Wall clock time and date at job start Mon Mar 30 2020 05:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47240 * 2 1 4 4 C 1.53004 * 108.00008 * 183.21240 * 3 2 1 5 5 C 1.53000 * 109.47191 * 176.78222 * 4 3 2 6 6 C 1.51702 * 108.12897 * 299.99767 * 3 2 1 7 7 O 1.21233 * 121.23454 * 301.73510 * 6 3 2 8 8 N 1.34987 * 117.52750 * 121.75450 * 6 3 2 9 9 C 1.46504 * 119.01840 * 179.97438 * 8 6 3 10 10 C 1.33795 * 121.96861 * 0.02562 * 8 6 3 11 11 O 1.21481 * 117.60754 * 179.71162 * 10 8 6 12 12 N 1.33785 * 124.77899 * 359.97438 * 10 8 6 13 13 C 1.37495 * 119.02000 * 180.02562 * 12 10 8 14 14 H 1.08007 * 119.99275 * 41.58969 * 13 12 10 15 15 C 1.38902 * 120.00313 * 221.59271 * 13 12 10 16 16 N 1.31370 * 120.00324 * 19.89961 * 15 13 12 17 17 Si 1.86806 * 119.99732 * 199.90223 * 15 13 12 18 18 H 1.48501 * 109.47027 * 59.99963 * 17 15 13 19 19 H 1.48502 * 109.46976 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47056 * 299.99591 * 17 15 13 21 21 C 1.34998 * 121.96885 * 0.02562 * 12 10 8 22 22 O 1.21224 * 121.23717 * 180.02562 * 21 12 10 23 23 H 1.09000 * 109.47406 * 60.00129 * 1 2 3 24 24 H 1.08999 * 109.47399 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47180 * 300.00089 * 1 2 3 26 26 H 1.09000 * 109.47180 * 239.99911 * 2 1 3 27 27 H 1.09005 * 109.46710 * 119.99833 * 2 1 3 28 28 H 1.08998 * 109.47246 * 296.78383 * 4 3 2 29 29 H 1.08997 * 109.46906 * 56.78656 * 4 3 2 30 30 H 1.09006 * 109.46663 * 60.00506 * 5 4 3 31 31 H 1.08996 * 109.47101 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.47157 * 300.00216 * 5 4 3 33 33 H 1.09002 * 109.47451 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.46970 * 300.02413 * 9 8 6 35 35 H 1.08997 * 109.47057 * 60.01832 * 9 8 6 36 36 H 0.96997 * 120.00487 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5673 1.4039 -0.0815 5 6 4.1098 2.8321 -0.1646 6 6 1.5177 2.1278 -1.2486 7 8 1.7685 1.6970 -2.3537 8 7 0.7638 3.2353 -1.0834 9 6 0.2430 3.9235 -2.2672 10 6 0.4789 3.7239 0.1291 11 8 -0.2022 4.7283 0.1855 12 7 0.8933 3.1900 1.2837 13 6 0.5290 3.7913 2.4653 14 1 -0.4762 4.1651 2.5935 15 6 1.4537 3.9181 3.4941 16 7 2.7392 3.8378 3.2355 17 14 0.8693 4.2028 5.2454 18 1 0.0117 3.0678 5.6716 19 1 2.0435 4.3020 6.1490 20 1 0.0882 5.4641 5.3076 21 6 1.6584 2.0785 1.3233 22 8 2.0261 1.6057 2.3773 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8901 28 1 3.9664 0.9148 0.8070 29 1 3.8698 0.8482 -0.9691 30 1 3.8073 3.3878 0.7230 31 1 5.1979 2.8046 -0.2232 32 1 3.7108 3.3212 -1.0532 33 1 -0.3395 4.7908 -1.9564 34 1 1.0739 4.2492 -2.8931 35 1 -0.3928 3.2426 -2.8330 36 1 3.3849 3.9260 3.9539 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487906281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:01 Heat of formation + Delta-G solvation = -105.122817 kcal Electronic energy + Delta-G solvation = -22815.967082 eV Core-core repulsion = 19493.445930 eV Total energy + Delta-G solvation = -3322.521153 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.43035 -40.48199 -40.19863 -36.65870 -36.23212 -36.02440 -33.92535 -33.32573 -29.53350 -28.02283 -27.18203 -25.54315 -24.02238 -23.07952 -22.63125 -20.57865 -19.99019 -18.22602 -18.12812 -17.41032 -16.97945 -16.34533 -16.10752 -15.92514 -15.89378 -15.66851 -14.95289 -14.69089 -14.42533 -14.03409 -13.90893 -13.79460 -13.63538 -13.30194 -12.97593 -12.93767 -12.79568 -12.73637 -12.27197 -12.21565 -11.96001 -11.78650 -11.66858 -11.30904 -11.20240 -10.82152 -10.69211 -9.96023 -8.50037 -6.38693 0.45351 1.25290 1.38649 1.43494 1.47060 1.54902 2.11479 2.41663 2.48783 2.65175 3.09093 3.50540 3.70254 3.77546 4.15620 4.20129 4.24312 4.32212 4.33504 4.44466 4.51477 4.66742 4.67632 4.76518 4.87966 4.89478 4.98562 5.05063 5.14842 5.25267 5.33052 5.44309 5.86794 6.25674 6.32585 6.65043 6.94328 7.24739 7.62462 8.60558 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021356 B = 0.009546 C = 0.008463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.781773 B = 2932.388558 C = 3307.899835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.098 4.098 3 C -0.119 4.119 4 C -0.091 4.091 5 C -0.161 4.161 6 C 0.553 3.447 7 O -0.494 6.494 8 N -0.571 5.571 9 C 0.070 3.930 10 C 0.671 3.329 11 O -0.575 6.575 12 N -0.412 5.412 13 C -0.389 4.389 14 H 0.089 0.911 15 C 0.036 3.964 16 N -0.856 5.856 17 Si 0.990 3.010 18 H -0.268 1.268 19 H -0.274 1.274 20 H -0.264 1.264 21 C 0.524 3.476 22 O -0.488 6.488 23 H 0.047 0.953 24 H 0.096 0.904 25 H 0.031 0.969 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.164 -6.118 -7.605 9.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.135 4.135 3 C -0.126 4.126 4 C -0.129 4.129 5 C -0.218 4.218 6 C 0.342 3.658 7 O -0.367 6.367 8 N -0.316 5.316 9 C -0.070 4.070 10 C 0.377 3.623 11 O -0.453 6.453 12 N -0.144 5.144 13 C -0.514 4.514 14 H 0.106 0.894 15 C -0.173 4.173 16 N -0.488 5.488 17 Si 0.812 3.188 18 H -0.193 1.193 19 H -0.198 1.198 20 H -0.188 1.188 21 C 0.313 3.687 22 O -0.359 6.359 23 H 0.066 0.934 24 H 0.115 0.885 25 H 0.051 0.949 26 H 0.128 0.872 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.126 0.874 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.360 -6.088 -7.528 9.688 hybrid contribution -0.197 0.681 0.900 1.145 sum 0.163 -5.407 -6.628 8.555 Atomic orbital electron populations 1.21884 0.95263 1.03958 1.00456 1.21640 0.96519 0.89725 1.05653 1.21918 1.01352 0.99825 0.89519 1.21550 0.87819 0.98581 1.04967 1.21879 1.02703 0.96476 1.00761 1.20592 0.75800 0.78656 0.90729 1.90658 1.56280 1.64030 1.25708 1.46272 1.49452 1.27951 1.07962 1.22093 1.01276 0.99173 0.84447 1.16260 0.82154 0.82954 0.80961 1.90742 1.42343 1.25935 1.86284 1.41960 1.44645 1.22825 1.04958 1.19392 0.98199 1.44641 0.89214 0.89368 1.26124 0.94303 0.92808 1.04061 1.69886 1.01645 1.42257 1.35008 0.85072 0.78155 0.79086 0.76476 1.19274 1.19834 1.18828 1.20510 0.78757 0.79277 0.90160 1.90531 1.50951 1.61766 1.32664 0.93439 0.88470 0.94938 0.87160 0.89075 0.89633 0.87393 0.93968 0.89664 0.94040 0.88645 0.89382 0.88833 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.69 9.48 71.98 0.68 -4.01 16 2 C -0.10 -2.92 4.63 30.59 0.14 -2.78 16 3 C -0.12 -4.40 0.43 -53.03 -0.02 -4.42 16 4 C -0.09 -3.02 4.63 30.60 0.14 -2.88 16 5 C -0.16 -5.79 9.48 71.98 0.68 -5.10 16 6 C 0.55 20.09 3.67 87.94 0.32 20.41 16 7 O -0.49 -17.21 16.74 -2.89 -0.05 -17.26 16 8 N -0.57 -22.24 2.94 -796.92 -2.34 -24.58 16 9 C 0.07 2.14 9.95 127.77 1.27 3.41 16 10 C 0.67 32.25 8.01 179.67 1.44 33.69 16 11 O -0.58 -30.14 14.87 -3.66 -0.05 -30.19 16 12 N -0.41 -21.32 2.62 -598.84 -1.57 -22.89 16 13 C -0.39 -21.87 8.45 83.96 0.71 -21.16 16 14 H 0.09 5.04 7.73 -2.91 -0.02 5.01 16 15 C 0.04 1.97 4.31 84.92 0.37 2.34 16 16 N -0.86 -47.41 11.59 21.65 0.25 -47.16 16 17 Si 0.99 43.21 29.60 68.60 2.03 45.24 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 C 0.52 24.76 3.58 87.94 0.31 25.08 16 22 O -0.49 -25.56 14.06 -2.86 -0.04 -25.60 16 23 H 0.05 1.41 7.14 -2.39 -0.02 1.39 16 24 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.03 1.14 7.37 -2.39 -0.02 1.12 16 26 H 0.11 2.69 8.04 -2.39 -0.02 2.67 16 27 H 0.09 2.70 7.87 -2.38 -0.02 2.68 16 28 H 0.09 2.88 7.87 -2.39 -0.02 2.86 16 29 H 0.11 2.89 8.05 -2.39 -0.02 2.87 16 30 H 0.04 1.90 7.35 -2.38 -0.02 1.88 16 31 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.04 1.46 7.14 -2.39 -0.02 1.45 16 33 H 0.09 3.03 6.67 -2.39 -0.02 3.01 16 34 H 0.09 2.33 8.14 -2.38 -0.02 2.32 16 35 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -67.10 296.46 5.36 -61.74 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 1.09 Total: 16.12 kcal Atomic # 6 Polarization: 38.53 SS G_CDS: 6.05 Total: 44.58 kcal Atomic # 7 Polarization: -90.97 SS G_CDS: -3.66 Total: -94.63 kcal Atomic # 8 Polarization: -72.91 SS G_CDS: -0.14 Total: -73.05 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -67.10 5.36 -61.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487906281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.382 kcal (2) G-P(sol) polarization free energy of solvation -67.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds