Wall clock time and date at job start Mon Mar 30 2020 06:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30134 * 126.21743 * 2 1 4 4 N 1.28664 * 109.51856 * 180.02562 * 3 2 1 5 5 C 1.30977 * 109.31270 * 359.97438 * 4 3 2 6 6 N 1.38728 * 126.35166 * 179.97438 * 5 4 3 7 7 C 1.34772 * 120.00370 * 0.03079 * 6 5 4 8 8 O 1.21274 * 120.00172 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00040 * 179.97438 * 7 6 5 10 10 H 1.09002 * 109.46941 * 40.00029 * 9 7 6 11 11 N 1.46900 * 109.47136 * 159.99506 * 9 7 6 12 12 C 1.52998 * 109.47225 * 279.99791 * 9 7 6 13 13 C 1.53005 * 109.47331 * 174.99904 * 12 9 7 14 14 C 1.52995 * 109.46996 * 180.02562 * 13 12 9 15 15 C 1.50701 * 109.46664 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00600 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99898 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99718 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00052 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46777 * 89.99907 * 19 17 15 21 21 H 1.48497 * 109.46933 * 210.00049 * 19 17 15 22 22 H 1.48504 * 109.46871 * 329.99914 * 19 17 15 23 23 O 1.34570 * 107.28601 * 0.02562 * 5 4 3 24 24 H 1.08999 * 109.47151 * 89.97411 * 1 2 3 25 25 H 1.08996 * 109.46718 * 209.97318 * 1 2 3 26 26 H 1.09006 * 109.47150 * 329.97264 * 1 2 3 27 27 H 0.96999 * 119.99742 * 180.02562 * 6 5 4 28 28 H 1.00891 * 111.00247 * 296.04810 * 11 9 7 29 29 H 1.00908 * 110.99537 * 60.00292 * 11 9 7 30 30 H 1.08997 * 109.47449 * 294.99857 * 12 9 7 31 31 H 1.08997 * 109.47260 * 55.00075 * 12 9 7 32 32 H 1.08997 * 109.46816 * 300.00341 * 13 12 9 33 33 H 1.08997 * 109.46809 * 59.99894 * 13 12 9 34 34 H 1.09005 * 109.47208 * 299.99661 * 14 13 12 35 35 H 1.08997 * 109.47543 * 60.00203 * 14 13 12 36 36 H 0.97000 * 119.99818 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2759 1.0499 0.0000 4 7 3.5083 0.6802 -0.0005 5 6 3.5680 -0.6282 -0.0004 6 7 4.7217 -1.3987 -0.0013 7 6 5.9303 -0.8024 -0.0019 8 8 6.0095 0.4077 -0.0021 9 6 7.1835 -1.6395 -0.0023 10 1 7.0480 -2.4960 -0.6628 11 7 8.3133 -0.8293 -0.4768 12 6 7.4691 -2.1308 1.4182 13 6 8.6682 -3.0811 1.3978 14 6 8.9533 -3.5728 2.8182 15 6 10.1347 -4.5082 2.7981 16 1 10.6321 -4.7302 1.8655 17 6 10.5807 -5.0809 3.9705 18 7 9.9753 -4.8103 5.1062 19 14 12.0446 -6.2409 3.9455 20 1 13.2950 -5.4641 4.1403 21 1 11.9054 -7.2371 5.0379 22 1 12.0970 -6.9438 2.6384 23 8 2.3027 -1.0863 -0.0002 24 1 -0.3633 0.0005 -1.0277 25 1 -0.3632 -0.8902 0.5134 26 1 -0.3634 0.8898 0.5143 27 1 4.6584 -2.3666 -0.0014 28 1 8.1780 -0.5464 -1.4357 29 1 8.4594 -0.0284 0.1194 30 1 7.6921 -1.2783 2.0596 31 1 6.5955 -2.6566 1.8033 32 1 8.4451 -3.9336 0.7563 33 1 9.5418 -2.5553 1.0126 34 1 9.1762 -2.7204 3.4600 35 1 8.0796 -4.0987 3.2030 36 1 10.2888 -5.2134 5.9309 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691563090.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:49 Heat of formation + Delta-G solvation = -32.139450 kcal Electronic energy + Delta-G solvation = -19655.184136 eV Core-core repulsion = 16368.120531 eV Total energy + Delta-G solvation = -3287.063605 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.33221 -41.53860 -37.41439 -37.33165 -36.60494 -35.27825 -33.28730 -33.13020 -29.81091 -28.89337 -27.12871 -25.33041 -23.89916 -23.60979 -21.80936 -21.40470 -19.92717 -18.81994 -18.50518 -18.42181 -17.49089 -17.16911 -16.47119 -16.28083 -15.88149 -15.53837 -15.46400 -14.61334 -14.30683 -14.12387 -13.68740 -13.62187 -13.59044 -13.15140 -13.02419 -12.87693 -12.52697 -12.45190 -12.38966 -12.22864 -12.06060 -11.70871 -11.37259 -11.22314 -11.00952 -10.50603 -9.96538 -9.92301 -8.15987 -6.25922 -0.06556 0.27006 1.03276 1.42797 1.43925 1.51295 1.54842 2.06651 2.44439 3.01364 3.17707 3.30585 3.46147 3.77941 3.84015 3.90167 4.09618 4.33441 4.49686 4.60060 4.63828 4.72085 4.83840 4.91221 5.07434 5.14610 5.28166 5.36956 5.63294 5.72275 5.86898 5.96597 6.00401 6.31610 6.39145 6.59635 6.92862 7.25088 7.43315 8.95793 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.033862 B = 0.003097 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.694054 B = 9039.549945 C = 9562.382189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.169 3.831 3 N -0.319 5.319 4 N -0.319 5.319 5 C 0.377 3.623 6 N -0.599 5.599 7 C 0.490 3.510 8 O -0.512 6.512 9 C 0.106 3.894 10 H 0.146 0.854 11 N -0.811 5.811 12 C -0.101 4.101 13 C -0.084 4.084 14 C 0.019 3.981 15 C -0.537 4.537 16 H 0.062 0.938 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.962 3.038 20 H -0.276 1.276 21 H -0.284 1.284 22 H -0.260 1.260 23 O -0.234 6.234 24 H 0.122 0.878 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.447 0.553 28 H 0.354 0.646 29 H 0.350 0.650 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.059 0.941 34 H -0.017 1.017 35 H -0.006 1.006 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.758 4.384 -13.899 23.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.044 4.044 3 N -0.164 5.164 4 N -0.173 5.173 5 C 0.076 3.924 6 N -0.261 5.261 7 C 0.276 3.724 8 O -0.382 6.382 9 C -0.010 4.010 10 H 0.164 0.836 11 N -0.340 5.340 12 C -0.139 4.139 13 C -0.121 4.121 14 C -0.018 4.018 15 C -0.575 4.575 16 H 0.080 0.920 17 C -0.201 4.201 18 N -0.577 5.577 19 Si 0.787 3.213 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.184 1.184 23 O -0.114 6.114 24 H 0.140 0.860 25 H 0.135 0.865 26 H 0.138 0.862 27 H 0.289 0.711 28 H 0.169 0.831 29 H 0.164 0.836 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.001 0.999 35 H 0.012 0.988 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.761 5.808 -13.606 23.115 hybrid contribution -0.286 -1.290 0.503 1.414 sum -18.047 4.518 -13.103 22.755 Atomic orbital electron populations 1.20759 0.75584 1.07439 1.07164 1.28945 0.98845 0.77856 0.98756 1.74302 0.95967 1.27175 1.18996 1.75125 1.12132 1.06939 1.23098 1.23784 0.81168 0.88325 0.99157 1.43059 0.99134 1.11497 1.72364 1.23636 0.84619 0.90200 0.73929 1.90850 1.85914 1.15828 1.45589 1.21783 0.82619 0.96423 1.00180 0.83635 1.59101 1.37848 1.28623 1.08442 1.21570 1.00056 0.99402 0.92866 1.21286 0.96739 0.97352 0.96749 1.19074 0.94953 0.94246 0.93510 1.21758 1.14983 1.26982 0.93793 0.91974 1.25983 1.00079 0.98728 0.95312 1.70101 1.42792 1.45774 0.99064 0.85492 0.79179 0.78501 0.78156 1.20150 1.20978 1.18423 1.84781 1.15317 1.38735 1.72567 0.85993 0.86537 0.86229 0.71075 0.83129 0.83633 0.93251 0.90238 0.91836 0.92228 0.99876 0.98807 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.32 10.51 71.24 0.75 0.43 16 2 C 0.17 3.31 8.48 88.36 0.75 4.06 16 3 N -0.32 -9.15 12.21 -165.31 -2.02 -11.17 16 4 N -0.32 -10.56 10.46 -173.31 -1.81 -12.38 16 5 C 0.38 9.90 9.08 178.91 1.62 11.53 16 6 N -0.60 -12.36 5.39 -423.22 -2.28 -14.65 16 7 C 0.49 12.16 7.03 87.66 0.62 12.77 16 8 O -0.51 -17.10 14.97 -3.01 -0.05 -17.15 16 9 C 0.11 2.31 3.15 44.17 0.14 2.45 16 10 H 0.15 2.21 8.14 -2.39 -0.02 2.19 16 11 N -0.81 -18.60 8.44 -171.80 -1.45 -20.05 16 12 C -0.10 -2.91 4.84 30.60 0.15 -2.76 16 13 C -0.08 -3.09 5.04 30.59 0.15 -2.94 16 14 C 0.02 0.98 4.97 29.85 0.15 1.13 16 15 C -0.54 -30.02 9.11 25.60 0.23 -29.78 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 17 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 18 N -0.94 -57.02 13.29 21.45 0.28 -56.73 16 19 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 23 O -0.23 -4.96 10.90 -8.51 -0.09 -5.05 16 24 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 25 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 26 H 0.12 0.52 8.14 -2.38 -0.02 0.51 16 27 H 0.45 5.45 8.82 -92.71 -0.82 4.64 16 28 H 0.35 6.73 9.06 -89.70 -0.81 5.92 16 29 H 0.35 8.84 8.58 -89.69 -0.77 8.07 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.06 2.28 7.75 -2.39 -0.02 2.26 16 34 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 35 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 36 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -80.62 317.72 -1.63 -82.25 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -1.27 Total: 11.80 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 5.02 Total: -2.87 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -7.28 Total: -114.97 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.14 Total: -22.20 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -80.62 -1.63 -82.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691563090.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.111 kcal (2) G-P(sol) polarization free energy of solvation -80.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds