Wall clock time and date at job start Mon Mar 30 2020 05:20:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45198 * 1
3 3 C 1.34234 * 116.99914 * 2 1
4 4 O 1.20825 * 119.99820 * 0.02562 * 3 2 1
5 5 C 1.50699 * 119.99975 * 180.02562 * 3 2 1
6 6 C 1.52996 * 109.47288 * 180.02562 * 5 3 2
7 7 H 1.09002 * 110.54109 * 305.70178 * 6 5 3
8 8 C 1.51437 * 110.60718 * 182.84957 * 6 5 3
9 9 C 1.50699 * 126.41840 * 61.36612 * 8 6 5
10 10 N 1.27568 * 107.16819 * 241.32877 * 8 6 5
11 11 N 1.39151 * 113.16277 * 0.02562 * 10 8 6
12 12 C 1.46501 * 124.43673 * 179.97438 * 11 10 8
13 13 H 1.09004 * 109.47322 * 180.02562 * 12 11 10
14 14 C 1.52999 * 109.47307 * 300.02043 * 12 11 10
15 15 C 1.50691 * 109.47641 * 60.02480 * 12 11 10
16 16 H 1.08008 * 120.00135 * 0.02562 * 15 12 11
17 17 C 1.37876 * 120.00347 * 179.97438 * 15 12 11
18 18 N 1.31519 * 119.99960 * 179.97438 * 17 15 12
19 19 Si 1.86794 * 119.99947 * 359.97438 * 17 15 12
20 20 H 1.48506 * 109.47194 * 90.00201 * 19 17 15
21 21 H 1.48501 * 109.47058 * 209.99811 * 19 17 15
22 22 H 1.48498 * 109.47094 * 330.00081 * 19 17 15
23 23 C 1.35305 * 111.16276 * 0.08925 * 11 10 8
24 24 O 1.21306 * 127.67875 * 179.91262 * 23 11 10
25 25 H 1.08997 * 109.47292 * 179.97438 * 1 2 3
26 26 H 1.09007 * 109.47103 * 299.99850 * 1 2 3
27 27 H 1.08997 * 109.47393 * 59.99621 * 1 2 3
28 28 H 1.09005 * 109.46880 * 60.00083 * 5 3 2
29 29 H 1.09006 * 109.47175 * 300.00458 * 5 3 2
30 30 H 1.09001 * 109.47357 * 89.99958 * 9 8 6
31 31 H 1.09002 * 109.47446 * 209.99434 * 9 8 6
32 32 H 1.08995 * 109.46856 * 330.00128 * 9 8 6
33 33 H 1.09005 * 109.46976 * 60.00080 * 14 12 11
34 34 H 1.08995 * 109.47372 * 180.02562 * 14 12 11
35 35 H 1.08997 * 109.47085 * 300.00619 * 14 12 11
36 36 H 0.97001 * 120.00157 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2093 0.0005
5 6 3.5663 1.2749 -0.0006
6 6 4.0001 2.7421 0.0002
7 1 3.5370 3.2783 -0.8282
8 6 5.5088 2.8518 -0.0708
9 6 6.3906 2.3528 -1.1864
10 7 5.8935 3.4465 0.9902
11 7 4.8438 3.7884 1.8372
12 6 5.0051 4.4771 3.1201
13 1 4.0275 4.6224 3.5800
14 6 5.8834 3.6326 4.0455
15 6 5.6573 5.8164 2.8929
16 1 5.9246 6.1242 1.8927
17 6 5.9119 6.6495 3.9616
18 7 6.4816 7.8182 3.7632
19 14 5.4477 6.1183 5.6912
20 1 6.5856 5.3897 6.3074
21 1 5.1268 7.3165 6.5077
22 1 4.2618 5.2264 5.6336
23 6 3.6544 3.3995 1.3226
24 8 2.5528 3.5449 1.8093
25 1 -0.3634 -1.0276 -0.0005
26 1 -0.3634 0.5138 0.8900
27 1 -0.3634 0.5139 -0.8899
28 1 3.9556 0.7810 -0.8909
29 1 3.9564 0.7805 0.8892
30 1 6.5149 3.1393 -1.9308
31 1 7.3651 2.0768 -0.7835
32 1 5.9297 1.4816 -1.6518
33 1 6.8610 3.4873 3.5857
34 1 6.0030 4.1448 5.0001
35 1 5.4116 2.6639 4.2099
36 1 6.6604 8.4045 4.5150
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601935625.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:20:25
Heat of formation + Delta-G solvation = -83.506019 kcal
Electronic energy + Delta-G solvation = -21004.549833 eV
Core-core repulsion = 17682.966055 eV
Total energy + Delta-G solvation = -3321.583778 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 268.126 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-42.51095 -41.20678 -38.49218 -37.60875 -36.78902 -34.46392 -33.15862 -32.02598
-29.17714 -28.69882 -27.28442 -26.77231 -23.49219 -22.38463 -21.43760 -20.48804
-18.88206 -18.53495 -17.96862 -17.85778 -17.47690 -16.88176 -16.44428 -15.87393
-15.77902 -15.02811 -14.64865 -14.51609 -14.43341 -14.25724 -14.08484 -13.77903
-13.65067 -13.41352 -13.11486 -13.05877 -12.85812 -12.83769 -12.33219 -12.20375
-11.79526 -11.77307 -11.58029 -11.50720 -11.41497 -10.88176 -10.54514 -9.50214
-8.41574 -6.48219 0.66138 1.21881 1.22089 1.29925 1.38580 1.51651
1.73161 1.76762 2.20907 2.81473 2.94075 3.08225 3.44940 3.87291
3.95523 4.25439 4.31202 4.31691 4.33328 4.41381 4.43662 4.52951
4.62130 4.70814 4.71602 4.88960 4.99664 5.09991 5.26574 5.38099
5.40210 5.41950 5.66600 6.13979 6.51953 6.74813 6.82695 7.00305
7.17298 8.75333
Molecular weight = 268.13amu
Principal moments of inertia in cm(-1)
A = 0.024195 B = 0.005716 C = 0.005032
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1156.977730 B = 4896.967816 C = 5563.191027
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.360 6.360
3 C 0.448 3.552
4 O -0.521 6.521
5 C -0.073 4.073
6 C -0.122 4.122
7 H 0.144 0.856
8 C 0.099 3.901
9 C -0.072 4.072
10 N -0.252 5.252
11 N -0.456 5.456
12 C 0.258 3.742
13 H 0.038 0.962
14 C -0.147 4.147
15 C -0.528 4.528
16 H 0.035 0.965
17 C 0.022 3.978
18 N -0.937 5.937
19 Si 0.945 3.055
20 H -0.248 1.248
21 H -0.288 1.288
22 H -0.259 1.259
23 C 0.472 3.528
24 O -0.536 6.536
25 H 0.137 0.863
26 H 0.045 0.955
27 H 0.064 0.936
28 H 0.183 0.817
29 H 0.117 0.883
30 H 0.098 0.902
31 H 0.091 0.909
32 H 0.129 0.871
33 H 0.067 0.933
34 H 0.051 0.949
35 H 0.057 0.943
36 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.664 -20.983 -11.198 24.065
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 O -0.277 6.277
3 C 0.291 3.709
4 O -0.409 6.409
5 C -0.111 4.111
6 C -0.146 4.146
7 H 0.162 0.838
8 C -0.094 4.094
9 C -0.130 4.130
10 N -0.058 5.058
11 N -0.274 5.274
12 C 0.156 3.844
13 H 0.055 0.945
14 C -0.205 4.205
15 C -0.566 4.566
16 H 0.053 0.947
17 C -0.177 4.177
18 N -0.576 5.576
19 Si 0.770 3.230
20 H -0.173 1.173
21 H -0.215 1.215
22 H -0.184 1.184
23 C 0.259 3.741
24 O -0.411 6.411
25 H 0.155 0.845
26 H 0.064 0.936
27 H 0.083 0.917
28 H 0.200 0.800
29 H 0.135 0.865
30 H 0.116 0.884
31 H 0.110 0.890
32 H 0.147 0.853
33 H 0.086 0.914
34 H 0.069 0.931
35 H 0.076 0.924
36 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -3.685 -19.986 -10.118 22.702
hybrid contribution -1.281 0.874 0.810 1.750
sum -4.966 -19.112 -9.308 21.830
Atomic orbital electron populations
1.23488 0.75187 1.05600 1.02024 1.86456 1.24620 1.32389 1.84188
1.24088 0.93008 0.81427 0.72412 1.90797 1.67862 1.37395 1.44836
1.21111 0.86809 0.93095 1.10070 1.21604 0.96841 0.98970 0.97177
0.83833 1.26191 0.92322 0.95565 0.95371 1.20655 0.97566 1.03283
0.91480 1.74666 1.16172 1.11844 1.03118 1.50117 1.03400 1.54021
1.19850 1.19034 0.96116 0.90485 0.78740 0.94472 1.22241 1.01160
0.98592 0.98461 1.21177 1.40409 1.00420 0.94638 0.94660 1.25715
0.94075 0.94497 1.03368 1.70003 1.43519 1.10700 1.33377 0.85928
0.80109 0.77647 0.79292 1.17312 1.21540 1.18392 1.22192 0.84161
0.79375 0.88339 1.90716 1.24071 1.58045 1.68246 0.84524 0.93576
0.91722 0.79969 0.86517 0.88354 0.89049 0.85314 0.91370 0.93107
0.92430 0.91938
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.53 10.56 113.37 1.20 1.72 16
2 O -0.36 -7.74 10.57 -51.45 -0.54 -8.28 16
3 C 0.45 11.72 7.66 71.24 0.55 12.27 16
4 O -0.52 -18.81 13.64 28.83 0.39 -18.41 16
5 C -0.07 -1.38 5.33 29.85 0.16 -1.22 16
6 C -0.12 -3.43 2.62 -11.74 -0.03 -3.46 16
7 H 0.14 3.86 7.96 -2.39 -0.02 3.84 16
8 C 0.10 2.54 6.93 46.83 0.32 2.86 16
9 C -0.07 -0.86 10.49 71.24 0.75 -0.12 16
10 N -0.25 -9.71 11.77 -40.85 -0.48 -10.19 16
11 N -0.46 -21.02 3.24 -444.24 -1.44 -22.46 16
12 C 0.26 13.44 2.57 44.24 0.11 13.55 16
13 H 0.04 2.10 6.75 -2.38 -0.02 2.08 16
14 C -0.15 -6.53 8.89 71.98 0.64 -5.89 16
15 C -0.53 -32.00 9.30 25.60 0.24 -31.77 16
16 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16
17 C 0.02 1.35 5.45 84.65 0.46 1.81 16
18 N -0.94 -59.49 13.96 21.45 0.30 -59.19 16
19 Si 0.94 45.78 24.37 68.60 1.67 47.45 16
20 H -0.25 -10.95 6.87 99.48 0.68 -10.27 16
21 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16
22 H -0.26 -12.23 6.53 99.48 0.65 -11.58 16
23 C 0.47 20.47 7.52 87.88 0.66 21.13 16
24 O -0.54 -27.43 15.48 17.48 0.27 -27.16 16
25 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16
26 H 0.05 0.97 8.13 -2.38 -0.02 0.95 16
27 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16
28 H 0.18 1.21 7.50 -2.38 -0.02 1.20 16
29 H 0.12 2.14 8.14 -2.38 -0.02 2.12 16
30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16
31 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16
32 H 0.13 0.36 7.49 -2.39 -0.02 0.35 16
33 H 0.07 2.98 8.14 -2.38 -0.02 2.96 16
34 H 0.05 2.25 3.28 -2.39 -0.01 2.24 16
35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16
36 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16
Total: -1.00 -88.50 305.31 6.24 -82.26
By element:
Atomic # 1 Polarization: 4.08 SS G_CDS: 1.01 Total: 5.09 kcal
Atomic # 6 Polarization: 5.83 SS G_CDS: 5.06 Total: 10.89 kcal
Atomic # 7 Polarization: -90.22 SS G_CDS: -1.62 Total: -91.84 kcal
Atomic # 8 Polarization: -53.97 SS G_CDS: 0.12 Total: -53.85 kcal
Atomic # 14 Polarization: 45.78 SS G_CDS: 1.67 Total: 47.45 kcal
Total: -88.50 6.24 -82.26 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601935625.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.245 kcal
(2) G-P(sol) polarization free energy of solvation -88.500 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.746 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.240 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.261 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.506 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds