Wall clock time and date at job start Mon Mar 30 2020 05:20:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45198 * 1
3 3 C 1.34234 * 116.99914 * 2 1
4 4 O 1.20825 * 119.99820 * 0.02562 * 3 2 1
5 5 C 1.50699 * 119.99975 * 180.02562 * 3 2 1
6 6 C 1.52996 * 109.47288 * 180.02562 * 5 3 2
7 7 H 1.09002 * 110.54109 * 305.70178 * 6 5 3
8 8 C 1.51437 * 110.60718 * 182.84957 * 6 5 3
9 9 C 1.50699 * 126.41840 * 61.36612 * 8 6 5
10 10 N 1.27568 * 107.16819 * 241.32877 * 8 6 5
11 11 N 1.39151 * 113.16277 * 0.02562 * 10 8 6
12 12 C 1.46501 * 124.43673 * 179.97438 * 11 10 8
13 13 H 1.09004 * 109.47322 * 180.02562 * 12 11 10
14 14 C 1.52999 * 109.47307 * 300.02043 * 12 11 10
15 15 C 1.50691 * 109.47641 * 60.02480 * 12 11 10
16 16 H 1.08008 * 120.00135 * 0.02562 * 15 12 11
17 17 C 1.37876 * 120.00347 * 179.97438 * 15 12 11
18 18 N 1.31519 * 119.99960 * 179.97438 * 17 15 12
19 19 Si 1.86794 * 119.99947 * 359.97438 * 17 15 12
20 20 H 1.48506 * 109.47194 * 90.00201 * 19 17 15
21 21 H 1.48501 * 109.47058 * 209.99811 * 19 17 15
22 22 H 1.48498 * 109.47094 * 330.00081 * 19 17 15
23 23 C 1.35305 * 111.16276 * 0.08925 * 11 10 8
24 24 O 1.21306 * 127.67875 * 179.91262 * 23 11 10
25 25 H 1.08997 * 109.47292 * 179.97438 * 1 2 3
26 26 H 1.09007 * 109.47103 * 299.99850 * 1 2 3
27 27 H 1.08997 * 109.47393 * 59.99621 * 1 2 3
28 28 H 1.09005 * 109.46880 * 60.00083 * 5 3 2
29 29 H 1.09006 * 109.47175 * 300.00458 * 5 3 2
30 30 H 1.09001 * 109.47357 * 89.99958 * 9 8 6
31 31 H 1.09002 * 109.47446 * 209.99434 * 9 8 6
32 32 H 1.08995 * 109.46856 * 330.00128 * 9 8 6
33 33 H 1.09005 * 109.46976 * 60.00080 * 14 12 11
34 34 H 1.08995 * 109.47372 * 180.02562 * 14 12 11
35 35 H 1.08997 * 109.47085 * 300.00619 * 14 12 11
36 36 H 0.97001 * 120.00157 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2093 0.0005
5 6 3.5663 1.2749 -0.0006
6 6 4.0001 2.7421 0.0002
7 1 3.5370 3.2783 -0.8282
8 6 5.5088 2.8518 -0.0708
9 6 6.3906 2.3528 -1.1864
10 7 5.8935 3.4465 0.9902
11 7 4.8438 3.7884 1.8372
12 6 5.0051 4.4771 3.1201
13 1 4.0275 4.6224 3.5800
14 6 5.8834 3.6326 4.0455
15 6 5.6573 5.8164 2.8929
16 1 5.9246 6.1242 1.8927
17 6 5.9119 6.6495 3.9616
18 7 6.4816 7.8182 3.7632
19 14 5.4477 6.1183 5.6912
20 1 6.5856 5.3897 6.3074
21 1 5.1268 7.3165 6.5077
22 1 4.2618 5.2264 5.6336
23 6 3.6544 3.3995 1.3226
24 8 2.5528 3.5449 1.8093
25 1 -0.3634 -1.0276 -0.0005
26 1 -0.3634 0.5138 0.8900
27 1 -0.3634 0.5139 -0.8899
28 1 3.9556 0.7810 -0.8909
29 1 3.9564 0.7805 0.8892
30 1 6.5149 3.1393 -1.9308
31 1 7.3651 2.0768 -0.7835
32 1 5.9297 1.4816 -1.6518
33 1 6.8610 3.4873 3.5857
34 1 6.0030 4.1448 5.0001
35 1 5.4116 2.6639 4.2099
36 1 6.6604 8.4045 4.5150
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601935625.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:20:25
Heat of formation + Delta-G solvation = -56.107956 kcal
Electronic energy + Delta-G solvation = -21003.361764 eV
Core-core repulsion = 17682.966055 eV
Total energy + Delta-G solvation = -3320.395709 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 268.126 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.15656 -40.06998 -36.91463 -36.51227 -35.03958 -32.71335 -31.69875 -30.54961
-28.17681 -27.53548 -25.68739 -25.14222 -21.87410 -21.05509 -20.19584 -19.02714
-17.51942 -16.88763 -16.62867 -16.45825 -16.08915 -15.51414 -14.88541 -14.44354
-14.25225 -13.58961 -13.50058 -13.23113 -13.00502 -12.92645 -12.57662 -12.36936
-12.30821 -12.17807 -11.98423 -11.87252 -11.68533 -10.98538 -10.83103 -10.74928
-10.45104 -10.35487 -10.16456 -9.70082 -9.36110 -9.04372 -8.66335 -7.87690
-6.16384 -4.17485 1.93653 2.25700 2.65759 3.09748 3.20641 3.21520
3.33153 3.33665 4.11476 4.23430 4.30694 4.55738 4.87503 4.94749
5.00881 5.09388 5.14854 5.19511 5.35360 5.43218 5.57310 5.58386
5.70724 5.99297 6.15558 6.24016 6.33047 6.35812 6.45541 6.67969
7.12827 7.20428 7.47709 7.76888 8.24191 8.44403 8.54738 8.88504
9.41500 10.96537
Molecular weight = 268.13amu
Principal moments of inertia in cm(-1)
A = 0.024195 B = 0.005716 C = 0.005032
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1156.977730 B = 4896.967816 C = 5563.191027
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.365 6.365
3 C 0.449 3.551
4 O -0.472 6.472
5 C -0.081 4.081
6 C -0.131 4.131
7 H 0.134 0.866
8 C 0.047 3.953
9 C -0.069 4.069
10 N -0.189 5.189
11 N -0.436 5.436
12 C 0.257 3.743
13 H 0.063 0.937
14 C -0.159 4.159
15 C -0.523 4.523
16 H 0.082 0.918
17 C 0.077 3.923
18 N -0.891 5.891
19 Si 0.881 3.119
20 H -0.274 1.274
21 H -0.291 1.291
22 H -0.265 1.265
23 C 0.493 3.507
24 O -0.485 6.485
25 H 0.098 0.902
26 H 0.063 0.937
27 H 0.061 0.939
28 H 0.121 0.879
29 H 0.108 0.892
30 H 0.082 0.918
31 H 0.082 0.918
32 H 0.078 0.922
33 H 0.066 0.934
34 H 0.053 0.947
35 H 0.031 0.969
36 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.284 -17.520 -10.018 20.632
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 O -0.282 6.282
3 C 0.289 3.711
4 O -0.356 6.356
5 C -0.120 4.120
6 C -0.155 4.155
7 H 0.152 0.848
8 C -0.147 4.147
9 C -0.127 4.127
10 N 0.004 4.996
11 N -0.256 5.256
12 C 0.157 3.843
13 H 0.080 0.920
14 C -0.217 4.217
15 C -0.562 4.562
16 H 0.100 0.900
17 C -0.127 4.127
18 N -0.528 5.528
19 Si 0.711 3.289
20 H -0.201 1.201
21 H -0.219 1.219
22 H -0.191 1.191
23 C 0.278 3.722
24 O -0.357 6.357
25 H 0.117 0.883
26 H 0.082 0.918
27 H 0.080 0.920
28 H 0.139 0.861
29 H 0.126 0.874
30 H 0.101 0.899
31 H 0.101 0.899
32 H 0.097 0.903
33 H 0.086 0.914
34 H 0.072 0.928
35 H 0.050 0.950
36 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -4.343 -16.474 -8.909 19.226
hybrid contribution -1.063 -0.164 0.689 1.278
sum -5.406 -16.639 -8.220 19.330
Atomic orbital electron populations
1.23223 0.76430 1.03324 1.02708 1.86461 1.23385 1.33590 1.84814
1.23564 0.91975 0.81660 0.73860 1.90797 1.66630 1.35751 1.42393
1.20944 0.88433 0.95810 1.06765 1.21572 0.96254 0.96737 1.00925
0.84837 1.25052 0.92221 1.00811 0.96613 1.20218 0.97944 1.01111
0.93461 1.74576 1.17016 1.07208 1.00774 1.50209 1.01865 1.53700
1.19819 1.19406 0.97536 0.91220 0.76109 0.91955 1.22433 1.01629
0.98040 0.99613 1.21062 1.40382 0.98139 0.96577 0.89978 1.24845
0.94337 0.94700 0.98775 1.69864 1.41905 1.09291 1.31763 0.86955
0.79425 0.77652 0.84877 1.20071 1.21857 1.19054 1.21156 0.85123
0.79527 0.86346 1.90764 1.22594 1.55845 1.66463 0.88320 0.91814
0.91991 0.86116 0.87370 0.89899 0.89892 0.90330 0.91447 0.92822
0.94987 0.92304
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.35 10.56 101.05 1.07 1.42 16
2 O -0.36 -4.39 10.57 -39.27 -0.41 -4.80 16
3 C 0.45 6.31 7.66 36.01 0.28 6.59 16
4 O -0.47 -8.51 13.64 -25.93 -0.35 -8.86 16
5 C -0.08 -0.92 5.33 -27.89 -0.15 -1.07 16
6 C -0.13 -1.97 2.62 -92.08 -0.24 -2.22 16
7 H 0.13 1.93 7.96 -51.93 -0.41 1.51 16
8 C 0.05 0.67 6.93 -78.73 -0.55 0.12 16
9 C -0.07 -0.60 10.49 36.01 0.38 -0.22 16
10 N -0.19 -3.69 11.77 35.53 0.42 -3.27 16
11 N -0.44 -9.84 3.24 -54.44 -0.18 -10.02 16
12 C 0.26 6.50 2.57 -69.09 -0.18 6.32 16
13 H 0.06 1.68 6.75 -51.93 -0.35 1.33 16
14 C -0.16 -3.58 8.89 37.16 0.33 -3.25 16
15 C -0.52 -15.13 9.30 -34.45 -0.32 -15.45 16
16 H 0.08 2.61 8.06 -52.48 -0.42 2.19 16
17 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16
18 N -0.89 -27.30 13.96 55.43 0.77 -26.52 16
19 Si 0.88 21.90 24.37 -169.99 -4.14 17.76 16
20 H -0.27 -6.50 6.87 56.52 0.39 -6.11 16
21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
22 H -0.27 -6.43 6.53 56.52 0.37 -6.07 16
23 C 0.49 10.51 7.52 -10.27 -0.08 10.43 16
24 O -0.49 -11.89 15.48 -16.00 -0.25 -12.14 16
25 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16
26 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16
27 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16
28 H 0.12 0.83 7.50 -51.93 -0.39 0.44 16
29 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16
30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16
32 H 0.08 0.42 7.49 -51.93 -0.39 0.03 16
33 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16
34 H 0.05 1.23 3.28 -51.93 -0.17 1.06 16
35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16
36 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16
LS Contribution 305.31 15.07 4.60 4.60
Total: -1.00 -36.63 305.31 -3.80 -40.43
By element:
Atomic # 1 Polarization: 2.71 SS G_CDS: -4.70 Total: -1.99 kcal
Atomic # 6 Polarization: 4.36 SS G_CDS: 0.44 Total: 4.80 kcal
Atomic # 7 Polarization: -40.82 SS G_CDS: 1.02 Total: -39.81 kcal
Atomic # 8 Polarization: -24.78 SS G_CDS: -1.02 Total: -25.80 kcal
Atomic # 14 Polarization: 21.90 SS G_CDS: -4.14 Total: 17.76 kcal
Total LS contribution 4.60 Total: 4.60 kcal
Total: -36.63 -3.80 -40.43 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601935625.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.675 kcal
(2) G-P(sol) polarization free energy of solvation -36.635 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.309 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.799 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.108 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds