Wall clock time and date at job start Mon Mar 30 2020 05:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 116.99914 * 2 1 4 4 O 1.20825 * 119.99820 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99975 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47288 * 180.02562 * 5 3 2 7 7 H 1.09002 * 110.54109 * 305.70178 * 6 5 3 8 8 C 1.51437 * 110.60718 * 182.84957 * 6 5 3 9 9 C 1.50699 * 126.41840 * 61.36612 * 8 6 5 10 10 N 1.27568 * 107.16819 * 241.32877 * 8 6 5 11 11 N 1.39151 * 113.16277 * 0.02562 * 10 8 6 12 12 C 1.46501 * 124.43673 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.47322 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47307 * 300.02043 * 12 11 10 15 15 C 1.50691 * 109.47641 * 60.02480 * 12 11 10 16 16 H 1.08008 * 120.00135 * 0.02562 * 15 12 11 17 17 C 1.37876 * 120.00347 * 179.97438 * 15 12 11 18 18 N 1.31519 * 119.99960 * 179.97438 * 17 15 12 19 19 Si 1.86794 * 119.99947 * 359.97438 * 17 15 12 20 20 H 1.48506 * 109.47194 * 90.00201 * 19 17 15 21 21 H 1.48501 * 109.47058 * 209.99811 * 19 17 15 22 22 H 1.48498 * 109.47094 * 330.00081 * 19 17 15 23 23 C 1.35305 * 111.16276 * 0.08925 * 11 10 8 24 24 O 1.21306 * 127.67875 * 179.91262 * 23 11 10 25 25 H 1.08997 * 109.47292 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47103 * 299.99850 * 1 2 3 27 27 H 1.08997 * 109.47393 * 59.99621 * 1 2 3 28 28 H 1.09005 * 109.46880 * 60.00083 * 5 3 2 29 29 H 1.09006 * 109.47175 * 300.00458 * 5 3 2 30 30 H 1.09001 * 109.47357 * 89.99958 * 9 8 6 31 31 H 1.09002 * 109.47446 * 209.99434 * 9 8 6 32 32 H 1.08995 * 109.46856 * 330.00128 * 9 8 6 33 33 H 1.09005 * 109.46976 * 60.00080 * 14 12 11 34 34 H 1.08995 * 109.47372 * 180.02562 * 14 12 11 35 35 H 1.08997 * 109.47085 * 300.00619 * 14 12 11 36 36 H 0.97001 * 120.00157 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 1 3.5370 3.2783 -0.8282 8 6 5.5088 2.8518 -0.0708 9 6 6.3906 2.3528 -1.1864 10 7 5.8935 3.4465 0.9902 11 7 4.8438 3.7884 1.8372 12 6 5.0051 4.4771 3.1201 13 1 4.0275 4.6224 3.5800 14 6 5.8834 3.6326 4.0455 15 6 5.6573 5.8164 2.8929 16 1 5.9246 6.1242 1.8927 17 6 5.9119 6.6495 3.9616 18 7 6.4816 7.8182 3.7632 19 14 5.4477 6.1183 5.6912 20 1 6.5856 5.3897 6.3074 21 1 5.1268 7.3165 6.5077 22 1 4.2618 5.2264 5.6336 23 6 3.6544 3.3995 1.3226 24 8 2.5528 3.5449 1.8093 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 3.9556 0.7810 -0.8909 29 1 3.9564 0.7805 0.8892 30 1 6.5149 3.1393 -1.9308 31 1 7.3651 2.0768 -0.7835 32 1 5.9297 1.4816 -1.6518 33 1 6.8610 3.4873 3.5857 34 1 6.0030 4.1448 5.0001 35 1 5.4116 2.6639 4.2099 36 1 6.6604 8.4045 4.5150 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601935625.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:25 Heat of formation + Delta-G solvation = -83.506019 kcal Electronic energy + Delta-G solvation = -21004.549833 eV Core-core repulsion = 17682.966055 eV Total energy + Delta-G solvation = -3321.583778 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.51095 -41.20678 -38.49218 -37.60875 -36.78902 -34.46392 -33.15862 -32.02598 -29.17714 -28.69882 -27.28442 -26.77231 -23.49219 -22.38463 -21.43760 -20.48804 -18.88206 -18.53495 -17.96862 -17.85778 -17.47690 -16.88176 -16.44428 -15.87393 -15.77902 -15.02811 -14.64865 -14.51609 -14.43341 -14.25724 -14.08484 -13.77903 -13.65067 -13.41352 -13.11486 -13.05877 -12.85812 -12.83769 -12.33219 -12.20375 -11.79526 -11.77307 -11.58029 -11.50720 -11.41497 -10.88176 -10.54514 -9.50214 -8.41574 -6.48219 0.66138 1.21881 1.22089 1.29925 1.38580 1.51651 1.73161 1.76762 2.20907 2.81473 2.94075 3.08225 3.44940 3.87291 3.95523 4.25439 4.31202 4.31691 4.33328 4.41381 4.43662 4.52951 4.62130 4.70814 4.71602 4.88960 4.99664 5.09991 5.26574 5.38099 5.40210 5.41950 5.66600 6.13979 6.51953 6.74813 6.82695 7.00305 7.17298 8.75333 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.024195 B = 0.005716 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.977730 B = 4896.967816 C = 5563.191027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.360 6.360 3 C 0.448 3.552 4 O -0.521 6.521 5 C -0.073 4.073 6 C -0.122 4.122 7 H 0.144 0.856 8 C 0.099 3.901 9 C -0.072 4.072 10 N -0.252 5.252 11 N -0.456 5.456 12 C 0.258 3.742 13 H 0.038 0.962 14 C -0.147 4.147 15 C -0.528 4.528 16 H 0.035 0.965 17 C 0.022 3.978 18 N -0.937 5.937 19 Si 0.945 3.055 20 H -0.248 1.248 21 H -0.288 1.288 22 H -0.259 1.259 23 C 0.472 3.528 24 O -0.536 6.536 25 H 0.137 0.863 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.183 0.817 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.129 0.871 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.664 -20.983 -11.198 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.291 3.709 4 O -0.409 6.409 5 C -0.111 4.111 6 C -0.146 4.146 7 H 0.162 0.838 8 C -0.094 4.094 9 C -0.130 4.130 10 N -0.058 5.058 11 N -0.274 5.274 12 C 0.156 3.844 13 H 0.055 0.945 14 C -0.205 4.205 15 C -0.566 4.566 16 H 0.053 0.947 17 C -0.177 4.177 18 N -0.576 5.576 19 Si 0.770 3.230 20 H -0.173 1.173 21 H -0.215 1.215 22 H -0.184 1.184 23 C 0.259 3.741 24 O -0.411 6.411 25 H 0.155 0.845 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.200 0.800 29 H 0.135 0.865 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.147 0.853 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.685 -19.986 -10.118 22.702 hybrid contribution -1.281 0.874 0.810 1.750 sum -4.966 -19.112 -9.308 21.830 Atomic orbital electron populations 1.23488 0.75187 1.05600 1.02024 1.86456 1.24620 1.32389 1.84188 1.24088 0.93008 0.81427 0.72412 1.90797 1.67862 1.37395 1.44836 1.21111 0.86809 0.93095 1.10070 1.21604 0.96841 0.98970 0.97177 0.83833 1.26191 0.92322 0.95565 0.95371 1.20655 0.97566 1.03283 0.91480 1.74666 1.16172 1.11844 1.03118 1.50117 1.03400 1.54021 1.19850 1.19034 0.96116 0.90485 0.78740 0.94472 1.22241 1.01160 0.98592 0.98461 1.21177 1.40409 1.00420 0.94638 0.94660 1.25715 0.94075 0.94497 1.03368 1.70003 1.43519 1.10700 1.33377 0.85928 0.80109 0.77647 0.79292 1.17312 1.21540 1.18392 1.22192 0.84161 0.79375 0.88339 1.90716 1.24071 1.58045 1.68246 0.84524 0.93576 0.91722 0.79969 0.86517 0.88354 0.89049 0.85314 0.91370 0.93107 0.92430 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.72 16 2 O -0.36 -7.74 10.57 -51.45 -0.54 -8.28 16 3 C 0.45 11.72 7.66 71.24 0.55 12.27 16 4 O -0.52 -18.81 13.64 28.83 0.39 -18.41 16 5 C -0.07 -1.38 5.33 29.85 0.16 -1.22 16 6 C -0.12 -3.43 2.62 -11.74 -0.03 -3.46 16 7 H 0.14 3.86 7.96 -2.39 -0.02 3.84 16 8 C 0.10 2.54 6.93 46.83 0.32 2.86 16 9 C -0.07 -0.86 10.49 71.24 0.75 -0.12 16 10 N -0.25 -9.71 11.77 -40.85 -0.48 -10.19 16 11 N -0.46 -21.02 3.24 -444.24 -1.44 -22.46 16 12 C 0.26 13.44 2.57 44.24 0.11 13.55 16 13 H 0.04 2.10 6.75 -2.38 -0.02 2.08 16 14 C -0.15 -6.53 8.89 71.98 0.64 -5.89 16 15 C -0.53 -32.00 9.30 25.60 0.24 -31.77 16 16 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 17 C 0.02 1.35 5.45 84.65 0.46 1.81 16 18 N -0.94 -59.49 13.96 21.45 0.30 -59.19 16 19 Si 0.94 45.78 24.37 68.60 1.67 47.45 16 20 H -0.25 -10.95 6.87 99.48 0.68 -10.27 16 21 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 22 H -0.26 -12.23 6.53 99.48 0.65 -11.58 16 23 C 0.47 20.47 7.52 87.88 0.66 21.13 16 24 O -0.54 -27.43 15.48 17.48 0.27 -27.16 16 25 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.05 0.97 8.13 -2.38 -0.02 0.95 16 27 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 28 H 0.18 1.21 7.50 -2.38 -0.02 1.20 16 29 H 0.12 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 32 H 0.13 0.36 7.49 -2.39 -0.02 0.35 16 33 H 0.07 2.98 8.14 -2.38 -0.02 2.96 16 34 H 0.05 2.25 3.28 -2.39 -0.01 2.24 16 35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -88.50 305.31 6.24 -82.26 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: 1.01 Total: 5.09 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 5.06 Total: 10.89 kcal Atomic # 7 Polarization: -90.22 SS G_CDS: -1.62 Total: -91.84 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: 0.12 Total: -53.85 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.67 Total: 47.45 kcal Total: -88.50 6.24 -82.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601935625.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.245 kcal (2) G-P(sol) polarization free energy of solvation -88.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds