Wall clock time and date at job start Mon Mar 30 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30133 * 126.21941 * 2 1 4 4 N 1.28664 * 109.51431 * 179.97438 * 3 2 1 5 5 C 1.30974 * 109.32018 * 359.97438 * 4 3 2 6 6 N 1.38726 * 126.35570 * 180.02562 * 5 4 3 7 7 C 1.34775 * 120.00071 * 359.97438 * 6 5 4 8 8 O 1.21278 * 120.00003 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99829 * 179.97438 * 7 6 5 10 10 H 1.09001 * 109.47026 * 319.99581 * 9 7 6 11 11 N 1.46899 * 109.47078 * 199.99950 * 9 7 6 12 12 C 1.52998 * 109.47357 * 79.99657 * 9 7 6 13 13 C 1.52995 * 109.47088 * 185.00050 * 12 9 7 14 14 C 1.52998 * 109.47088 * 180.02562 * 13 12 9 15 15 C 1.50699 * 109.47425 * 179.97438 * 14 13 12 16 16 H 1.08010 * 119.99743 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00448 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00374 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99712 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47093 * 89.99667 * 19 17 15 21 21 H 1.48502 * 109.46717 * 209.99605 * 19 17 15 22 22 H 1.48503 * 109.47059 * 329.99261 * 19 17 15 23 23 O 1.34575 * 107.28179 * 0.02562 * 5 4 3 24 24 H 1.08997 * 109.46892 * 90.03184 * 1 2 3 25 25 H 1.09002 * 109.46936 * 210.02322 * 1 2 3 26 26 H 1.08996 * 109.46947 * 330.02737 * 1 2 3 27 27 H 0.96998 * 119.99508 * 179.97438 * 6 5 4 28 28 H 1.00900 * 111.00185 * 300.00078 * 11 9 7 29 29 H 1.00901 * 110.99813 * 63.95047 * 11 9 7 30 30 H 1.09000 * 109.47073 * 305.00371 * 12 9 7 31 31 H 1.08997 * 109.47116 * 64.99651 * 12 9 7 32 32 H 1.09000 * 109.47425 * 300.00105 * 13 12 9 33 33 H 1.09005 * 109.47532 * 60.00142 * 13 12 9 34 34 H 1.08994 * 109.47343 * 300.00000 * 14 13 12 35 35 H 1.08997 * 109.47270 * 60.00133 * 14 13 12 36 36 H 0.96999 * 120.00097 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0499 0.0000 4 7 3.5083 0.6800 0.0005 5 6 3.5681 -0.6283 0.0015 6 7 4.7217 -1.3989 0.0028 7 6 5.9303 -0.8026 0.0027 8 8 6.0095 0.4076 0.0010 9 6 7.1835 -1.6397 0.0047 10 1 7.0479 -2.4951 0.6664 11 7 8.3133 -0.8288 0.4779 12 6 7.4693 -2.1334 -1.4150 13 6 8.6683 -3.0836 -1.3927 14 6 8.9545 -3.5768 -2.8125 15 6 10.1358 -4.5122 -2.7908 16 1 10.6326 -4.7332 -1.8575 17 6 10.5820 -5.0868 -3.9620 18 7 11.6133 -5.9027 -3.9431 19 14 9.7224 -4.7052 -5.5760 20 1 10.3572 -3.5201 -6.2068 21 1 9.8385 -5.8724 -6.4866 22 1 8.2882 -4.4197 -5.3176 23 8 2.3027 -1.0863 0.0009 24 1 -0.3633 -0.0006 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5134 27 1 4.6583 -2.3668 0.0037 28 1 8.4595 -0.0289 -0.1195 29 1 8.1777 -0.5443 1.4364 30 1 6.5956 -2.6597 -1.7994 31 1 7.6924 -1.2819 -2.0578 32 1 9.5419 -2.5573 -1.0083 33 1 8.4452 -3.9352 -0.7499 34 1 8.0810 -4.1030 -3.1973 35 1 9.1778 -2.7251 -3.4549 36 1 11.9273 -6.3067 -4.7672 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691563089.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:42 Heat of formation + Delta-G solvation = -29.595304 kcal Electronic energy + Delta-G solvation = -19717.194257 eV Core-core repulsion = 16430.240975 eV Total energy + Delta-G solvation = -3286.953283 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -45.33019 -41.53692 -37.42849 -37.34272 -36.60470 -35.23371 -33.41054 -33.23602 -30.06493 -28.97613 -27.19112 -25.20241 -23.80656 -23.50531 -21.73270 -21.41429 -19.92094 -18.89281 -18.77186 -18.49469 -17.48968 -17.20177 -16.35960 -16.21025 -15.87974 -15.54844 -15.49631 -14.80698 -14.47229 -14.13568 -13.78218 -13.62361 -13.58894 -13.33295 -13.03171 -12.98170 -12.47943 -12.42971 -12.37797 -12.08213 -11.83159 -11.70284 -11.39603 -11.23088 -11.18432 -10.71946 -9.96462 -9.91990 -8.25073 -6.27998 -0.06314 0.27089 1.03460 1.38543 1.38967 1.50822 1.51720 2.06544 2.39076 3.00787 3.10792 3.30678 3.46384 3.77745 3.83544 3.90266 4.09744 4.33323 4.46500 4.58324 4.59681 4.72093 4.83681 4.88061 5.06911 5.07431 5.12505 5.22458 5.68049 5.71911 5.74127 5.79044 6.01415 6.34671 6.39300 6.60016 6.81569 7.25336 7.36456 8.91912 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027564 B = 0.003417 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.570623 B = 8193.268069 C = 8836.009830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.169 3.831 3 N -0.319 5.319 4 N -0.319 5.319 5 C 0.377 3.623 6 N -0.598 5.598 7 C 0.491 3.509 8 O -0.512 6.512 9 C 0.104 3.896 10 H 0.144 0.856 11 N -0.813 5.813 12 C -0.103 4.103 13 C -0.082 4.082 14 C -0.017 4.017 15 C -0.527 4.527 16 H 0.033 0.967 17 C 0.000 4.000 18 N -0.955 5.955 19 Si 0.950 3.050 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.243 1.243 23 O -0.234 6.234 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.447 0.553 28 H 0.350 0.650 29 H 0.354 0.646 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.023 0.977 35 H 0.010 0.990 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.808 8.385 9.629 27.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.044 4.044 3 N -0.165 5.165 4 N -0.173 5.173 5 C 0.076 3.924 6 N -0.260 5.260 7 C 0.277 3.723 8 O -0.382 6.382 9 C -0.013 4.013 10 H 0.161 0.839 11 N -0.342 5.342 12 C -0.141 4.141 13 C -0.120 4.120 14 C -0.054 4.054 15 C -0.565 4.565 16 H 0.051 0.949 17 C -0.196 4.196 18 N -0.596 5.596 19 Si 0.774 3.226 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.166 1.166 23 O -0.114 6.114 24 H 0.137 0.863 25 H 0.136 0.864 26 H 0.139 0.861 27 H 0.290 0.710 28 H 0.165 0.835 29 H 0.168 0.832 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.029 0.971 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.714 9.746 9.409 27.311 hybrid contribution -0.671 -0.995 -0.672 1.375 sum -24.385 8.752 8.737 27.341 Atomic orbital electron populations 1.20755 0.75649 1.07514 1.07058 1.28928 0.98821 0.77865 0.98762 1.74308 0.95988 1.27172 1.18988 1.75122 1.12116 1.06969 1.23102 1.23786 0.81167 0.88317 0.99140 1.43059 0.99089 1.11494 1.72375 1.23617 0.84571 0.90176 0.73955 1.90857 1.85898 1.15836 1.45559 1.21800 0.82594 0.96359 1.00501 0.83898 1.59107 1.37972 1.28699 1.08467 1.21619 0.99972 0.99585 0.92935 1.21176 0.96944 0.97463 0.96426 1.19602 0.94994 0.94910 0.95932 1.21574 1.14310 1.26414 0.94211 0.94882 1.26046 0.95560 0.94614 1.03427 1.70081 1.27542 1.32995 1.28991 0.85666 0.80676 0.77722 0.78586 1.19777 1.21200 1.16581 1.84784 1.15338 1.38712 1.72569 0.86309 0.86391 0.86132 0.71043 0.83526 0.83214 0.89394 0.92337 0.92575 0.92174 0.95882 0.97114 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.27 10.51 71.24 0.75 0.48 16 2 C 0.17 3.10 8.48 88.36 0.75 3.85 16 3 N -0.32 -8.75 12.21 -165.31 -2.02 -10.76 16 4 N -0.32 -10.08 10.46 -173.30 -1.81 -11.90 16 5 C 0.38 9.27 9.08 178.91 1.62 10.89 16 6 N -0.60 -11.18 5.39 -423.21 -2.28 -13.46 16 7 C 0.49 11.20 7.03 87.66 0.62 11.82 16 8 O -0.51 -16.15 14.97 -3.02 -0.05 -16.20 16 9 C 0.10 2.07 3.15 44.17 0.14 2.21 16 10 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 11 N -0.81 -17.83 8.44 -171.80 -1.45 -19.28 16 12 C -0.10 -2.58 4.84 30.59 0.15 -2.43 16 13 C -0.08 -2.84 5.04 30.59 0.15 -2.69 16 14 C -0.02 -0.75 4.04 29.85 0.12 -0.63 16 15 C -0.53 -29.96 9.66 25.60 0.25 -29.71 16 16 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 17 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 18 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 19 Si 0.95 44.05 27.47 68.60 1.88 45.93 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 22 H -0.24 -10.21 6.54 99.48 0.65 -9.55 16 23 O -0.23 -4.61 10.90 -8.60 -0.09 -4.70 16 24 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 25 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 26 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.45 4.55 8.82 -92.71 -0.82 3.73 16 28 H 0.35 8.31 8.58 -89.69 -0.77 7.54 16 29 H 0.35 6.55 9.06 -89.69 -0.81 5.74 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 2.10 7.75 -2.39 -0.02 2.08 16 33 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 35 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 36 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -82.36 314.12 -1.83 -84.18 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -1.32 Total: 11.76 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 5.01 Total: -5.77 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -7.26 Total: -115.20 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.14 Total: -20.90 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Total: -82.36 -1.83 -84.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691563089.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.589 kcal (2) G-P(sol) polarization free energy of solvation -82.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds