Wall clock time and date at job start Mon Mar 30 2020 06:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35753 * 116.99979 * 2 1 4 4 C 1.35866 * 126.13281 * 180.11503 * 3 2 1 5 5 C 1.40338 * 107.78511 * 180.12181 * 4 3 2 6 6 N 1.40175 * 125.93208 * 179.82613 * 5 4 3 7 7 C 1.34775 * 120.00075 * 359.97438 * 6 5 4 8 8 O 1.21592 * 119.99833 * 359.72541 * 7 6 5 9 9 N 1.34770 * 120.00130 * 179.72095 * 7 6 5 10 10 C 1.46500 * 120.00210 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.46935 * 35.00125 * 10 9 7 12 12 C 1.52994 * 109.47452 * 275.00398 * 10 9 7 13 13 C 1.50702 * 109.47483 * 154.99776 * 10 9 7 14 14 H 1.08002 * 119.99343 * 35.19187 * 13 10 9 15 15 C 1.37872 * 120.00554 * 215.19457 * 13 10 9 16 16 N 1.31511 * 120.00416 * 179.03548 * 15 13 10 17 17 Si 1.86802 * 119.99875 * 359.02909 * 15 13 10 18 18 H 1.48504 * 109.47015 * 85.12026 * 17 15 13 19 19 H 1.48498 * 109.47213 * 205.12304 * 17 15 13 20 20 H 1.48508 * 109.47243 * 325.12478 * 17 15 13 21 21 N 1.31212 * 108.13764 * 359.56881 * 5 4 3 22 22 N 1.35160 * 126.13645 * 359.76094 * 3 2 1 23 23 C 1.46494 * 125.97866 * 0.04773 * 22 3 2 24 24 H 1.09004 * 109.47274 * 51.51957 * 1 2 3 25 25 H 1.09002 * 109.47320 * 171.51884 * 1 2 3 26 26 H 1.09003 * 109.47081 * 291.52300 * 1 2 3 27 27 H 1.08000 * 126.11391 * 359.97438 * 4 3 2 28 28 H 0.97000 * 119.99725 * 179.71599 * 6 5 4 29 29 H 0.97001 * 120.00483 * 0.02562 * 9 7 6 30 30 H 1.09003 * 109.46851 * 296.77365 * 12 10 9 31 31 H 1.08999 * 109.47464 * 56.77227 * 12 10 9 32 32 H 1.08998 * 109.47358 * 176.77491 * 12 10 9 33 33 H 0.96997 * 120.00176 * 179.97438 * 16 15 13 34 34 H 1.08998 * 109.47561 * 277.09675 * 23 22 3 35 35 H 1.08997 * 109.47036 * 37.09528 * 23 22 3 36 36 H 1.08999 * 109.47064 * 157.09947 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 3.3867 1.4252 -0.0022 5 6 3.5978 2.8126 0.0015 6 7 4.8437 3.4551 0.0043 7 6 5.9776 2.7266 0.0039 8 8 5.9198 1.5120 0.0063 9 7 7.1754 3.3443 0.0008 10 6 8.4079 2.5524 0.0010 11 1 8.2578 1.6464 -0.5861 12 6 8.7710 2.1742 1.4383 13 6 9.5258 3.3628 -0.6029 14 1 9.5685 4.4296 -0.4397 15 6 10.4940 2.7425 -1.3636 16 7 11.4589 3.4524 -1.9064 17 14 10.4353 0.8935 -1.6234 18 1 9.5420 0.5826 -2.7683 19 1 11.8025 0.3905 -1.9113 20 1 9.9146 0.2376 -0.3970 21 7 2.4266 3.4040 -0.0036 22 7 1.4345 2.4153 -0.0046 23 6 -0.0119 2.6474 -0.0094 24 1 -0.3634 0.6395 -0.8045 25 1 -0.3634 -1.0164 -0.1516 26 1 -0.3633 0.3770 0.9560 27 1 4.1537 0.6648 -0.0039 28 1 4.8897 4.4240 0.0026 29 1 7.2215 4.3132 -0.0007 30 1 8.9771 3.0786 2.0109 31 1 7.9390 1.6374 1.8941 32 1 9.6556 1.5374 1.4341 33 1 12.1402 3.0159 -2.4413 34 1 -0.3878 2.5773 -1.0301 35 1 -0.5023 1.8970 0.6107 36 1 -0.2219 3.6405 0.3876 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548172685.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:48 Heat of formation + Delta-G solvation = 13.409662 kcal Electronic energy + Delta-G solvation = -20315.870203 eV Core-core repulsion = 17030.781755 eV Total energy + Delta-G solvation = -3285.088447 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.70085 -41.07987 -39.27726 -37.00368 -35.81163 -34.45428 -33.60549 -31.44869 -30.69659 -28.38353 -27.28806 -26.74841 -23.97838 -22.65407 -21.79427 -21.46760 -19.95741 -19.12984 -18.27337 -17.67553 -17.47008 -16.69392 -16.40339 -16.26234 -15.99213 -15.60652 -15.33908 -15.06888 -14.55467 -14.48553 -14.30353 -14.09520 -13.88622 -13.35924 -13.06629 -12.74733 -12.63366 -12.33108 -12.28757 -11.84169 -11.62741 -11.34938 -11.17498 -11.08858 -10.85356 -9.94851 -9.40874 -9.22897 -8.36369 -6.43101 0.72564 1.00193 1.34250 1.38612 1.49357 1.54961 1.66398 2.17613 2.30884 2.38373 2.98320 3.35587 3.62358 4.05486 4.13248 4.34583 4.37417 4.42735 4.46776 4.55728 4.58377 4.74328 4.78157 4.86428 5.07852 5.13060 5.20012 5.39812 5.50635 5.70102 5.73977 5.88247 6.22076 6.42007 6.59693 6.65361 7.15820 7.24749 7.57530 8.78313 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.035476 B = 0.004077 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.084393 B = 6865.483780 C = 7252.336380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 O -0.305 6.305 3 C 0.292 3.708 4 C -0.324 4.324 5 C 0.337 3.663 6 N -0.638 5.638 7 C 0.704 3.296 8 O -0.608 6.608 9 N -0.707 5.707 10 C 0.254 3.746 11 H 0.031 0.969 12 C -0.144 4.144 13 C -0.525 4.525 14 H 0.060 0.940 15 C 0.034 3.966 16 N -0.930 5.930 17 Si 0.925 3.075 18 H -0.277 1.277 19 H -0.277 1.277 20 H -0.250 1.250 21 N -0.334 5.334 22 N -0.393 5.393 23 C 0.071 3.929 24 H 0.080 0.920 25 H 0.129 0.871 26 H 0.082 0.918 27 H 0.152 0.848 28 H 0.425 0.575 29 H 0.406 0.594 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.271 0.729 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.459 -2.755 4.776 26.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.211 6.211 3 C 0.123 3.877 4 C -0.356 4.356 5 C 0.081 3.919 6 N -0.291 5.291 7 C 0.403 3.597 8 O -0.487 6.487 9 N -0.361 5.361 10 C 0.150 3.850 11 H 0.049 0.951 12 C -0.203 4.203 13 C -0.564 4.564 14 H 0.078 0.922 15 C -0.166 4.166 16 N -0.568 5.568 17 Si 0.750 3.250 18 H -0.203 1.203 19 H -0.203 1.203 20 H -0.174 1.174 21 N -0.169 5.169 22 N -0.190 5.190 23 C -0.067 4.067 24 H 0.099 0.901 25 H 0.147 0.853 26 H 0.100 0.900 27 H 0.170 0.830 28 H 0.263 0.737 29 H 0.241 0.759 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.138 0.862 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -25.921 -3.062 4.667 26.516 hybrid contribution 0.778 -0.375 -0.414 0.958 sum -25.143 -3.437 4.254 25.731 Atomic orbital electron populations 1.24087 0.75339 1.07263 1.03130 1.86320 1.24466 1.20885 1.89477 1.19390 0.90571 0.80024 0.97764 1.20693 0.93283 0.96139 1.25439 1.18508 0.85668 0.90444 0.97275 1.41553 1.00597 1.10445 1.76489 1.15993 0.80614 0.85127 0.77930 1.90802 1.86121 1.13182 1.58605 1.45539 1.03267 1.10742 1.76511 1.18781 0.80665 0.91254 0.94319 0.95064 1.22156 0.99757 1.00770 0.97568 1.21179 1.07841 0.95807 1.31545 0.92226 1.25587 0.94931 1.02040 0.94087 1.69968 1.14933 1.37801 1.34115 0.86084 0.77517 0.81467 0.79922 1.20320 1.20296 1.17385 1.77356 0.93757 1.10760 1.35024 1.48722 1.07447 1.01349 1.61503 1.22892 0.71916 1.06750 1.05161 0.90150 0.85284 0.90013 0.83019 0.73657 0.75853 0.92179 0.94402 0.92982 0.92001 0.88813 0.86152 0.87793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.05 9.42 113.37 1.07 1.02 16 2 O -0.31 -7.11 10.57 -90.78 -0.96 -8.07 16 3 C 0.29 8.38 7.78 83.63 0.65 9.03 16 4 C -0.32 -11.88 9.63 22.23 0.21 -11.66 16 5 C 0.34 11.67 8.10 133.30 1.08 12.75 16 6 N -0.64 -21.10 5.45 -321.30 -1.75 -22.86 16 7 C 0.70 28.40 8.50 179.06 1.52 29.92 16 8 O -0.61 -28.82 13.13 -4.01 -0.05 -28.87 16 9 N -0.71 -28.36 5.07 -461.42 -2.34 -30.70 16 10 C 0.25 11.98 2.16 44.24 0.10 12.08 16 11 H 0.03 1.62 4.98 -2.38 -0.01 1.61 16 12 C -0.14 -6.15 9.43 71.98 0.68 -5.47 16 13 C -0.53 -28.21 9.05 25.60 0.23 -27.98 16 14 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 15 C 0.03 1.92 5.47 84.65 0.46 2.38 16 16 N -0.93 -55.31 13.96 21.44 0.30 -55.01 16 17 Si 0.93 44.57 26.56 68.60 1.82 46.39 16 18 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.25 -11.60 6.54 99.48 0.65 -10.95 16 21 N -0.33 -10.08 12.58 -54.49 -0.69 -10.77 16 22 N -0.39 -9.48 4.02 -481.32 -1.93 -11.41 16 23 C 0.07 0.77 9.58 127.77 1.22 2.00 16 24 H 0.08 0.51 5.90 -2.38 -0.01 0.50 16 25 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.08 0.47 6.44 -2.39 -0.02 0.45 16 27 H 0.15 6.46 5.91 -2.91 -0.02 6.44 16 28 H 0.43 11.02 8.84 -92.71 -0.82 10.20 16 29 H 0.41 13.97 8.61 -92.71 -0.80 13.17 16 30 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 2.23 7.36 -2.39 -0.02 2.21 16 33 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.09 0.67 7.55 -2.39 -0.02 0.65 16 35 H 0.12 0.59 4.69 -2.39 -0.01 0.58 16 36 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -75.19 300.42 1.09 -74.09 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -0.53 Total: 23.14 kcal Atomic # 6 Polarization: 16.84 SS G_CDS: 7.23 Total: 24.07 kcal Atomic # 7 Polarization: -124.33 SS G_CDS: -6.41 Total: -130.75 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -1.01 Total: -36.94 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.82 Total: 46.39 kcal Total: -75.19 1.09 -74.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548172685.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.502 kcal (2) G-P(sol) polarization free energy of solvation -75.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds