Wall clock time and date at job start Mon Mar 30 2020 06:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34775 * 120.00159 * 2 1 4 4 O 1.21276 * 120.00120 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00090 * 0.02562 * 3 2 1 6 6 H 1.09006 * 109.46874 * 319.99489 * 5 3 2 7 7 N 1.46896 * 109.47118 * 199.99834 * 5 3 2 8 8 C 1.52998 * 109.47409 * 79.99338 * 5 3 2 9 9 C 1.52998 * 109.47259 * 185.00162 * 8 5 3 10 10 C 1.50695 * 109.47479 * 180.02562 * 9 8 5 11 11 H 1.08003 * 119.99743 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00187 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00303 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99954 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47310 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47467 * 119.99938 * 14 12 10 17 17 H 1.48507 * 109.47363 * 239.99934 * 14 12 10 18 18 C 1.38856 * 119.99926 * 180.02562 * 2 1 3 19 19 N 1.31386 * 126.42771 * 176.34104 * 18 2 1 20 20 N 1.28424 * 110.52622 * 179.81682 * 19 18 2 21 21 N 1.28913 * 110.29325 * 0.46571 * 20 19 18 22 22 N 1.35255 * 126.43125 * 356.66068 * 18 2 1 23 23 C 1.46499 * 127.37932 * 359.95935 * 22 18 2 24 24 H 1.09007 * 109.47033 * 264.83005 * 1 2 3 25 25 H 1.09000 * 109.47098 * 24.82383 * 1 2 3 26 26 H 1.08998 * 109.47397 * 144.82912 * 1 2 3 27 27 H 1.00901 * 110.99778 * 176.04319 * 7 5 3 28 28 H 1.00900 * 110.99757 * 299.99046 * 7 5 3 29 29 H 1.09002 * 109.47125 * 305.00539 * 8 5 3 30 30 H 1.09001 * 109.46987 * 65.00157 * 8 5 3 31 31 H 1.09002 * 109.47359 * 300.00233 * 9 8 5 32 32 H 1.09001 * 109.47125 * 60.00079 * 9 8 5 33 33 H 0.97005 * 120.00535 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.47737 * 84.29998 * 23 22 18 35 35 H 1.09004 * 109.47487 * 204.29805 * 23 22 18 36 36 H 1.09007 * 109.47153 * 324.29761 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 1 0.5217 2.3935 -0.6598 7 7 2.2675 3.5471 -0.4732 8 6 0.9139 2.7884 1.4213 9 6 0.0440 4.0469 1.4019 10 6 -0.4199 4.3587 2.8013 11 1 -0.1236 3.7230 3.6226 12 6 -1.2227 5.4553 3.0332 13 7 -1.5831 6.2297 2.0333 14 14 -1.7983 5.8413 4.7679 15 1 -1.2592 4.8244 5.7062 16 1 -1.3115 7.1874 5.1631 17 1 -3.2825 5.8187 4.8136 18 6 2.1592 -1.2025 -0.0005 19 7 3.4630 -1.3507 -0.0681 20 7 3.7766 -2.5958 -0.0423 21 7 2.7147 -3.3229 0.0322 22 7 1.6200 -2.4414 0.0623 23 6 0.1995 -2.7899 0.1449 24 1 -0.3633 -0.0926 1.0236 25 1 -0.3633 0.9327 -0.4314 26 1 -0.3634 -0.8400 -0.5919 27 1 1.7675 4.4207 -0.5433 28 1 3.0763 3.6403 0.1230 29 1 0.3323 1.9506 1.8060 30 1 1.7793 2.9548 2.0628 31 1 0.6256 4.8847 1.0172 32 1 -0.8214 3.8805 0.7604 33 1 -2.1482 7.0011 2.1964 34 1 -0.2296 -2.8063 -0.8569 35 1 0.0926 -3.7737 0.6020 36 1 -0.3218 -2.0490 0.7513 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691563560.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:27 Heat of formation + Delta-G solvation = 79.046893 kcal Electronic energy + Delta-G solvation = -20657.363458 eV Core-core repulsion = 17407.414006 eV Total energy + Delta-G solvation = -3249.949452 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.139 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.19237 -41.50456 -37.85494 -37.24268 -35.69940 -34.85959 -32.77934 -31.69808 -29.91480 -28.54300 -27.53037 -26.20247 -24.33641 -23.82272 -22.24214 -20.74195 -19.06770 -18.57343 -18.30795 -18.17643 -17.60291 -16.56148 -16.30215 -15.92993 -15.85513 -15.19089 -15.07065 -14.79854 -14.73827 -14.24417 -14.21494 -13.90082 -13.60155 -13.35373 -12.94113 -12.77008 -12.58187 -12.48730 -12.35683 -12.00846 -11.79002 -11.70443 -11.48918 -11.25338 -10.94374 -10.52873 -10.04018 -9.71055 -8.18945 -6.27762 -0.20596 0.33027 0.95596 1.40187 1.44074 1.53351 1.54546 1.59237 2.41969 2.83015 3.16109 3.33988 3.59044 3.67768 3.85221 3.98443 4.11011 4.17773 4.25266 4.34559 4.43010 4.51209 4.65056 4.69663 4.73880 4.84815 5.09520 5.35063 5.51302 5.58392 5.69680 5.84621 6.07555 6.24397 6.44330 6.71841 6.88126 7.37355 7.41592 8.91608 Molecular weight = 268.14amu Principal moments of inertia in cm(-1) A = 0.027814 B = 0.004284 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.451118 B = 6535.134613 C = 7014.115712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.520 5.520 3 C 0.524 3.476 4 O -0.503 6.503 5 C 0.096 3.904 6 H 0.132 0.868 7 N -0.833 5.833 8 C -0.124 4.124 9 C 0.031 3.969 10 C -0.541 4.541 11 H 0.053 0.947 12 C 0.010 3.990 13 N -0.924 5.924 14 Si 0.951 3.049 15 H -0.268 1.268 16 H -0.285 1.285 17 H -0.277 1.277 18 C 0.465 3.535 19 N -0.361 5.361 20 N -0.057 5.057 21 N -0.090 5.090 22 N -0.382 5.382 23 C 0.058 3.942 24 H 0.100 0.900 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.361 0.639 28 H 0.345 0.655 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.003 0.997 32 H 0.014 0.986 33 H 0.263 0.737 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.122 -15.144 -4.799 16.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.255 5.255 3 C 0.312 3.688 4 O -0.370 6.370 5 C -0.019 4.019 6 H 0.150 0.850 7 N -0.366 5.366 8 C -0.164 4.164 9 C -0.006 4.006 10 C -0.579 4.579 11 H 0.072 0.928 12 C -0.188 4.188 13 N -0.564 5.564 14 Si 0.777 3.223 15 H -0.192 1.192 16 H -0.211 1.211 17 H -0.203 1.203 18 C 0.101 3.899 19 N -0.221 5.221 20 N -0.053 5.053 21 N -0.079 5.079 22 N -0.186 5.186 23 C -0.080 4.080 24 H 0.118 0.882 25 H 0.134 0.866 26 H 0.138 0.862 27 H 0.177 0.823 28 H 0.158 0.842 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.021 0.979 32 H 0.033 0.967 33 H 0.072 0.928 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.370 -16.073 -5.550 17.169 hybrid contribution -1.285 1.251 1.857 2.582 sum -3.656 -14.822 -3.693 15.706 Atomic orbital electron populations 1.23207 0.72984 1.08321 1.06207 1.45261 1.09725 0.99576 1.70968 1.21600 0.88065 0.84875 0.74263 1.90803 1.15292 1.86210 1.44714 1.21474 0.95314 0.87101 0.98016 0.85012 1.58754 1.10997 1.09623 1.57213 1.22212 0.99734 1.00540 0.93921 1.18973 0.94055 0.91856 0.95743 1.21618 1.30462 1.10749 0.95055 0.92824 1.25738 0.96448 0.96190 1.00457 1.70038 1.37114 1.16701 1.32544 0.85605 0.78165 0.77952 0.80548 1.19184 1.21082 1.20269 1.21883 0.88552 0.83600 0.95897 1.75105 1.09504 1.10333 1.27129 1.78008 1.20032 0.96687 1.10576 1.82395 0.88475 1.13347 1.23642 1.51677 1.11227 1.01855 1.53827 1.23191 0.70871 1.06832 1.07148 0.88171 0.86618 0.86242 0.82294 0.84168 0.90503 0.93932 0.97904 0.96725 0.92804 0.86122 0.85864 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 7.86 127.77 1.00 1.37 16 2 N -0.52 -12.23 3.07 -665.60 -2.04 -14.28 16 3 C 0.52 16.07 6.89 87.66 0.60 16.68 16 4 O -0.50 -19.90 14.98 -3.02 -0.05 -19.94 16 5 C 0.10 2.72 2.44 44.17 0.11 2.83 16 6 H 0.13 3.04 6.30 -2.38 -0.02 3.02 16 7 N -0.83 -25.60 8.94 -171.80 -1.54 -27.14 16 8 C -0.12 -4.13 4.71 30.59 0.14 -3.99 16 9 C 0.03 1.33 4.74 29.85 0.14 1.47 16 10 C -0.54 -27.20 9.11 25.60 0.23 -26.97 16 11 H 0.05 2.66 7.74 -2.91 -0.02 2.63 16 12 C 0.01 0.54 5.46 84.65 0.46 1.01 16 13 N -0.92 -50.74 13.29 21.44 0.28 -50.46 16 14 Si 0.95 40.96 29.54 68.60 2.03 42.98 16 15 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 16 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 17 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 18 C 0.47 12.91 8.35 260.47 2.18 15.09 16 19 N -0.36 -13.13 10.42 -58.47 -0.61 -13.74 16 20 N -0.06 -1.96 13.38 37.02 0.50 -1.47 16 21 N -0.09 -2.51 13.93 37.02 0.52 -2.00 16 22 N -0.38 -7.95 4.09 -370.83 -1.52 -9.46 16 23 C 0.06 0.38 9.68 127.77 1.24 1.61 16 24 H 0.10 0.87 7.37 -2.38 -0.02 0.85 16 25 H 0.12 1.24 5.75 -2.39 -0.01 1.23 16 26 H 0.12 0.50 5.33 -2.39 -0.01 0.49 16 27 H 0.36 10.96 7.55 -89.69 -0.68 10.28 16 28 H 0.35 11.18 8.58 -89.69 -0.77 10.41 16 29 H 0.08 2.26 7.11 -2.39 -0.02 2.24 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.00 0.12 6.87 -2.39 -0.02 0.11 16 32 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.26 13.73 8.31 -92.70 -0.77 12.96 16 34 H 0.12 0.16 7.71 -2.39 -0.02 0.14 16 35 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.13 0.28 5.54 -2.38 -0.01 0.27 16 Total: -1.00 -75.45 300.77 3.38 -72.07 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -0.30 Total: 14.33 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 6.11 Total: 9.10 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -4.41 Total: -118.54 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.05 Total: -19.94 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Total: -75.45 3.38 -72.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691563560.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.117 kcal (2) G-P(sol) polarization free energy of solvation -75.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds