Wall clock time and date at job start Mon Mar 30 2020 05:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47173 * 299.99471 * 3 2 1 6 6 H 1.48498 * 109.47243 * 59.99961 * 3 2 1 7 7 C 1.37878 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.53950 * 113.74161 * 81.25908 * 9 7 2 11 11 N 1.47925 * 85.99684 * 138.00415 * 10 9 7 12 12 C 1.34780 * 134.49772 * 155.35643 * 11 10 9 13 13 O 1.21284 * 119.99485 * 179.97438 * 12 11 10 14 14 C 1.50693 * 120.00205 * 0.02562 * 12 11 10 15 15 N 1.46501 * 109.47055 * 180.02562 * 14 12 11 16 16 C 1.46099 * 118.72552 * 269.72940 * 15 14 12 17 17 C 1.53185 * 109.82372 * 161.46035 * 16 15 14 18 18 O 1.43244 * 108.53881 * 49.52081 * 17 16 15 19 19 C 1.42968 * 112.98349 * 291.48567 * 18 17 16 20 20 C 1.33873 * 118.73223 * 89.99958 * 15 14 12 21 21 O 1.21280 * 118.83339 * 1.87981 * 20 15 14 22 22 C 1.47579 * 91.00789 * 335.35638 * 11 10 9 23 23 H 0.96999 * 119.99516 * 0.02562 * 1 2 3 24 24 H 1.09002 * 112.94317 * 309.66485 * 9 7 2 25 25 H 1.09006 * 113.76402 * 252.36573 * 10 9 7 26 26 H 1.08997 * 113.76968 * 23.75198 * 10 9 7 27 27 H 1.09003 * 109.47319 * 299.99914 * 14 12 11 28 28 H 1.09001 * 109.47328 * 59.99726 * 14 12 11 29 29 H 1.08997 * 109.39409 * 281.78033 * 16 15 14 30 30 H 1.08995 * 109.39324 * 41.50353 * 16 15 14 31 31 H 1.08996 * 109.79741 * 289.72776 * 17 16 15 32 32 H 1.09005 * 109.54111 * 169.15539 * 17 16 15 33 33 H 1.09002 * 109.41191 * 289.48975 * 19 18 17 34 34 H 1.09003 * 109.41696 * 169.70639 * 19 18 17 35 35 H 1.09003 * 113.77049 * 270.34039 * 22 11 10 36 36 H 1.08993 * 113.77081 * 138.93800 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.7561 -2.9292 -1.3924 11 7 1.1904 -4.2911 -1.0121 12 6 0.8406 -5.5354 -1.3942 13 8 1.3838 -6.4981 -0.8953 14 6 -0.2246 -5.7303 -2.4422 15 7 -0.4205 -7.1627 -2.6789 16 6 0.3769 -7.8191 -3.7122 17 6 0.3669 -9.3350 -3.4915 18 8 -0.9894 -9.7603 -3.3136 19 6 -1.5641 -9.2958 -2.0897 20 6 -1.3271 -7.8184 -1.9438 21 8 -1.9800 -7.1987 -1.1311 22 6 2.1608 -3.7402 -0.0462 23 1 -0.4849 0.8401 -0.0004 24 1 0.4833 -2.5466 0.7730 25 1 -0.3213 -2.8307 -1.5255 26 1 1.3285 -2.4988 -2.2141 27 1 -1.1593 -5.2883 -2.0968 28 1 0.0848 -5.2474 -3.3691 29 1 -0.0411 -7.5897 -4.6923 30 1 1.4030 -7.4548 -3.6634 31 1 0.9474 -9.5825 -2.6028 32 1 0.7951 -9.8329 -4.3614 33 1 -1.1055 -9.8208 -1.2518 34 1 -2.6364 -9.4919 -2.0955 35 1 3.1449 -3.5476 -0.4734 36 1 2.2040 -4.2889 0.8945 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598023066.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:42 Heat of formation + Delta-G solvation = -91.399381 kcal Electronic energy + Delta-G solvation = -20614.880853 eV Core-core repulsion = 17292.954794 eV Total energy + Delta-G solvation = -3321.926060 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.96258 -40.79201 -38.85002 -38.62270 -36.36802 -34.64201 -31.86369 -31.09375 -29.83225 -27.59713 -26.88951 -26.19506 -24.85701 -22.21927 -20.35752 -19.84170 -18.85526 -18.74930 -18.20243 -18.08062 -17.09004 -16.76373 -16.45864 -16.39482 -16.15203 -15.47490 -15.21042 -15.10278 -14.49556 -14.24780 -14.05253 -13.84973 -13.38647 -13.26222 -12.97888 -12.81918 -12.80431 -12.58365 -12.33793 -12.24115 -11.67563 -11.45394 -11.17664 -10.94333 -10.60501 -10.54992 -9.90182 -9.59260 -8.16662 -6.28629 1.21835 1.46230 1.49780 1.53312 1.59929 1.61554 2.08670 2.46081 2.72928 3.14554 3.24007 3.44004 3.74284 3.96212 4.09354 4.17042 4.24980 4.28234 4.36056 4.41845 4.45229 4.51074 4.62975 4.68067 4.76198 4.80965 4.90435 5.01399 5.10743 5.58621 5.70873 5.80588 6.19132 6.20589 6.79317 6.81536 6.84127 7.07832 7.41896 8.93356 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.045738 B = 0.003855 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.035328 B = 7261.228356 C = 7429.208750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.021 3.979 3 Si 0.960 3.040 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.286 1.286 7 C -0.529 4.529 8 H 0.068 0.932 9 C 0.018 3.982 10 C 0.120 3.880 11 N -0.641 5.641 12 C 0.508 3.492 13 O -0.591 6.591 14 C 0.101 3.899 15 N -0.589 5.589 16 C 0.075 3.925 17 C 0.044 3.956 18 O -0.373 6.373 19 C 0.062 3.938 20 C 0.478 3.522 21 O -0.589 6.589 22 C 0.111 3.889 23 H 0.264 0.736 24 H 0.029 0.971 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.143 0.857 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.153 0.847 33 H 0.102 0.898 34 H 0.148 0.852 35 H 0.090 0.910 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.707 -14.803 -11.362 18.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.179 4.179 3 Si 0.785 3.215 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.212 1.212 7 C -0.567 4.567 8 H 0.086 0.914 9 C -0.001 4.001 10 C -0.002 4.002 11 N -0.375 5.375 12 C 0.297 3.703 13 O -0.474 6.474 14 C -0.026 4.026 15 N -0.320 5.320 16 C -0.046 4.046 17 C -0.033 4.033 18 O -0.291 6.291 19 C -0.017 4.017 20 C 0.268 3.732 21 O -0.470 6.470 22 C -0.011 4.011 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.082 0.918 26 H 0.110 0.890 27 H 0.119 0.881 28 H 0.160 0.840 29 H 0.122 0.878 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.171 0.829 33 H 0.120 0.880 34 H 0.166 0.834 35 H 0.108 0.892 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.349 -15.219 -10.921 18.735 hybrid contribution 0.385 1.362 0.673 1.567 sum 0.734 -13.857 -10.249 17.251 Atomic orbital electron populations 1.70075 1.07476 1.27811 1.50388 1.25766 0.95534 1.02572 0.94063 0.85478 0.79214 0.79303 0.77478 1.18741 1.20416 1.21217 1.21289 0.93382 0.90453 1.51604 0.91414 1.20425 0.94151 0.92174 0.93327 1.23578 0.99525 0.76216 1.00857 1.50540 1.40168 1.05136 1.41659 1.21320 0.84147 0.81322 0.83494 1.90586 1.57911 1.40329 1.58536 1.21277 0.98339 0.83661 0.99300 1.47304 1.38594 1.08785 1.37353 1.22547 0.96775 0.94380 0.90911 1.23254 0.82997 0.92149 1.04862 1.88166 1.27991 1.74339 1.38611 1.22816 1.03249 0.86181 0.89484 1.21838 0.78920 0.92722 0.79759 1.90737 1.49725 1.69116 1.37430 1.23374 0.94202 0.92474 0.91095 0.92656 0.95324 0.91790 0.89036 0.88086 0.83959 0.87772 0.89175 0.92211 0.82905 0.88018 0.83414 0.89198 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.28 13.29 21.45 0.28 -50.00 16 2 C 0.02 1.07 5.46 84.65 0.46 1.53 16 3 Si 0.96 40.48 29.54 68.60 2.03 42.50 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.53 -26.66 8.77 25.60 0.22 -26.44 16 8 H 0.07 3.29 7.81 -2.91 -0.02 3.27 16 9 C 0.02 0.88 3.60 -10.88 -0.04 0.84 16 10 C 0.12 4.93 8.19 86.42 0.71 5.64 16 11 N -0.64 -25.98 3.62 -835.83 -3.02 -29.00 16 12 C 0.51 19.80 8.12 87.65 0.71 20.51 16 13 O -0.59 -26.30 17.16 -3.04 -0.05 -26.35 16 14 C 0.10 3.06 5.55 85.63 0.48 3.54 16 15 N -0.59 -16.12 2.32 -828.65 -1.92 -18.04 16 16 C 0.08 1.33 6.63 86.52 0.57 1.90 16 17 C 0.04 0.64 6.91 72.04 0.50 1.14 16 18 O -0.37 -6.86 10.85 -148.98 -1.62 -8.47 16 19 C 0.06 1.29 6.98 71.12 0.50 1.79 16 20 C 0.48 14.61 7.58 87.68 0.66 15.27 16 21 O -0.59 -23.54 16.36 -3.03 -0.05 -23.59 16 22 C 0.11 4.64 8.39 86.49 0.73 5.37 16 23 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 24 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.06 2.64 8.14 -2.38 -0.02 2.63 16 26 H 0.09 3.51 8.09 -2.39 -0.02 3.49 16 27 H 0.10 3.42 7.23 -2.39 -0.02 3.40 16 28 H 0.14 3.19 8.04 -2.39 -0.02 3.17 16 29 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.56 8.13 -2.39 -0.02 1.54 16 31 H 0.06 1.00 8.09 -2.39 -0.02 0.98 16 32 H 0.15 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.15 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.09 3.48 8.09 -2.39 -0.02 3.46 16 36 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -70.68 311.42 2.23 -68.45 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 1.08 Total: 13.40 kcal Atomic # 6 Polarization: 25.59 SS G_CDS: 5.50 Total: 31.10 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -4.66 Total: -97.04 kcal Atomic # 8 Polarization: -56.69 SS G_CDS: -1.72 Total: -58.41 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.50 kcal Total: -70.68 2.23 -68.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598023066.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.945 kcal (2) G-P(sol) polarization free energy of solvation -70.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds