Wall clock time and date at job start Mon Mar 30 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30133 * 126.21941 * 2 1 4 4 N 1.28664 * 109.51431 * 179.97438 * 3 2 1 5 5 C 1.30974 * 109.32018 * 359.97438 * 4 3 2 6 6 N 1.38726 * 126.35570 * 180.02562 * 5 4 3 7 7 C 1.34775 * 120.00071 * 359.97438 * 6 5 4 8 8 O 1.21278 * 120.00003 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99829 * 179.97438 * 7 6 5 10 10 H 1.09001 * 109.47026 * 319.99581 * 9 7 6 11 11 N 1.46899 * 109.47078 * 199.99950 * 9 7 6 12 12 C 1.52998 * 109.47357 * 79.99657 * 9 7 6 13 13 C 1.52995 * 109.47088 * 185.00050 * 12 9 7 14 14 C 1.52998 * 109.47088 * 180.02562 * 13 12 9 15 15 C 1.50699 * 109.47425 * 179.97438 * 14 13 12 16 16 H 1.08010 * 119.99743 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00448 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00374 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99712 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47093 * 89.99667 * 19 17 15 21 21 H 1.48502 * 109.46717 * 209.99605 * 19 17 15 22 22 H 1.48503 * 109.47059 * 329.99261 * 19 17 15 23 23 O 1.34575 * 107.28179 * 0.02562 * 5 4 3 24 24 H 1.08997 * 109.46892 * 90.03184 * 1 2 3 25 25 H 1.09002 * 109.46936 * 210.02322 * 1 2 3 26 26 H 1.08996 * 109.46947 * 330.02737 * 1 2 3 27 27 H 0.96998 * 119.99508 * 179.97438 * 6 5 4 28 28 H 1.00900 * 111.00185 * 300.00078 * 11 9 7 29 29 H 1.00901 * 110.99813 * 63.95047 * 11 9 7 30 30 H 1.09000 * 109.47073 * 305.00371 * 12 9 7 31 31 H 1.08997 * 109.47116 * 64.99651 * 12 9 7 32 32 H 1.09000 * 109.47425 * 300.00105 * 13 12 9 33 33 H 1.09005 * 109.47532 * 60.00142 * 13 12 9 34 34 H 1.08994 * 109.47343 * 300.00000 * 14 13 12 35 35 H 1.08997 * 109.47270 * 60.00133 * 14 13 12 36 36 H 0.96999 * 120.00097 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0499 0.0000 4 7 3.5083 0.6800 0.0005 5 6 3.5681 -0.6283 0.0015 6 7 4.7217 -1.3989 0.0028 7 6 5.9303 -0.8026 0.0027 8 8 6.0095 0.4076 0.0010 9 6 7.1835 -1.6397 0.0047 10 1 7.0479 -2.4951 0.6664 11 7 8.3133 -0.8288 0.4779 12 6 7.4693 -2.1334 -1.4150 13 6 8.6683 -3.0836 -1.3927 14 6 8.9545 -3.5768 -2.8125 15 6 10.1358 -4.5122 -2.7908 16 1 10.6326 -4.7332 -1.8575 17 6 10.5820 -5.0868 -3.9620 18 7 11.6133 -5.9027 -3.9431 19 14 9.7224 -4.7052 -5.5760 20 1 10.3572 -3.5201 -6.2068 21 1 9.8385 -5.8724 -6.4866 22 1 8.2882 -4.4197 -5.3176 23 8 2.3027 -1.0863 0.0009 24 1 -0.3633 -0.0006 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5134 27 1 4.6583 -2.3668 0.0037 28 1 8.4595 -0.0289 -0.1195 29 1 8.1777 -0.5443 1.4364 30 1 6.5956 -2.6597 -1.7994 31 1 7.6924 -1.2819 -2.0578 32 1 9.5419 -2.5573 -1.0083 33 1 8.4452 -3.9352 -0.7499 34 1 8.0810 -4.1030 -3.1973 35 1 9.1778 -2.7251 -3.4549 36 1 11.9273 -6.3067 -4.7672 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691563089.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:45 Heat of formation + Delta-G solvation = 3.591696 kcal Electronic energy + Delta-G solvation = -19715.755161 eV Core-core repulsion = 16430.240975 eV Total energy + Delta-G solvation = -3285.514186 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -44.45051 -40.56711 -36.47931 -36.25722 -35.60379 -33.46988 -32.60554 -31.63906 -28.81625 -28.02217 -25.92905 -23.97358 -22.94677 -22.23213 -20.47940 -20.12807 -19.02941 -17.93245 -17.55040 -16.75668 -16.65203 -16.15372 -15.26384 -14.96716 -14.81117 -14.42907 -14.09975 -13.72955 -13.33070 -13.30500 -12.68672 -12.67631 -12.13930 -12.07012 -11.95373 -11.56885 -11.50010 -11.20965 -10.95946 -10.78618 -10.65519 -9.94764 -9.72008 -9.58771 -9.19553 -9.06261 -8.94609 -8.52709 -6.03170 -4.00794 0.79278 1.12083 1.93896 2.45261 2.81350 3.30909 3.38290 3.40822 3.89020 3.97732 4.35358 4.45686 4.51606 4.72112 4.83583 4.84313 4.91730 5.05724 5.14450 5.30911 5.43684 5.62638 5.71458 5.81829 6.14554 6.50673 6.54836 6.67484 6.87969 6.93635 7.24810 7.35083 7.46536 7.49078 7.81022 8.13655 8.55915 9.02950 9.59670 11.10406 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027564 B = 0.003417 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.570623 B = 8193.268069 C = 8836.009830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.148 3.852 3 N -0.272 5.272 4 N -0.272 5.272 5 C 0.385 3.615 6 N -0.615 5.615 7 C 0.482 3.518 8 O -0.473 6.473 9 C 0.092 3.908 10 H 0.113 0.887 11 N -0.804 5.804 12 C -0.111 4.111 13 C -0.092 4.092 14 C -0.016 4.016 15 C -0.518 4.518 16 H 0.072 0.928 17 C 0.065 3.935 18 N -0.905 5.905 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.267 1.267 23 O -0.240 6.240 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.107 0.893 27 H 0.429 0.571 28 H 0.355 0.645 29 H 0.344 0.656 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.012 0.988 35 H 0.010 0.990 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.820 8.508 9.935 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.065 4.065 3 N -0.119 5.119 4 N -0.127 5.127 5 C 0.085 3.915 6 N -0.275 5.275 7 C 0.268 3.732 8 O -0.339 6.339 9 C -0.024 4.024 10 H 0.131 0.869 11 N -0.333 5.333 12 C -0.150 4.150 13 C -0.130 4.130 14 C -0.054 4.054 15 C -0.556 4.556 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.544 5.544 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.192 1.192 23 O -0.120 6.120 24 H 0.116 0.884 25 H 0.110 0.890 26 H 0.125 0.875 27 H 0.268 0.732 28 H 0.170 0.830 29 H 0.157 0.843 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.028 0.972 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.693 9.877 9.687 24.892 hybrid contribution -1.570 -0.989 -0.851 2.042 sum -22.263 8.888 8.836 25.548 Atomic orbital electron populations 1.20322 0.79799 1.05606 1.05224 1.27698 0.97182 0.78904 1.02671 1.74381 0.96022 1.25497 1.16048 1.75239 1.10707 1.05187 1.21517 1.23712 0.80135 0.88528 0.99155 1.43219 1.00175 1.10749 1.73315 1.23522 0.84023 0.90778 0.74914 1.90861 1.85320 1.14046 1.43686 1.21868 0.83349 0.95779 1.01453 0.86939 1.59071 1.37785 1.28689 1.07781 1.21790 1.01156 1.00768 0.91237 1.21382 0.95547 0.96538 0.99523 1.19605 0.97026 0.96056 0.92687 1.21156 1.12959 1.25764 0.95698 0.90940 1.25047 0.94754 0.94757 0.99052 1.69918 1.25440 1.31254 1.27778 0.86785 0.80723 0.77888 0.83878 1.20330 1.21477 1.19159 1.84745 1.16033 1.38635 1.72554 0.88388 0.88989 0.87461 0.73227 0.83037 0.84305 0.91612 0.91388 0.91004 0.92763 0.96965 0.97173 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.22 10.51 36.01 0.38 0.16 16 2 C 0.15 1.50 8.48 -13.00 -0.11 1.39 16 3 N -0.27 -3.80 12.21 32.58 0.40 -3.40 16 4 N -0.27 -4.31 10.46 29.94 0.31 -4.00 16 5 C 0.38 4.97 9.08 -86.51 -0.79 4.18 16 6 N -0.61 -6.39 5.39 -12.95 -0.07 -6.46 16 7 C 0.48 5.90 7.03 -10.98 -0.08 5.82 16 8 O -0.47 -7.54 14.97 5.56 0.08 -7.46 16 9 C 0.09 1.02 3.15 -68.86 -0.22 0.81 16 10 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 11 N -0.80 -9.31 8.44 -5.65 -0.05 -9.35 16 12 C -0.11 -1.53 4.84 -26.73 -0.13 -1.66 16 13 C -0.09 -1.66 5.04 -26.73 -0.13 -1.79 16 14 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 15 C -0.52 -14.56 9.66 -34.44 -0.33 -14.89 16 16 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 17 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 18 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 19 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 23 O -0.24 -2.61 10.90 4.00 0.04 -2.57 16 24 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.43 2.84 8.82 -40.82 -0.36 2.48 16 28 H 0.35 4.30 8.58 -39.29 -0.34 3.96 16 29 H 0.34 3.39 9.06 -39.29 -0.36 3.03 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.37 7.75 -51.93 -0.40 0.96 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 35 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 314.12 15.07 4.73 4.73 Total: -1.00 -36.56 314.12 -4.83 -41.39 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -4.77 Total: 1.91 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.62 Total: -4.70 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 1.37 Total: -50.29 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.13 Total: -10.02 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.56 -4.83 -41.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691563089.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.984 kcal (2) G-P(sol) polarization free energy of solvation -36.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds