Wall clock time and date at job start Mon Mar 30 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46825 * 2 1 4 4 C 1.50707 * 109.47109 * 119.99489 * 2 1 3 5 5 H 1.07998 * 120.00096 * 84.94312 * 4 2 1 6 6 C 1.37880 * 119.99700 * 264.95049 * 4 2 1 7 7 N 1.31520 * 119.99654 * 175.17311 * 6 4 2 8 8 Si 1.86797 * 120.00257 * 355.16743 * 6 4 2 9 9 H 1.48503 * 109.47240 * 274.88403 * 8 6 4 10 10 H 1.48500 * 109.46883 * 34.88602 * 8 6 4 11 11 H 1.48497 * 109.46908 * 154.88318 * 8 6 4 12 12 C 1.50695 * 109.47409 * 239.99275 * 2 1 3 13 13 O 1.21278 * 120.00584 * 239.99655 * 12 2 1 14 14 N 1.34785 * 119.99699 * 60.00300 * 12 2 1 15 15 C 1.46496 * 119.99595 * 179.97438 * 14 12 2 16 16 C 1.53003 * 109.46770 * 179.97438 * 15 14 12 17 17 N 1.46505 * 109.47234 * 180.02562 * 16 15 14 18 18 C 1.33874 * 122.76047 * 269.71408 * 17 16 15 19 19 O 1.21235 * 125.39713 * 359.97321 * 18 17 16 20 20 C 1.51316 * 109.20601 * 179.84300 * 18 17 16 21 21 C 1.54228 * 103.55404 * 0.38298 * 20 18 17 22 22 C 1.33874 * 122.76189 * 90.00169 * 17 16 15 23 23 O 1.21221 * 125.39672 * 359.97438 * 22 17 16 24 24 H 1.08995 * 109.47091 * 54.88616 * 1 2 3 25 25 H 1.09005 * 109.46601 * 174.87871 * 1 2 3 26 26 H 1.08995 * 109.47670 * 294.87883 * 1 2 3 27 27 H 0.96998 * 119.99707 * 180.02562 * 7 6 4 28 28 H 0.96997 * 119.99909 * 359.97438 * 14 12 2 29 29 H 1.08994 * 109.48016 * 299.99947 * 15 14 12 30 30 H 1.09008 * 109.47291 * 60.00529 * 15 14 12 31 31 H 1.08998 * 109.47235 * 300.00114 * 16 15 14 32 32 H 1.08998 * 109.47055 * 60.00544 * 16 15 14 33 33 H 1.09001 * 110.79098 * 241.77373 * 20 18 17 34 34 H 1.08996 * 110.54865 * 118.87264 * 20 18 17 35 35 H 1.09000 * 110.60468 * 241.26368 * 21 20 18 36 36 H 1.08995 * 110.60567 * 118.29492 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.1346 -1.7855 1.2296 6 6 2.3612 0.0125 2.3578 7 7 2.7086 -0.6126 3.4615 8 14 2.3135 1.8794 2.3171 9 1 3.6008 2.3960 1.7868 10 1 1.2016 2.3271 1.4406 11 1 2.1002 2.3991 3.6917 12 6 2.0324 -0.7105 -1.2303 13 8 2.7297 -1.6965 -1.1190 14 7 1.7068 -0.2501 -2.4545 15 6 2.1957 -0.9405 -3.6505 16 6 1.6851 -0.2198 -4.8999 17 7 2.1735 -0.9105 -6.0960 18 6 3.3312 -0.5980 -6.6911 19 8 4.0966 0.2688 -6.3267 20 6 3.5348 -1.5002 -7.8887 21 6 2.2758 -2.3911 -7.8883 22 6 1.4960 -1.9024 -6.6872 23 8 0.4274 -2.3400 -6.3183 24 1 -0.3633 0.5911 -0.8406 25 1 -0.3633 -1.0236 -0.0917 26 1 -0.3634 0.4323 0.9322 27 1 2.9396 -0.1042 4.2546 28 1 1.1489 0.5383 -2.5436 29 1 3.2856 -0.9402 -3.6504 30 1 1.8327 -1.9684 -3.6507 31 1 0.5951 -0.2206 -4.8999 32 1 2.0478 0.8081 -4.9000 33 1 4.4333 -2.1056 -7.7689 34 1 3.5888 -0.9129 -8.8054 35 1 2.5480 -3.4397 -7.7682 36 1 1.7022 -2.2450 -8.8034 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597233593.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:08 Heat of formation + Delta-G solvation = -104.952355 kcal Electronic energy + Delta-G solvation = -20203.527999 eV Core-core repulsion = 16881.014238 eV Total energy + Delta-G solvation = -3322.513761 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.18956 -38.91086 -38.87129 -36.25193 -35.20159 -33.64299 -33.12769 -31.27716 -28.77754 -26.56292 -25.24056 -24.02022 -22.73158 -21.94527 -20.07129 -19.16719 -17.60103 -17.30552 -17.01478 -16.79002 -16.01086 -15.43013 -15.02699 -14.78253 -14.54134 -14.33826 -14.26713 -13.98927 -13.65422 -13.17005 -13.01294 -12.47771 -12.40999 -12.20024 -11.82789 -11.63695 -11.29853 -11.08794 -10.99516 -10.76964 -10.36828 -10.27147 -10.11286 -9.80033 -9.15657 -8.71594 -8.59900 -8.52352 -6.05261 -4.04621 1.17170 2.09254 2.36058 3.26022 3.32341 3.35145 3.62817 3.66936 3.74546 3.88766 3.99634 4.38900 4.39751 4.71382 4.71698 5.00167 5.08887 5.13334 5.13875 5.20763 5.25469 5.71282 5.76620 6.06297 6.14266 6.41637 6.48158 6.53591 6.83555 6.90301 6.96994 7.19016 7.42122 7.56132 8.11467 8.55235 9.10187 9.13636 9.54108 11.08069 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.034005 B = 0.003922 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.212437 B = 7137.145398 C = 7361.786787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.004 4.004 3 H 0.055 0.945 4 C -0.496 4.496 5 H 0.086 0.914 6 C 0.071 3.929 7 N -0.895 5.895 8 Si 0.872 3.128 9 H -0.275 1.275 10 H -0.264 1.264 11 H -0.286 1.286 12 C 0.521 3.479 13 O -0.527 6.527 14 N -0.746 5.746 15 C 0.109 3.891 16 C 0.088 3.912 17 N -0.571 5.571 18 C 0.524 3.476 19 O -0.476 6.476 20 C -0.156 4.156 21 C -0.156 4.156 22 C 0.524 3.476 23 O -0.476 6.476 24 H 0.026 0.974 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.265 0.735 28 H 0.395 0.605 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.305 1.529 -25.776 25.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.025 4.025 3 H 0.073 0.927 4 C -0.534 4.534 5 H 0.104 0.896 6 C -0.131 4.131 7 N -0.533 5.533 8 Si 0.699 3.301 9 H -0.201 1.201 10 H -0.189 1.189 11 H -0.212 1.212 12 C 0.309 3.691 13 O -0.401 6.401 14 N -0.402 5.402 15 C -0.017 4.017 16 C -0.034 4.034 17 N -0.315 5.315 18 C 0.313 3.687 19 O -0.347 6.347 20 C -0.196 4.196 21 C -0.196 4.196 22 C 0.313 3.687 23 O -0.347 6.347 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.229 0.771 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.889 1.048 -25.041 25.134 hybrid contribution -0.202 1.415 0.079 1.431 sum -2.091 2.463 -24.962 25.170 Atomic orbital electron populations 1.21946 0.96687 1.00571 0.99897 1.19355 0.94121 0.96988 0.92076 0.92693 1.20744 1.43061 0.96214 0.93351 0.89642 1.25032 0.94637 0.98065 0.95325 1.69888 1.45992 1.35700 1.01680 0.86947 0.79023 0.86652 0.77476 1.20097 1.18898 1.21234 1.21828 0.78944 0.84583 0.83738 1.90587 1.36821 1.26286 1.86394 1.46181 1.55913 1.32837 1.05306 1.21372 0.99726 0.96779 0.83794 1.21949 1.01324 0.97309 0.82773 1.46668 1.22411 1.34800 1.27620 1.20887 0.79662 0.83488 0.84655 1.90822 1.45683 1.31129 1.67019 1.22475 1.00471 0.98375 0.98276 1.22479 0.96089 1.02799 0.98220 1.20884 0.84879 0.78200 0.84715 1.90815 1.19807 1.57094 1.66944 0.95464 0.93207 0.92351 0.92538 0.77095 0.91537 0.91537 0.88166 0.88179 0.85938 0.86128 0.85956 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.03 37.16 0.34 -2.34 16 2 C 0.00 -0.08 2.30 -92.92 -0.21 -0.30 16 3 H 0.06 1.25 5.29 -51.93 -0.27 0.98 16 4 C -0.50 -14.46 8.36 -34.44 -0.29 -14.75 16 5 H 0.09 2.84 7.61 -52.49 -0.40 2.44 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.89 -27.87 13.96 55.43 0.77 -27.10 16 8 Si 0.87 21.13 27.00 -169.99 -4.59 16.54 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.26 -5.87 6.81 56.52 0.38 -5.49 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.52 11.80 7.15 -10.98 -0.08 11.72 16 13 O -0.53 -14.23 15.77 5.56 0.09 -14.15 16 14 N -0.75 -12.57 5.46 -60.29 -0.33 -12.90 16 15 C 0.11 1.63 6.00 -4.04 -0.02 1.61 16 16 C 0.09 0.97 5.67 -4.04 -0.02 0.95 16 17 N -0.57 -5.61 2.55 -115.34 -0.29 -5.91 16 18 C 0.52 4.85 8.08 -11.09 -0.09 4.76 16 19 O -0.48 -6.25 17.47 5.60 0.10 -6.15 16 20 C -0.16 -0.64 7.03 -26.94 -0.19 -0.83 16 21 C -0.16 -0.63 7.03 -26.94 -0.19 -0.82 16 22 C 0.52 4.82 8.08 -11.09 -0.09 4.73 16 23 O -0.48 -6.18 17.48 5.61 0.10 -6.08 16 24 H 0.03 0.43 7.71 -51.93 -0.40 0.03 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.40 5.34 7.99 -40.82 -0.33 5.01 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 31 H 0.10 1.02 7.83 -51.93 -0.41 0.61 16 32 H 0.10 1.03 7.82 -51.93 -0.41 0.62 16 33 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 312.58 15.07 4.71 4.71 Total: -1.00 -38.22 312.58 -5.14 -43.36 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.75 Total: 0.96 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -0.95 Total: 6.72 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.15 Total: -45.90 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: 0.28 Total: -26.38 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.59 Total: 16.54 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -38.22 -5.14 -43.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597233593.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.592 kcal (2) G-P(sol) polarization free energy of solvation -38.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds