 8.45 -14.76 -0.12 -9.89 16 14 H 0.10 2.78 7.73 -52.48 -0.41 2.38 16 15 C 0.08 2.01 4.31 -17.50 -0.08 1.93 16 16 N -0.83 -22.56 11.59 55.49 0.64 -21.91 16 17 Si 0.93 20.80 29.60 -169.99 -5.03 15.77 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 C 0.52 12.23 3.58 -10.39 -0.04 12.19 16 22 O -0.46 -11.74 14.06 5.61 0.08 -11.66 16 23 H 0.05 0.80 7.14 -51.93 -0.37 0.43 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.06 1.12 7.37 -51.93 -0.38 0.73 16 26 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 27 H 0.09 1.41 7.87 -51.93 -0.41 1.00 16 28 H 0.09 1.54 7.87 -51.93 -0.41 1.13 16 29 H 0.07 1.16 8.05 -51.93 -0.42 0.74 16 30 H 0.08 1.92 7.35 -51.93 -0.38 1.54 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.04 0.79 7.14 -51.93 -0.37 0.42 16 33 H 0.10 1.64 6.67 -51.93 -0.35 1.30 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 296.46 15.07 4.47 4.47 Total: -1.00 -30.56 296.46 -4.96 -35.51 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -4.74 Total: 2.29 kcal Atomic # 6 Polarization: 20.91 SS G_CDS: 0.00 Total: 20.91 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.09 Total: -43.83 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: 0.25 Total: -35.13 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.56 -4.96 -35.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487906281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.094 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds