Wall clock time and date at job start Mon Mar 30 2020 06:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35749 * 117.00012 * 2 1 4 4 C 1.35864 * 126.13795 * 179.73874 * 3 2 1 5 5 C 1.40344 * 107.78913 * 180.13587 * 4 3 2 6 6 N 1.40167 * 125.93137 * 179.83159 * 5 4 3 7 7 C 1.34774 * 120.00221 * 359.71681 * 6 5 4 8 8 O 1.21593 * 119.99916 * 0.02562 * 7 6 5 9 9 N 1.34782 * 120.00342 * 179.72275 * 7 6 5 10 10 C 1.46496 * 120.00278 * 180.27628 * 9 7 6 11 11 C 1.52994 * 109.47156 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47125 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00378 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00093 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00153 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00145 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47050 * 60.00072 * 16 14 12 18 18 H 1.48495 * 109.46956 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46908 * 300.00336 * 16 14 12 20 20 N 1.31214 * 108.13265 * 359.56963 * 5 4 3 21 21 N 1.35167 * 126.13566 * 359.40077 * 3 2 1 22 22 C 1.46504 * 125.97809 * 0.05203 * 21 3 2 23 23 H 1.09004 * 109.47150 * 171.82607 * 1 2 3 24 24 H 1.09005 * 109.47334 * 291.82551 * 1 2 3 25 25 H 1.09003 * 109.47186 * 51.82772 * 1 2 3 26 26 H 1.08004 * 126.10539 * 0.02562 * 4 3 2 27 27 H 0.96998 * 119.99988 * 179.71986 * 6 5 4 28 28 H 0.96999 * 119.99151 * 0.27436 * 9 7 6 29 29 H 1.08997 * 109.47137 * 300.00393 * 10 9 7 30 30 H 1.09009 * 109.47116 * 60.00188 * 10 9 7 31 31 H 1.09005 * 109.47148 * 299.99952 * 11 10 9 32 32 H 1.08994 * 109.47337 * 60.00336 * 11 10 9 33 33 H 0.97000 * 120.00319 * 179.97438 * 15 14 12 34 34 H 1.08995 * 109.46961 * 277.03410 * 22 21 3 35 35 H 1.09001 * 109.46881 * 37.03416 * 22 21 3 36 36 H 1.09004 * 109.46914 * 157.03527 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 3.3867 1.4253 0.0050 5 6 3.5978 2.8128 0.0062 6 7 4.8435 3.4552 0.0143 7 6 5.9774 2.7268 0.0276 8 8 5.9197 1.5122 0.0322 9 7 7.1753 3.3445 0.0298 10 6 8.4078 2.5526 0.0382 11 6 9.6166 3.4905 0.0396 12 6 10.8844 2.6760 0.0476 13 1 10.8332 1.5971 0.0509 14 6 12.1098 3.3079 0.0497 15 7 12.1723 4.6216 0.0452 16 14 13.6814 2.2982 0.0604 17 1 13.7243 1.4364 -1.1482 18 1 14.8546 3.2085 0.0617 19 1 13.7146 1.4469 1.2768 20 7 2.4265 3.4041 -0.0074 21 7 1.4346 2.4153 -0.0114 22 6 -0.0119 2.6473 -0.0249 23 1 -0.3633 -1.0173 -0.1461 24 1 -0.3634 0.3821 0.9540 25 1 -0.3634 0.6351 -0.8079 26 1 4.1536 0.6649 0.0093 27 1 4.8896 4.4241 0.0103 28 1 7.2213 4.3134 0.0257 29 1 8.4321 1.9278 0.9309 30 1 8.4393 1.9201 -0.8490 31 1 9.5924 4.1157 -0.8530 32 1 9.5849 4.1227 0.9269 33 1 13.0344 5.0662 0.0471 34 1 -0.3819 2.5753 -1.0476 35 1 -0.5058 1.8980 0.5937 36 1 -0.2241 3.6412 0.3691 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548495048.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:46 Heat of formation + Delta-G solvation = 7.792848 kcal Electronic energy + Delta-G solvation = -19633.542938 eV Core-core repulsion = 16348.210928 eV Total energy + Delta-G solvation = -3285.332011 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.72735 -41.13442 -39.28260 -36.80442 -35.90835 -34.85519 -33.62467 -31.46905 -30.77792 -28.44749 -27.09530 -26.39082 -23.65028 -22.73971 -22.35145 -21.49152 -19.62621 -18.88643 -18.40657 -17.69016 -17.29218 -16.79852 -16.51808 -16.27764 -16.14628 -15.59162 -15.51263 -15.19990 -15.01777 -14.51778 -14.24841 -14.09378 -13.90222 -13.19047 -12.94652 -12.68697 -12.51329 -12.32152 -12.19458 -11.66065 -11.60629 -11.45091 -11.37639 -11.14471 -10.57105 -10.11282 -9.42820 -9.28525 -8.20943 -6.30814 0.70418 0.94393 1.44653 1.46918 1.50085 1.54447 1.61139 2.13993 2.29206 2.43927 3.14219 3.15856 3.59930 4.05146 4.12397 4.33674 4.34689 4.41781 4.46625 4.54296 4.56380 4.58564 4.74485 4.90579 5.04429 5.17764 5.31783 5.52349 5.63642 5.65254 5.80607 5.85325 6.19623 6.40219 6.52399 6.82530 7.01131 7.38151 7.42583 8.90785 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.055086 B = 0.002887 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.178232 B = 9695.660419 C =10172.764232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 O -0.305 6.305 3 C 0.293 3.707 4 C -0.324 4.324 5 C 0.336 3.664 6 N -0.636 5.636 7 C 0.709 3.291 8 O -0.603 6.603 9 N -0.720 5.720 10 C 0.160 3.840 11 C 0.023 3.977 12 C -0.546 4.546 13 H 0.061 0.939 14 C 0.007 3.993 15 N -0.927 5.927 16 Si 0.964 3.036 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.269 1.269 20 N -0.332 5.332 21 N -0.393 5.393 22 C 0.070 3.930 23 H 0.129 0.871 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.154 0.846 27 H 0.427 0.573 28 H 0.411 0.589 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.010 0.990 32 H 0.011 0.989 33 H 0.265 0.735 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.451 -3.086 -0.079 27.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.211 6.211 3 C 0.123 3.877 4 C -0.355 4.355 5 C 0.080 3.920 6 N -0.288 5.288 7 C 0.408 3.592 8 O -0.481 6.481 9 N -0.375 5.375 10 C 0.036 3.964 11 C -0.015 4.015 12 C -0.584 4.584 13 H 0.079 0.921 14 C -0.192 4.192 15 N -0.567 5.567 16 Si 0.789 3.211 17 H -0.193 1.193 18 H -0.207 1.207 19 H -0.193 1.193 20 N -0.167 5.167 21 N -0.190 5.190 22 C -0.068 4.068 23 H 0.147 0.853 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.171 0.829 27 H 0.265 0.735 28 H 0.247 0.753 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.138 0.862 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -27.979 -3.249 -0.087 28.167 hybrid contribution 1.324 0.014 -0.004 1.324 sum -26.655 -3.234 -0.092 26.851 Atomic orbital electron populations 1.24093 0.75315 1.07312 1.03119 1.86322 1.24474 1.20891 1.89440 1.19405 0.90599 0.79996 0.97659 1.20691 0.93293 0.96084 1.25444 1.18473 0.85617 0.90411 0.97537 1.41451 1.00541 1.10533 1.76307 1.15831 0.80487 0.84986 0.77897 1.90840 1.86112 1.13136 1.57993 1.45168 1.03562 1.10959 1.77785 1.21197 0.81133 0.93795 1.00279 1.19141 0.91155 0.94615 0.96574 1.21450 0.91819 0.93728 1.51433 0.92103 1.25856 1.02755 0.96062 0.94494 1.70051 1.26356 1.09185 1.51088 0.85514 0.78087 0.78414 0.79134 1.19341 1.20732 1.19349 1.77360 0.93787 1.10820 1.34764 1.48738 1.07469 1.01384 1.61414 1.22909 0.71904 1.06767 1.05219 0.85260 0.90079 0.90076 0.82885 0.73450 0.75299 0.93162 0.93162 0.97116 0.97103 0.92588 0.88717 0.86159 0.87805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.04 9.42 113.37 1.07 1.03 16 2 O -0.31 -6.60 10.57 -90.74 -0.96 -7.56 16 3 C 0.29 7.82 7.78 83.63 0.65 8.47 16 4 C -0.32 -11.04 9.63 22.23 0.21 -10.83 16 5 C 0.34 10.72 8.10 133.31 1.08 11.80 16 6 N -0.64 -18.81 5.45 -321.29 -1.75 -20.56 16 7 C 0.71 25.61 8.53 179.05 1.53 27.13 16 8 O -0.60 -26.21 13.47 -4.01 -0.05 -26.27 16 9 N -0.72 -25.17 5.56 -478.53 -2.66 -27.83 16 10 C 0.16 6.82 5.61 86.38 0.48 7.31 16 11 C 0.02 1.13 5.09 29.85 0.15 1.29 16 12 C -0.55 -30.34 9.11 25.60 0.23 -30.11 16 13 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 14 C 0.01 0.39 5.46 84.65 0.46 0.86 16 15 N -0.93 -54.35 13.29 21.45 0.28 -54.07 16 16 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 N -0.33 -9.32 12.58 -54.49 -0.69 -10.01 16 21 N -0.39 -8.77 4.02 -481.29 -1.93 -10.70 16 22 C 0.07 0.66 9.58 127.77 1.22 1.89 16 23 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.08 0.37 6.45 -2.38 -0.02 0.36 16 25 H 0.08 0.40 5.91 -2.39 -0.01 0.38 16 26 H 0.15 6.08 5.91 -2.91 -0.02 6.06 16 27 H 0.43 9.58 8.84 -92.71 -0.82 8.76 16 28 H 0.41 11.96 8.49 -92.71 -0.79 11.18 16 29 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 34 H 0.09 0.54 7.57 -2.39 -0.02 0.52 16 35 H 0.12 0.44 4.68 -2.39 -0.01 0.43 16 36 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -75.61 306.84 0.89 -74.72 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -0.47 Total: 17.76 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 7.10 Total: 18.83 kcal Atomic # 7 Polarization: -116.42 SS G_CDS: -6.75 Total: -123.17 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -1.01 Total: -33.82 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -75.61 0.89 -74.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548495048.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.509 kcal (2) G-P(sol) polarization free energy of solvation -75.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds