Wall clock time and date at job start Mon Mar 30 2020 06:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35749 * 117.00012 * 2 1 4 4 C 1.35864 * 126.13795 * 179.73874 * 3 2 1 5 5 C 1.40344 * 107.78913 * 180.13587 * 4 3 2 6 6 N 1.40167 * 125.93137 * 179.83159 * 5 4 3 7 7 C 1.34774 * 120.00221 * 359.71681 * 6 5 4 8 8 O 1.21593 * 119.99916 * 0.02562 * 7 6 5 9 9 N 1.34782 * 120.00342 * 179.72275 * 7 6 5 10 10 C 1.46496 * 120.00278 * 180.27628 * 9 7 6 11 11 C 1.52994 * 109.47156 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47125 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00378 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00093 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00153 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00145 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47050 * 60.00072 * 16 14 12 18 18 H 1.48495 * 109.46956 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46908 * 300.00336 * 16 14 12 20 20 N 1.31214 * 108.13265 * 359.56963 * 5 4 3 21 21 N 1.35167 * 126.13566 * 359.40077 * 3 2 1 22 22 C 1.46504 * 125.97809 * 0.05203 * 21 3 2 23 23 H 1.09004 * 109.47150 * 171.82607 * 1 2 3 24 24 H 1.09005 * 109.47334 * 291.82551 * 1 2 3 25 25 H 1.09003 * 109.47186 * 51.82772 * 1 2 3 26 26 H 1.08004 * 126.10539 * 0.02562 * 4 3 2 27 27 H 0.96998 * 119.99988 * 179.71986 * 6 5 4 28 28 H 0.96999 * 119.99151 * 0.27436 * 9 7 6 29 29 H 1.08997 * 109.47137 * 300.00393 * 10 9 7 30 30 H 1.09009 * 109.47116 * 60.00188 * 10 9 7 31 31 H 1.09005 * 109.47148 * 299.99952 * 11 10 9 32 32 H 1.08994 * 109.47337 * 60.00336 * 11 10 9 33 33 H 0.97000 * 120.00319 * 179.97438 * 15 14 12 34 34 H 1.08995 * 109.46961 * 277.03410 * 22 21 3 35 35 H 1.09001 * 109.46881 * 37.03416 * 22 21 3 36 36 H 1.09004 * 109.46914 * 157.03527 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 3.3867 1.4253 0.0050 5 6 3.5978 2.8128 0.0062 6 7 4.8435 3.4552 0.0143 7 6 5.9774 2.7268 0.0276 8 8 5.9197 1.5122 0.0322 9 7 7.1753 3.3445 0.0298 10 6 8.4078 2.5526 0.0382 11 6 9.6166 3.4905 0.0396 12 6 10.8844 2.6760 0.0476 13 1 10.8332 1.5971 0.0509 14 6 12.1098 3.3079 0.0497 15 7 12.1723 4.6216 0.0452 16 14 13.6814 2.2982 0.0604 17 1 13.7243 1.4364 -1.1482 18 1 14.8546 3.2085 0.0617 19 1 13.7146 1.4469 1.2768 20 7 2.4265 3.4041 -0.0074 21 7 1.4346 2.4153 -0.0114 22 6 -0.0119 2.6473 -0.0249 23 1 -0.3633 -1.0173 -0.1461 24 1 -0.3634 0.3821 0.9540 25 1 -0.3634 0.6351 -0.8079 26 1 4.1536 0.6649 0.0093 27 1 4.8896 4.4241 0.0103 28 1 7.2213 4.3134 0.0257 29 1 8.4321 1.9278 0.9309 30 1 8.4393 1.9201 -0.8490 31 1 9.5924 4.1157 -0.8530 32 1 9.5849 4.1227 0.9269 33 1 13.0344 5.0662 0.0471 34 1 -0.3819 2.5753 -1.0476 35 1 -0.5058 1.8980 0.5937 36 1 -0.2241 3.6412 0.3691 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548495048.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:46 Heat of formation + Delta-G solvation = 34.522179 kcal Electronic energy + Delta-G solvation = -19632.383868 eV Core-core repulsion = 16348.210928 eV Total energy + Delta-G solvation = -3284.172940 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.68805 -39.79205 -38.34255 -35.26431 -34.52810 -33.05427 -32.51208 -30.02288 -29.40836 -27.64068 -26.13207 -24.72216 -22.21201 -21.53039 -20.82383 -20.20761 -18.42932 -17.73636 -16.88171 -16.45244 -16.06685 -15.45911 -15.40137 -15.00728 -14.62332 -14.50425 -14.32465 -13.93620 -13.65991 -13.59350 -13.11538 -12.93163 -12.26481 -11.84537 -11.65928 -11.19396 -11.01566 -10.65426 -10.63647 -10.48007 -10.25594 -9.85775 -9.56507 -9.26949 -8.65835 -8.41580 -8.35232 -8.11291 -6.07701 -4.10490 1.76843 1.97387 2.63420 2.73904 3.03683 3.33378 3.37092 3.40739 3.65209 4.18633 4.38995 4.45867 4.54643 4.65147 4.75517 4.87198 5.10867 5.26715 5.29500 5.36017 5.62856 6.02241 6.22724 6.35596 6.38356 6.76116 6.86605 6.91947 7.00237 7.30724 7.54117 7.63562 7.69275 7.90992 8.22645 8.33833 8.81789 8.95608 9.54260 11.03914 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.055086 B = 0.002887 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.178232 B = 9695.660419 C =10172.764232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.289 6.289 3 C 0.277 3.723 4 C -0.279 4.279 5 C 0.353 3.647 6 N -0.651 5.651 7 C 0.706 3.294 8 O -0.569 6.569 9 N -0.728 5.728 10 C 0.139 3.861 11 C 0.012 3.988 12 C -0.522 4.522 13 H 0.060 0.940 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.898 3.102 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 N -0.328 5.328 21 N -0.404 5.404 22 C 0.086 3.914 23 H 0.106 0.894 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.183 0.817 27 H 0.412 0.588 28 H 0.397 0.603 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.263 0.737 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.492 -2.819 -0.068 25.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.195 6.195 3 C 0.109 3.891 4 C -0.310 4.310 5 C 0.096 3.904 6 N -0.303 5.303 7 C 0.405 3.595 8 O -0.445 6.445 9 N -0.382 5.382 10 C 0.017 3.983 11 C -0.025 4.025 12 C -0.560 4.560 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.201 1.201 20 N -0.163 5.163 21 N -0.201 5.201 22 C -0.054 4.054 23 H 0.124 0.876 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.200 0.800 27 H 0.247 0.753 28 H 0.230 0.770 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -25.951 -3.026 -0.075 26.127 hybrid contribution 0.953 -0.030 -0.005 0.954 sum -24.998 -3.056 -0.080 25.184 Atomic orbital electron populations 1.23614 0.78466 1.05033 1.01281 1.86306 1.21180 1.22099 1.89909 1.19606 0.91042 0.78769 0.99645 1.20864 0.92085 0.96109 1.21905 1.18393 0.85220 0.90445 0.96315 1.41799 1.01402 1.09983 1.77070 1.15853 0.79991 0.85380 0.78269 1.90841 1.85535 1.11481 1.56658 1.45533 1.04526 1.10478 1.77641 1.21703 0.80915 0.94634 1.01070 1.19334 0.90451 0.94763 0.97953 1.21006 0.90329 0.93242 1.51458 0.92188 1.24993 0.99339 0.94958 0.94982 1.69944 1.25419 1.07674 1.50313 0.86563 0.82244 0.79874 0.78802 1.20090 1.21290 1.20093 1.77438 0.93910 1.09918 1.34997 1.48337 1.05994 1.02439 1.63294 1.22348 0.75131 1.05034 1.02924 0.87555 0.92042 0.91903 0.80026 0.75286 0.76987 0.92352 0.92346 0.95852 0.95847 0.92788 0.90982 0.89086 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.42 101.05 0.95 1.01 16 2 O -0.29 -3.33 10.57 -18.95 -0.20 -3.53 16 3 C 0.28 3.80 7.78 -16.93 -0.13 3.67 16 4 C -0.28 -4.62 9.63 -39.64 -0.38 -5.00 16 5 C 0.35 5.61 8.10 -154.41 -1.25 4.36 16 6 N -0.65 -9.58 5.45 -15.53 -0.08 -9.67 16 7 C 0.71 12.51 8.53 -86.92 -0.74 11.77 16 8 O -0.57 -11.93 13.47 5.28 0.07 -11.86 16 9 N -0.73 -12.59 5.56 -65.23 -0.36 -12.95 16 10 C 0.14 2.91 5.61 -4.05 -0.02 2.89 16 11 C 0.01 0.31 5.09 -27.89 -0.14 0.16 16 12 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 13 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 16 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 N -0.33 -4.78 12.58 31.43 0.40 -4.39 16 21 N -0.40 -4.91 4.02 -68.29 -0.27 -5.19 16 22 C 0.09 0.56 9.58 59.85 0.57 1.14 16 23 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.26 6.45 -51.93 -0.33 -0.07 16 25 H 0.06 0.28 5.91 -51.93 -0.31 -0.03 16 26 H 0.18 3.37 5.91 -52.48 -0.31 3.06 16 27 H 0.41 4.73 8.84 -40.82 -0.36 4.37 16 28 H 0.40 5.79 8.49 -40.82 -0.35 5.45 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 31 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.07 0.35 7.57 -51.93 -0.39 -0.04 16 35 H 0.09 0.37 4.68 -51.93 -0.24 0.12 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 306.84 15.07 4.62 4.62 Total: -1.00 -34.40 306.84 -6.04 -40.44 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -4.37 Total: 4.62 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -1.56 Total: 6.88 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.41 Total: -57.51 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.13 Total: -15.39 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.40 -6.04 -40.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548495048.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.967 kcal (2) G-P(sol) polarization free energy of solvation -34.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds