Wall clock time and date at job start Mon Mar 30 2020 06:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35753 * 116.99979 * 2 1 4 4 C 1.35866 * 126.13281 * 180.11503 * 3 2 1 5 5 C 1.40338 * 107.78511 * 180.12181 * 4 3 2 6 6 N 1.40175 * 125.93208 * 179.82613 * 5 4 3 7 7 C 1.34775 * 120.00075 * 359.97438 * 6 5 4 8 8 O 1.21592 * 119.99833 * 359.72541 * 7 6 5 9 9 N 1.34770 * 120.00130 * 179.72095 * 7 6 5 10 10 C 1.46500 * 120.00210 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.46935 * 35.00125 * 10 9 7 12 12 C 1.52994 * 109.47452 * 275.00398 * 10 9 7 13 13 C 1.50702 * 109.47483 * 154.99776 * 10 9 7 14 14 H 1.08002 * 119.99343 * 35.19187 * 13 10 9 15 15 C 1.37872 * 120.00554 * 215.19457 * 13 10 9 16 16 N 1.31511 * 120.00416 * 179.03548 * 15 13 10 17 17 Si 1.86802 * 119.99875 * 359.02909 * 15 13 10 18 18 H 1.48504 * 109.47015 * 85.12026 * 17 15 13 19 19 H 1.48498 * 109.47213 * 205.12304 * 17 15 13 20 20 H 1.48508 * 109.47243 * 325.12478 * 17 15 13 21 21 N 1.31212 * 108.13764 * 359.56881 * 5 4 3 22 22 N 1.35160 * 126.13645 * 359.76094 * 3 2 1 23 23 C 1.46494 * 125.97866 * 0.04773 * 22 3 2 24 24 H 1.09004 * 109.47274 * 51.51957 * 1 2 3 25 25 H 1.09002 * 109.47320 * 171.51884 * 1 2 3 26 26 H 1.09003 * 109.47081 * 291.52300 * 1 2 3 27 27 H 1.08000 * 126.11391 * 359.97438 * 4 3 2 28 28 H 0.97000 * 119.99725 * 179.71599 * 6 5 4 29 29 H 0.97001 * 120.00483 * 0.02562 * 9 7 6 30 30 H 1.09003 * 109.46851 * 296.77365 * 12 10 9 31 31 H 1.08999 * 109.47464 * 56.77227 * 12 10 9 32 32 H 1.08998 * 109.47358 * 176.77491 * 12 10 9 33 33 H 0.96997 * 120.00176 * 179.97438 * 16 15 13 34 34 H 1.08998 * 109.47561 * 277.09675 * 23 22 3 35 35 H 1.08997 * 109.47036 * 37.09528 * 23 22 3 36 36 H 1.08999 * 109.47064 * 157.09947 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 3.3867 1.4252 -0.0022 5 6 3.5978 2.8126 0.0015 6 7 4.8437 3.4551 0.0043 7 6 5.9776 2.7266 0.0039 8 8 5.9198 1.5120 0.0063 9 7 7.1754 3.3443 0.0008 10 6 8.4079 2.5524 0.0010 11 1 8.2578 1.6464 -0.5861 12 6 8.7710 2.1742 1.4383 13 6 9.5258 3.3628 -0.6029 14 1 9.5685 4.4296 -0.4397 15 6 10.4940 2.7425 -1.3636 16 7 11.4589 3.4524 -1.9064 17 14 10.4353 0.8935 -1.6234 18 1 9.5420 0.5826 -2.7683 19 1 11.8025 0.3905 -1.9113 20 1 9.9146 0.2376 -0.3970 21 7 2.4266 3.4040 -0.0036 22 7 1.4345 2.4153 -0.0046 23 6 -0.0119 2.6474 -0.0094 24 1 -0.3634 0.6395 -0.8045 25 1 -0.3634 -1.0164 -0.1516 26 1 -0.3633 0.3770 0.9560 27 1 4.1537 0.6648 -0.0039 28 1 4.8897 4.4240 0.0026 29 1 7.2215 4.3132 -0.0007 30 1 8.9771 3.0786 2.0109 31 1 7.9390 1.6374 1.8941 32 1 9.6556 1.5374 1.4341 33 1 12.1402 3.0159 -2.4413 34 1 -0.3878 2.5773 -1.0301 35 1 -0.5023 1.8970 0.6107 36 1 -0.2219 3.6405 0.3876 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548172685.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:51 Heat of formation + Delta-G solvation = 40.726215 kcal Electronic energy + Delta-G solvation = -20314.685668 eV Core-core repulsion = 17030.781755 eV Total energy + Delta-G solvation = -3283.903913 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 5.43 seconds Orbital eigenvalues (eV) -41.56148 -39.58332 -38.23195 -35.33029 -34.31711 -32.82331 -32.16241 -29.98910 -29.34231 -27.51769 -25.94515 -25.26600 -22.46154 -21.51422 -20.28933 -19.83413 -18.39343 -17.92279 -16.78819 -16.43515 -16.11756 -15.36473 -15.12727 -14.91157 -14.62383 -14.37037 -14.08869 -13.81383 -13.34235 -13.29328 -12.80928 -12.50263 -12.37900 -11.84894 -11.58596 -11.43111 -11.13882 -10.77185 -10.53532 -10.46837 -10.23588 -9.87092 -9.43282 -9.15804 -8.73958 -8.34954 -8.22808 -7.88880 -6.22148 -4.26350 1.88792 2.11467 2.75995 2.89964 3.20121 3.32537 3.37648 3.45058 3.91250 4.28165 4.34850 4.53084 4.69920 4.77652 4.82979 4.93911 5.17800 5.22352 5.39990 5.46975 5.79901 6.14058 6.34629 6.48768 6.57008 6.70473 6.85605 7.05229 7.14162 7.28088 7.40599 7.44848 7.56846 7.86738 8.27736 8.67700 8.79851 9.13139 9.39873 10.89341 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.035476 B = 0.004077 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.084393 B = 6865.483780 C = 7252.336380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.289 6.289 3 C 0.274 3.726 4 C -0.278 4.278 5 C 0.356 3.644 6 N -0.653 5.653 7 C 0.701 3.299 8 O -0.577 6.577 9 N -0.710 5.710 10 C 0.249 3.751 11 H 0.051 0.949 12 C -0.150 4.150 13 C -0.530 4.530 14 H 0.079 0.921 15 C 0.082 3.918 16 N -0.889 5.889 17 Si 0.875 3.125 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.258 1.258 21 N -0.331 5.331 22 N -0.406 5.406 23 C 0.088 3.912 24 H 0.062 0.938 25 H 0.105 0.895 26 H 0.061 0.939 27 H 0.183 0.817 28 H 0.410 0.590 29 H 0.392 0.608 30 H 0.046 0.954 31 H 0.031 0.969 32 H 0.054 0.946 33 H 0.268 0.732 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.506 -2.346 4.243 23.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.196 6.196 3 C 0.107 3.893 4 C -0.308 4.308 5 C 0.099 3.901 6 N -0.305 5.305 7 C 0.400 3.600 8 O -0.453 6.453 9 N -0.363 5.363 10 C 0.146 3.854 11 H 0.069 0.931 12 C -0.210 4.210 13 C -0.568 4.568 14 H 0.098 0.902 15 C -0.123 4.123 16 N -0.525 5.525 17 Si 0.701 3.299 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.183 1.183 21 N -0.166 5.166 22 N -0.202 5.202 23 C -0.053 4.053 24 H 0.081 0.919 25 H 0.123 0.877 26 H 0.079 0.921 27 H 0.200 0.800 28 H 0.245 0.755 29 H 0.226 0.774 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -22.898 -2.699 4.122 23.423 hybrid contribution 0.135 -0.509 -0.267 0.590 sum -22.763 -3.207 3.855 23.309 Atomic orbital electron populations 1.23596 0.78599 1.04920 1.01232 1.86301 1.21075 1.22198 1.89981 1.19614 0.91066 0.78733 0.99909 1.20893 0.91997 0.96241 1.21713 1.18447 0.85344 0.90455 0.95860 1.41955 1.01389 1.09915 1.77193 1.16055 0.80113 0.85511 0.78284 1.90802 1.85531 1.11607 1.57391 1.45967 1.03920 1.10260 1.76113 1.19026 0.80405 0.92250 0.93680 0.93114 1.22266 0.99717 1.00162 0.98807 1.21009 1.07209 0.96432 1.32174 0.90249 1.24932 0.95033 0.98452 0.93900 1.69875 1.13842 1.36184 1.32582 0.86891 0.77351 0.85609 0.80009 1.19777 1.21232 1.18271 1.77434 0.93933 1.09844 1.35398 1.48311 1.05924 1.02455 1.63534 1.22312 0.75288 1.04904 1.02819 0.91943 0.87660 0.92109 0.80028 0.75475 0.77431 0.93446 0.95005 0.92710 0.92203 0.91091 0.89207 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.42 101.05 0.95 1.03 16 2 O -0.29 -3.65 10.57 -18.97 -0.20 -3.85 16 3 C 0.27 4.10 7.78 -16.94 -0.13 3.97 16 4 C -0.28 -5.01 9.63 -39.64 -0.38 -5.39 16 5 C 0.36 6.21 8.10 -154.40 -1.25 4.96 16 6 N -0.65 -10.86 5.45 -15.53 -0.08 -10.94 16 7 C 0.70 14.07 8.50 -86.93 -0.74 13.33 16 8 O -0.58 -13.38 13.13 5.28 0.07 -13.31 16 9 N -0.71 -14.30 5.07 -59.81 -0.30 -14.60 16 10 C 0.25 5.89 2.16 -69.08 -0.15 5.74 16 11 H 0.05 1.31 4.98 -51.93 -0.26 1.05 16 12 C -0.15 -3.28 9.43 37.15 0.35 -2.93 16 13 C -0.53 -14.12 9.05 -34.44 -0.31 -14.43 16 14 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 15 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 16 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 17 Si 0.87 21.50 26.56 -169.99 -4.51 16.99 16 18 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 21 N -0.33 -5.25 12.58 31.43 0.40 -4.86 16 22 N -0.41 -5.39 4.02 -68.30 -0.27 -5.66 16 23 C 0.09 0.65 9.58 59.84 0.57 1.23 16 24 H 0.06 0.34 5.90 -51.93 -0.31 0.03 16 25 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.31 6.44 -51.93 -0.33 -0.02 16 27 H 0.18 3.67 5.91 -52.49 -0.31 3.36 16 28 H 0.41 5.47 8.84 -40.82 -0.36 5.11 16 29 H 0.39 6.83 8.61 -40.82 -0.35 6.48 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 1.20 7.36 -51.93 -0.38 0.82 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 34 H 0.07 0.42 7.55 -51.93 -0.39 0.02 16 35 H 0.09 0.44 4.69 -51.93 -0.24 0.20 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 300.42 15.07 4.53 4.53 Total: -1.00 -34.08 300.42 -5.02 -39.09 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.22 Total: 8.25 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -1.19 Total: 9.65 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.51 Total: -61.35 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.13 Total: -17.16 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.51 Total: 16.99 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.08 -5.02 -39.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548172685.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.820 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.43 seconds