Wall clock time and date at job start Mon Mar 30 2020 05:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47173 * 299.99471 * 3 2 1 6 6 H 1.48498 * 109.47243 * 59.99961 * 3 2 1 7 7 C 1.37878 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.53950 * 113.74161 * 81.25908 * 9 7 2 11 11 N 1.47925 * 85.99684 * 138.00415 * 10 9 7 12 12 C 1.34780 * 134.49772 * 155.35643 * 11 10 9 13 13 O 1.21284 * 119.99485 * 179.97438 * 12 11 10 14 14 C 1.50693 * 120.00205 * 0.02562 * 12 11 10 15 15 N 1.46501 * 109.47055 * 180.02562 * 14 12 11 16 16 C 1.46099 * 118.72552 * 269.72940 * 15 14 12 17 17 C 1.53185 * 109.82372 * 161.46035 * 16 15 14 18 18 O 1.43244 * 108.53881 * 49.52081 * 17 16 15 19 19 C 1.42968 * 112.98349 * 291.48567 * 18 17 16 20 20 C 1.33873 * 118.73223 * 89.99958 * 15 14 12 21 21 O 1.21280 * 118.83339 * 1.87981 * 20 15 14 22 22 C 1.47579 * 91.00789 * 335.35638 * 11 10 9 23 23 H 0.96999 * 119.99516 * 0.02562 * 1 2 3 24 24 H 1.09002 * 112.94317 * 309.66485 * 9 7 2 25 25 H 1.09006 * 113.76402 * 252.36573 * 10 9 7 26 26 H 1.08997 * 113.76968 * 23.75198 * 10 9 7 27 27 H 1.09003 * 109.47319 * 299.99914 * 14 12 11 28 28 H 1.09001 * 109.47328 * 59.99726 * 14 12 11 29 29 H 1.08997 * 109.39409 * 281.78033 * 16 15 14 30 30 H 1.08995 * 109.39324 * 41.50353 * 16 15 14 31 31 H 1.08996 * 109.79741 * 289.72776 * 17 16 15 32 32 H 1.09005 * 109.54111 * 169.15539 * 17 16 15 33 33 H 1.09002 * 109.41191 * 289.48975 * 19 18 17 34 34 H 1.09003 * 109.41696 * 169.70639 * 19 18 17 35 35 H 1.09003 * 113.77049 * 270.34039 * 22 11 10 36 36 H 1.08993 * 113.77081 * 138.93800 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.7561 -2.9292 -1.3924 11 7 1.1904 -4.2911 -1.0121 12 6 0.8406 -5.5354 -1.3942 13 8 1.3838 -6.4981 -0.8953 14 6 -0.2246 -5.7303 -2.4422 15 7 -0.4205 -7.1627 -2.6789 16 6 0.3769 -7.8191 -3.7122 17 6 0.3669 -9.3350 -3.4915 18 8 -0.9894 -9.7603 -3.3136 19 6 -1.5641 -9.2958 -2.0897 20 6 -1.3271 -7.8184 -1.9438 21 8 -1.9800 -7.1987 -1.1311 22 6 2.1608 -3.7402 -0.0462 23 1 -0.4849 0.8401 -0.0004 24 1 0.4833 -2.5466 0.7730 25 1 -0.3213 -2.8307 -1.5255 26 1 1.3285 -2.4988 -2.2141 27 1 -1.1593 -5.2883 -2.0968 28 1 0.0848 -5.2474 -3.3691 29 1 -0.0411 -7.5897 -4.6923 30 1 1.4030 -7.4548 -3.6634 31 1 0.9474 -9.5825 -2.6028 32 1 0.7951 -9.8329 -4.3614 33 1 -1.1055 -9.8208 -1.2518 34 1 -2.6364 -9.4919 -2.0955 35 1 3.1449 -3.5476 -0.4734 36 1 2.2040 -4.2889 0.8945 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598023066.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:43 Heat of formation + Delta-G solvation = -68.330889 kcal Electronic energy + Delta-G solvation = -20613.880528 eV Core-core repulsion = 17292.954794 eV Total energy + Delta-G solvation = -3320.925735 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.82138 -39.22086 -37.78464 -37.02179 -35.21085 -32.70089 -30.67272 -29.86367 -28.47302 -26.23568 -25.14351 -24.66751 -23.92833 -20.51290 -19.22065 -18.32970 -17.83025 -17.07771 -16.96278 -16.53620 -15.89296 -15.54342 -15.23436 -14.81939 -14.60258 -14.25689 -14.03024 -13.59812 -13.42906 -13.17761 -12.44035 -12.13305 -11.92664 -11.90268 -11.63057 -11.46418 -11.24252 -10.99772 -10.82191 -10.70449 -10.44544 -9.83979 -9.56875 -9.34475 -9.17873 -8.68527 -8.55609 -7.89840 -6.19983 -4.26127 2.40268 2.69053 3.10301 3.21187 3.30388 3.33477 3.46321 3.64564 4.17757 4.31558 4.55052 4.76150 4.92055 4.96881 5.05599 5.11164 5.22920 5.23546 5.35775 5.47320 5.58671 5.99537 6.07973 6.16839 6.24826 6.36464 6.49991 6.53906 6.63117 6.77836 7.25115 7.53632 7.77601 7.98952 8.13978 8.45079 8.68590 8.77631 9.41042 10.89637 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.045738 B = 0.003855 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.035328 B = 7261.228356 C = 7429.208750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.064 0.936 9 C 0.033 3.967 10 C 0.102 3.898 11 N -0.639 5.639 12 C 0.512 3.488 13 O -0.563 6.563 14 C 0.095 3.905 15 N -0.586 5.586 16 C 0.083 3.917 17 C 0.045 3.955 18 O -0.373 6.373 19 C 0.053 3.947 20 C 0.491 3.509 21 O -0.536 6.536 22 C 0.105 3.895 23 H 0.264 0.736 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.115 0.885 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.130 0.870 35 H 0.074 0.926 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.273 -14.152 -9.398 16.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.082 0.918 9 C 0.014 3.986 10 C -0.020 4.020 11 N -0.373 5.373 12 C 0.299 3.701 13 O -0.444 6.444 14 C -0.031 4.031 15 N -0.319 5.319 16 C -0.040 4.040 17 C -0.032 4.032 18 O -0.291 6.291 19 C -0.026 4.026 20 C 0.279 3.721 21 O -0.413 6.413 22 C -0.017 4.017 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.133 0.867 28 H 0.123 0.877 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.133 0.867 33 H 0.109 0.891 34 H 0.148 0.852 35 H 0.092 0.908 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.663 -14.541 -8.918 17.070 hybrid contribution 0.653 1.209 0.039 1.375 sum -0.009 -13.332 -8.878 16.017 Atomic orbital electron populations 1.69964 1.06050 1.27054 1.49154 1.25029 0.94861 0.99386 0.94303 0.86484 0.80160 0.83347 0.77726 1.19600 1.20901 1.20868 1.21005 0.93069 0.89657 1.52101 0.91813 1.20503 0.94158 0.91397 0.92534 1.23821 0.99548 0.76313 1.02273 1.50554 1.40271 1.04776 1.41704 1.20595 0.83934 0.82267 0.83270 1.90608 1.56692 1.39697 1.57355 1.21305 1.00604 0.82014 0.99157 1.47035 1.38672 1.09235 1.36999 1.22192 0.97005 0.93731 0.91048 1.23039 0.83818 0.92839 1.03538 1.88153 1.27118 1.74668 1.39170 1.22811 1.01869 0.89274 0.88636 1.20945 0.79504 0.91057 0.80637 1.90768 1.47668 1.67746 1.35150 1.23485 0.93777 0.93732 0.90734 0.92651 0.91778 0.91569 0.90468 0.86696 0.87696 0.90491 0.89490 0.91349 0.86679 0.89066 0.85200 0.90777 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.98 13.29 55.43 0.74 -23.24 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -13.14 8.77 -34.44 -0.30 -13.45 16 8 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.03 0.78 3.60 -90.84 -0.33 0.45 16 10 C 0.10 2.12 8.19 -2.77 -0.02 2.10 16 11 N -0.64 -13.05 3.62 -178.12 -0.64 -13.69 16 12 C 0.51 10.10 8.12 -10.99 -0.09 10.01 16 13 O -0.56 -12.59 17.16 5.55 0.10 -12.49 16 14 C 0.10 1.50 5.55 -5.20 -0.03 1.47 16 15 N -0.59 -8.44 2.32 -175.69 -0.41 -8.85 16 16 C 0.08 0.85 6.63 -4.16 -0.03 0.82 16 17 C 0.04 0.39 6.91 37.25 0.26 0.65 16 18 O -0.37 -3.94 10.85 -35.23 -0.38 -4.32 16 19 C 0.05 0.60 6.98 35.83 0.25 0.85 16 20 C 0.49 7.63 7.58 -11.56 -0.09 7.54 16 21 O -0.54 -10.50 16.36 5.56 0.09 -10.40 16 22 C 0.10 2.19 8.39 -2.96 -0.02 2.17 16 23 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 24 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 25 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 27 H 0.12 1.94 7.23 -51.93 -0.38 1.56 16 28 H 0.11 1.31 8.04 -51.93 -0.42 0.89 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.88 8.13 -51.93 -0.42 0.45 16 31 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 32 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.47 8.09 -51.93 -0.42 1.05 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 311.42 15.07 4.69 4.69 Total: -1.00 -32.46 311.42 -6.32 -38.78 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.98 Total: 0.38 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: -0.50 Total: 14.27 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -0.32 Total: -45.78 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.20 Total: -27.22 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.46 -6.32 -38.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598023066.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.555 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds