Wall clock time and date at job start Mon Mar 30 2020 05:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 116.99914 * 2 1 4 4 O 1.20825 * 119.99820 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99975 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47288 * 180.02562 * 5 3 2 7 7 H 1.09002 * 110.54109 * 305.70178 * 6 5 3 8 8 C 1.51437 * 110.60718 * 182.84957 * 6 5 3 9 9 C 1.50699 * 126.41840 * 61.36612 * 8 6 5 10 10 N 1.27568 * 107.16819 * 241.32877 * 8 6 5 11 11 N 1.39151 * 113.16277 * 0.02562 * 10 8 6 12 12 C 1.46501 * 124.43673 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.47322 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47307 * 300.02043 * 12 11 10 15 15 C 1.50691 * 109.47641 * 60.02480 * 12 11 10 16 16 H 1.08008 * 120.00135 * 0.02562 * 15 12 11 17 17 C 1.37876 * 120.00347 * 179.97438 * 15 12 11 18 18 N 1.31519 * 119.99960 * 179.97438 * 17 15 12 19 19 Si 1.86794 * 119.99947 * 359.97438 * 17 15 12 20 20 H 1.48506 * 109.47194 * 90.00201 * 19 17 15 21 21 H 1.48501 * 109.47058 * 209.99811 * 19 17 15 22 22 H 1.48498 * 109.47094 * 330.00081 * 19 17 15 23 23 C 1.35305 * 111.16276 * 0.08925 * 11 10 8 24 24 O 1.21306 * 127.67875 * 179.91262 * 23 11 10 25 25 H 1.08997 * 109.47292 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47103 * 299.99850 * 1 2 3 27 27 H 1.08997 * 109.47393 * 59.99621 * 1 2 3 28 28 H 1.09005 * 109.46880 * 60.00083 * 5 3 2 29 29 H 1.09006 * 109.47175 * 300.00458 * 5 3 2 30 30 H 1.09001 * 109.47357 * 89.99958 * 9 8 6 31 31 H 1.09002 * 109.47446 * 209.99434 * 9 8 6 32 32 H 1.08995 * 109.46856 * 330.00128 * 9 8 6 33 33 H 1.09005 * 109.46976 * 60.00080 * 14 12 11 34 34 H 1.08995 * 109.47372 * 180.02562 * 14 12 11 35 35 H 1.08997 * 109.47085 * 300.00619 * 14 12 11 36 36 H 0.97001 * 120.00157 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 1 3.5370 3.2783 -0.8282 8 6 5.5088 2.8518 -0.0708 9 6 6.3906 2.3528 -1.1864 10 7 5.8935 3.4465 0.9902 11 7 4.8438 3.7884 1.8372 12 6 5.0051 4.4771 3.1201 13 1 4.0275 4.6224 3.5800 14 6 5.8834 3.6326 4.0455 15 6 5.6573 5.8164 2.8929 16 1 5.9246 6.1242 1.8927 17 6 5.9119 6.6495 3.9616 18 7 6.4816 7.8182 3.7632 19 14 5.4477 6.1183 5.6912 20 1 6.5856 5.3897 6.3074 21 1 5.1268 7.3165 6.5077 22 1 4.2618 5.2264 5.6336 23 6 3.6544 3.3995 1.3226 24 8 2.5528 3.5449 1.8093 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 3.9556 0.7810 -0.8909 29 1 3.9564 0.7805 0.8892 30 1 6.5149 3.1393 -1.9308 31 1 7.3651 2.0768 -0.7835 32 1 5.9297 1.4816 -1.6518 33 1 6.8610 3.4873 3.5857 34 1 6.0030 4.1448 5.0001 35 1 5.4116 2.6639 4.2099 36 1 6.6604 8.4045 4.5150 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601935625.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:25 Heat of formation + Delta-G solvation = -56.107956 kcal Electronic energy + Delta-G solvation = -21003.361764 eV Core-core repulsion = 17682.966055 eV Total energy + Delta-G solvation = -3320.395709 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.15656 -40.06998 -36.91463 -36.51227 -35.03958 -32.71335 -31.69875 -30.54961 -28.17681 -27.53548 -25.68739 -25.14222 -21.87410 -21.05509 -20.19584 -19.02714 -17.51942 -16.88763 -16.62867 -16.45825 -16.08915 -15.51414 -14.88541 -14.44354 -14.25225 -13.58961 -13.50058 -13.23113 -13.00502 -12.92645 -12.57662 -12.36936 -12.30821 -12.17807 -11.98423 -11.87252 -11.68533 -10.98538 -10.83103 -10.74928 -10.45104 -10.35487 -10.16456 -9.70082 -9.36110 -9.04372 -8.66335 -7.87690 -6.16384 -4.17485 1.93653 2.25700 2.65759 3.09748 3.20641 3.21520 3.33153 3.33665 4.11476 4.23430 4.30694 4.55738 4.87503 4.94749 5.00881 5.09388 5.14854 5.19511 5.35360 5.43218 5.57310 5.58386 5.70724 5.99297 6.15558 6.24016 6.33047 6.35812 6.45541 6.67969 7.12827 7.20428 7.47709 7.76888 8.24191 8.44403 8.54738 8.88504 9.41500 10.96537 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.024195 B = 0.005716 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.977730 B = 4896.967816 C = 5563.191027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.365 6.365 3 C 0.449 3.551 4 O -0.472 6.472 5 C -0.081 4.081 6 C -0.131 4.131 7 H 0.134 0.866 8 C 0.047 3.953 9 C -0.069 4.069 10 N -0.189 5.189 11 N -0.436 5.436 12 C 0.257 3.743 13 H 0.063 0.937 14 C -0.159 4.159 15 C -0.523 4.523 16 H 0.082 0.918 17 C 0.077 3.923 18 N -0.891 5.891 19 Si 0.881 3.119 20 H -0.274 1.274 21 H -0.291 1.291 22 H -0.265 1.265 23 C 0.493 3.507 24 O -0.485 6.485 25 H 0.098 0.902 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.121 0.879 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.031 0.969 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.284 -17.520 -10.018 20.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.282 6.282 3 C 0.289 3.711 4 O -0.356 6.356 5 C -0.120 4.120 6 C -0.155 4.155 7 H 0.152 0.848 8 C -0.147 4.147 9 C -0.127 4.127 10 N 0.004 4.996 11 N -0.256 5.256 12 C 0.157 3.843 13 H 0.080 0.920 14 C -0.217 4.217 15 C -0.562 4.562 16 H 0.100 0.900 17 C -0.127 4.127 18 N -0.528 5.528 19 Si 0.711 3.289 20 H -0.201 1.201 21 H -0.219 1.219 22 H -0.191 1.191 23 C 0.278 3.722 24 O -0.357 6.357 25 H 0.117 0.883 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.139 0.861 29 H 0.126 0.874 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.343 -16.474 -8.909 19.226 hybrid contribution -1.063 -0.164 0.689 1.278 sum -5.406 -16.639 -8.220 19.330 Atomic orbital electron populations 1.23223 0.76430 1.03324 1.02708 1.86461 1.23385 1.33590 1.84814 1.23564 0.91975 0.81660 0.73860 1.90797 1.66630 1.35751 1.42393 1.20944 0.88433 0.95810 1.06765 1.21572 0.96254 0.96737 1.00925 0.84837 1.25052 0.92221 1.00811 0.96613 1.20218 0.97944 1.01111 0.93461 1.74576 1.17016 1.07208 1.00774 1.50209 1.01865 1.53700 1.19819 1.19406 0.97536 0.91220 0.76109 0.91955 1.22433 1.01629 0.98040 0.99613 1.21062 1.40382 0.98139 0.96577 0.89978 1.24845 0.94337 0.94700 0.98775 1.69864 1.41905 1.09291 1.31763 0.86955 0.79425 0.77652 0.84877 1.20071 1.21857 1.19054 1.21156 0.85123 0.79527 0.86346 1.90764 1.22594 1.55845 1.66463 0.88320 0.91814 0.91991 0.86116 0.87370 0.89899 0.89892 0.90330 0.91447 0.92822 0.94987 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.39 10.57 -39.27 -0.41 -4.80 16 3 C 0.45 6.31 7.66 36.01 0.28 6.59 16 4 O -0.47 -8.51 13.64 -25.93 -0.35 -8.86 16 5 C -0.08 -0.92 5.33 -27.89 -0.15 -1.07 16 6 C -0.13 -1.97 2.62 -92.08 -0.24 -2.22 16 7 H 0.13 1.93 7.96 -51.93 -0.41 1.51 16 8 C 0.05 0.67 6.93 -78.73 -0.55 0.12 16 9 C -0.07 -0.60 10.49 36.01 0.38 -0.22 16 10 N -0.19 -3.69 11.77 35.53 0.42 -3.27 16 11 N -0.44 -9.84 3.24 -54.44 -0.18 -10.02 16 12 C 0.26 6.50 2.57 -69.09 -0.18 6.32 16 13 H 0.06 1.68 6.75 -51.93 -0.35 1.33 16 14 C -0.16 -3.58 8.89 37.16 0.33 -3.25 16 15 C -0.52 -15.13 9.30 -34.45 -0.32 -15.45 16 16 H 0.08 2.61 8.06 -52.48 -0.42 2.19 16 17 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 18 N -0.89 -27.30 13.96 55.43 0.77 -26.52 16 19 Si 0.88 21.90 24.37 -169.99 -4.14 17.76 16 20 H -0.27 -6.50 6.87 56.52 0.39 -6.11 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.27 -6.43 6.53 56.52 0.37 -6.07 16 23 C 0.49 10.51 7.52 -10.27 -0.08 10.43 16 24 O -0.49 -11.89 15.48 -16.00 -0.25 -12.14 16 25 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 27 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 28 H 0.12 0.83 7.50 -51.93 -0.39 0.44 16 29 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.42 7.49 -51.93 -0.39 0.03 16 33 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 34 H 0.05 1.23 3.28 -51.93 -0.17 1.06 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 305.31 15.07 4.60 4.60 Total: -1.00 -36.63 305.31 -3.80 -40.43 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -4.70 Total: -1.99 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 0.44 Total: 4.80 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 1.02 Total: -39.81 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -1.02 Total: -25.80 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.14 Total: 17.76 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -36.63 -3.80 -40.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601935625.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.675 kcal (2) G-P(sol) polarization free energy of solvation -36.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds