Wall clock time and date at job start Mon Mar 30 2020 06:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 119.99738 * 2 1 4 4 H 1.48504 * 109.46984 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47334 * 299.99986 * 3 2 1 6 6 H 1.48505 * 109.47216 * 60.00284 * 3 2 1 7 7 C 1.37872 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99558 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00375 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47057 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47202 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47221 * 305.00357 * 11 10 9 13 13 N 1.46901 * 109.47027 * 64.99765 * 11 10 9 14 14 C 1.50700 * 109.47432 * 184.99824 * 11 10 9 15 15 O 1.21283 * 119.99803 * 259.99855 * 14 11 10 16 16 N 1.34777 * 119.99675 * 80.27730 * 14 11 10 17 17 C 1.46497 * 119.99525 * 179.72583 * 16 14 11 18 18 C 1.50706 * 109.47174 * 179.97438 * 17 16 14 19 19 C 1.34417 * 126.54146 * 264.69041 * 18 17 16 20 20 N 1.34368 * 108.26271 * 179.89249 * 19 18 17 21 21 C 1.31017 * 109.29958 * 0.37682 * 20 19 18 22 22 O 1.35505 * 125.76463 * 179.73427 * 21 20 19 23 23 N 1.35876 * 108.47439 * 359.76714 * 21 20 19 24 24 H 0.96999 * 126.48075 * 180.02562 * 23 21 20 25 25 H 0.96999 * 119.99800 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47169 * 60.00188 * 9 7 2 27 27 H 1.08999 * 109.47275 * 300.00248 * 9 7 2 28 28 H 1.08993 * 109.47652 * 60.00299 * 10 9 7 29 29 H 1.09001 * 109.47356 * 299.99400 * 10 9 7 30 30 H 1.00895 * 110.99940 * 60.00250 * 13 11 10 31 31 H 1.00907 * 111.00198 * 183.95748 * 13 11 10 32 32 H 0.97000 * 119.99894 * 359.71837 * 16 14 11 33 33 H 1.08995 * 109.47421 * 299.99467 * 17 16 14 34 34 H 1.09001 * 109.47621 * 60.00103 * 17 16 14 35 35 H 1.07999 * 125.87096 * 359.97438 * 19 18 17 36 36 H 0.96703 * 114.00128 * 270.04146 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 1 0.7879 -5.0073 0.8404 13 7 0.7290 -5.1181 -1.2567 14 6 2.4549 -6.1298 0.1226 15 8 2.7870 -6.7531 -0.8634 16 7 2.9531 -6.4628 1.3299 17 6 3.8958 -7.5776 1.4510 18 6 4.2982 -7.7406 2.8942 19 6 5.3915 -7.2264 3.4832 20 7 5.3877 -7.5970 4.7748 21 6 4.3303 -8.3338 5.0107 22 8 4.0012 -8.8881 6.2026 23 7 3.6198 -8.4488 3.8582 24 1 2.7907 -8.9377 3.7383 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8720 -3.6043 0.8894 29 1 2.8719 -3.6043 -0.8906 30 1 1.3491 -5.1021 -2.0525 31 1 0.1646 -5.9545 -1.2548 32 1 2.6875 -5.9643 2.1184 33 1 3.4218 -8.4941 1.0999 34 1 4.7807 -7.3723 0.8485 35 1 6.1432 -6.6186 3.0015 36 1 4.3645 -9.7739 6.3381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691592122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:00 Heat of formation + Delta-G solvation = -27.355719 kcal Electronic energy + Delta-G solvation = -19636.669379 eV Core-core repulsion = 16349.813212 eV Total energy + Delta-G solvation = -3286.856167 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.46479 -39.80583 -37.79106 -35.46454 -34.92271 -32.91649 -32.80382 -30.37028 -30.05590 -26.90656 -25.47954 -23.36335 -22.12889 -21.43579 -20.73808 -19.96749 -19.44448 -17.62666 -17.10577 -16.43571 -16.02006 -15.93394 -15.53959 -14.82478 -14.52311 -14.29796 -14.24295 -13.97774 -13.59078 -13.28548 -12.96259 -12.33719 -12.26617 -12.02652 -11.55895 -10.90758 -10.72289 -10.54018 -10.51673 -10.43814 -10.22141 -9.82009 -9.39918 -9.23426 -8.99255 -8.84832 -8.35137 -8.21450 -5.93931 -3.96025 1.29657 2.14359 2.56632 2.67154 3.32639 3.34730 3.42344 3.46383 3.60708 4.28652 4.50562 4.67753 4.81772 4.94290 5.05257 5.12965 5.36418 5.41797 5.48397 5.70227 5.79617 6.10969 6.23395 6.36829 6.42331 6.62957 7.06991 7.23534 7.29622 7.49000 7.52403 7.74544 7.76717 7.95263 8.12195 8.19284 8.48124 9.12156 9.67414 11.17010 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.018986 B = 0.003696 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.419857 B = 7574.431859 C = 8480.647337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.031 3.969 10 C -0.096 4.096 11 C 0.079 3.921 12 H 0.098 0.902 13 N -0.806 5.806 14 C 0.485 3.515 15 O -0.552 6.552 16 N -0.731 5.731 17 C 0.196 3.804 18 C -0.033 4.033 19 C 0.018 3.982 20 N -0.482 5.482 21 C 0.385 3.615 22 O -0.442 6.442 23 N -0.566 5.566 24 H 0.420 0.580 25 H 0.259 0.741 26 H 0.035 0.965 27 H 0.012 0.988 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.348 0.652 31 H 0.333 0.667 32 H 0.405 0.595 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.181 0.819 36 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.385 -20.697 7.483 22.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.037 4.037 12 H 0.115 0.885 13 N -0.334 5.334 14 C 0.271 3.729 15 O -0.430 6.430 16 N -0.385 5.385 17 C 0.071 3.929 18 C -0.147 4.147 19 C -0.131 4.131 20 N -0.211 5.211 21 C 0.083 3.917 22 O -0.243 6.243 23 N -0.183 5.183 24 H 0.259 0.741 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.163 0.837 31 H 0.145 0.855 32 H 0.240 0.760 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.199 0.801 36 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 6.419 -19.635 7.752 22.064 hybrid contribution 0.076 -0.749 -0.170 0.772 sum 6.495 -20.384 7.582 22.698 Atomic orbital electron populations 1.69988 1.05961 1.26311 1.50965 1.24997 0.94812 0.99102 0.95467 0.86591 0.80140 0.84054 0.77520 1.19805 1.21068 1.21103 1.21316 0.92970 0.91287 1.50435 0.92876 1.19021 0.93566 0.89877 0.98182 1.21668 0.98876 0.92056 1.00796 1.21858 0.93471 0.93260 0.95095 0.88460 1.58994 1.26909 1.44240 1.03270 1.22845 0.82095 0.85710 0.82247 1.90657 1.61003 1.54283 1.37036 1.46337 1.46908 1.34523 1.10736 1.19557 0.94646 0.90864 0.87803 1.21087 0.96927 1.04644 0.92059 1.22196 0.98645 1.03110 0.89184 1.70591 1.18364 1.15246 1.16945 1.20340 0.90076 1.00057 0.81199 1.84936 1.75049 1.36724 1.27553 1.43758 1.23419 1.42123 1.08988 0.74112 0.93163 0.94662 0.96921 0.92712 0.92738 0.83740 0.85492 0.75972 0.90826 0.88634 0.80144 0.74050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.03 0.77 4.86 -27.89 -0.14 0.64 16 10 C -0.10 -1.88 4.78 -26.73 -0.13 -2.01 16 11 C 0.08 1.26 3.15 -68.86 -0.22 1.05 16 12 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 13 N -0.81 -13.06 8.44 -5.65 -0.05 -13.10 16 14 C 0.49 7.00 7.07 -10.98 -0.08 6.92 16 15 O -0.55 -9.36 16.25 5.55 0.09 -9.27 16 16 N -0.73 -8.13 5.55 -61.47 -0.34 -8.47 16 17 C 0.20 1.81 6.22 -5.19 -0.03 1.78 16 18 C -0.03 -0.29 6.61 -81.39 -0.54 -0.83 16 19 C 0.02 0.18 11.77 -17.79 -0.21 -0.03 16 20 N -0.48 -5.72 11.28 -14.72 -0.17 -5.89 16 21 C 0.38 3.68 9.49 -89.18 -0.85 2.83 16 22 O -0.44 -3.27 13.64 -18.21 -0.25 -3.51 16 23 N -0.57 -4.29 6.22 -10.26 -0.06 -4.35 16 24 H 0.42 2.10 8.96 -40.82 -0.37 1.74 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.04 0.97 7.75 -51.93 -0.40 0.56 16 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.35 5.72 8.58 -39.29 -0.34 5.39 16 31 H 0.33 4.62 9.06 -39.29 -0.36 4.26 16 32 H 0.41 4.19 8.46 -40.82 -0.35 3.85 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.18 1.54 8.06 -52.49 -0.42 1.11 16 36 H 0.40 0.75 9.06 45.56 0.41 1.16 16 LS Contribution 318.89 15.07 4.81 4.81 Total: -1.00 -35.66 318.89 -6.75 -42.40 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -3.89 Total: 9.93 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -2.60 Total: -3.11 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.12 Total: -57.99 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.16 Total: -12.78 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.66 -6.75 -42.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691592122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.046 kcal (2) G-P(sol) polarization free energy of solvation -35.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds