Wall clock time and date at job start Mon Mar 30 2020 06:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 119.99738 * 2 1 4 4 H 1.48504 * 109.46984 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47334 * 299.99986 * 3 2 1 6 6 H 1.48505 * 109.47216 * 60.00284 * 3 2 1 7 7 C 1.37872 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99558 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00375 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47057 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47202 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47221 * 305.00357 * 11 10 9 13 13 N 1.46901 * 109.47027 * 64.99765 * 11 10 9 14 14 C 1.50700 * 109.47432 * 184.99824 * 11 10 9 15 15 O 1.21283 * 119.99803 * 259.99855 * 14 11 10 16 16 N 1.34777 * 119.99675 * 80.27730 * 14 11 10 17 17 C 1.46497 * 119.99525 * 179.72583 * 16 14 11 18 18 C 1.50706 * 109.47174 * 179.97438 * 17 16 14 19 19 C 1.34417 * 126.54146 * 264.69041 * 18 17 16 20 20 N 1.34368 * 108.26271 * 179.89249 * 19 18 17 21 21 C 1.31017 * 109.29958 * 0.37682 * 20 19 18 22 22 O 1.35505 * 125.76463 * 179.73427 * 21 20 19 23 23 N 1.35876 * 108.47439 * 359.76714 * 21 20 19 24 24 H 0.96999 * 126.48075 * 180.02562 * 23 21 20 25 25 H 0.96999 * 119.99800 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47169 * 60.00188 * 9 7 2 27 27 H 1.08999 * 109.47275 * 300.00248 * 9 7 2 28 28 H 1.08993 * 109.47652 * 60.00299 * 10 9 7 29 29 H 1.09001 * 109.47356 * 299.99400 * 10 9 7 30 30 H 1.00895 * 110.99940 * 60.00250 * 13 11 10 31 31 H 1.00907 * 111.00198 * 183.95748 * 13 11 10 32 32 H 0.97000 * 119.99894 * 359.71837 * 16 14 11 33 33 H 1.08995 * 109.47421 * 299.99467 * 17 16 14 34 34 H 1.09001 * 109.47621 * 60.00103 * 17 16 14 35 35 H 1.07999 * 125.87096 * 359.97438 * 19 18 17 36 36 H 0.96703 * 114.00128 * 270.04146 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 1 0.7879 -5.0073 0.8404 13 7 0.7290 -5.1181 -1.2567 14 6 2.4549 -6.1298 0.1226 15 8 2.7870 -6.7531 -0.8634 16 7 2.9531 -6.4628 1.3299 17 6 3.8958 -7.5776 1.4510 18 6 4.2982 -7.7406 2.8942 19 6 5.3915 -7.2264 3.4832 20 7 5.3877 -7.5970 4.7748 21 6 4.3303 -8.3338 5.0107 22 8 4.0012 -8.8881 6.2026 23 7 3.6198 -8.4488 3.8582 24 1 2.7907 -8.9377 3.7383 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8720 -3.6043 0.8894 29 1 2.8719 -3.6043 -0.8906 30 1 1.3491 -5.1021 -2.0525 31 1 0.1646 -5.9545 -1.2548 32 1 2.6875 -5.9643 2.1184 33 1 3.4218 -8.4941 1.0999 34 1 4.7807 -7.3723 0.8485 35 1 6.1432 -6.6186 3.0015 36 1 4.3645 -9.7739 6.3381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691592122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:59 Heat of formation + Delta-G solvation = -60.883528 kcal Electronic energy + Delta-G solvation = -19638.123254 eV Core-core repulsion = 16349.813212 eV Total energy + Delta-G solvation = -3288.310042 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.16073 -40.96896 -38.38498 -36.87300 -36.01442 -34.79548 -33.63254 -31.91422 -31.14161 -28.29283 -26.76950 -24.90400 -22.82432 -22.36531 -22.11561 -21.20673 -20.16447 -18.73392 -18.18281 -17.99533 -17.26613 -16.84184 -16.68352 -16.41454 -15.85292 -15.41521 -15.10229 -14.85357 -14.81861 -14.27200 -14.10679 -13.95119 -13.72190 -13.38424 -12.87682 -12.81245 -12.50085 -12.22294 -11.76777 -11.64793 -11.26234 -11.21380 -11.17661 -10.98535 -10.48398 -10.20556 -9.74069 -9.37354 -8.13054 -6.22884 0.61442 1.42435 1.43181 1.48170 1.52928 1.56038 1.83744 2.35976 2.46052 3.00987 3.20301 3.58893 3.62917 3.88368 3.98700 4.13540 4.31494 4.34921 4.41616 4.59610 4.81083 4.96938 5.01151 5.27346 5.29363 5.48121 5.59264 5.86407 5.91048 6.00508 6.12056 6.32036 6.40565 6.55919 6.74028 6.81670 6.96500 7.09671 7.45391 8.98313 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.018986 B = 0.003696 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.419857 B = 7574.431859 C = 8480.647337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.959 3.041 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.083 4.083 11 C 0.085 3.915 12 H 0.108 0.892 13 N -0.820 5.820 14 C 0.494 3.506 15 O -0.576 6.576 16 N -0.717 5.717 17 C 0.201 3.799 18 C -0.025 4.025 19 C 0.003 3.997 20 N -0.523 5.523 21 C 0.387 3.613 22 O -0.449 6.449 23 N -0.553 5.553 24 H 0.434 0.566 25 H 0.261 0.739 26 H 0.006 0.994 27 H -0.008 1.008 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.346 0.654 31 H 0.347 0.653 32 H 0.411 0.589 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.190 0.810 36 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.167 -21.408 8.134 23.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.784 3.216 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.075 0.925 9 C 0.001 3.999 10 C -0.121 4.121 11 C -0.031 4.031 12 H 0.126 0.874 13 N -0.349 5.349 14 C 0.280 3.720 15 O -0.456 6.456 16 N -0.369 5.369 17 C 0.077 3.923 18 C -0.140 4.140 19 C -0.146 4.146 20 N -0.254 5.254 21 C 0.085 3.915 22 O -0.253 6.253 23 N -0.171 5.171 24 H 0.275 0.725 25 H 0.070 0.930 26 H 0.025 0.975 27 H 0.011 0.989 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.160 0.840 31 H 0.160 0.840 32 H 0.247 0.753 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.207 0.793 36 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 7.201 -20.397 8.439 23.219 hybrid contribution -0.188 -0.592 -0.301 0.690 sum 7.013 -20.989 8.138 23.578 Atomic orbital electron populations 1.70114 1.07615 1.27394 1.51958 1.25900 0.95700 1.03031 0.95066 0.85496 0.79145 0.79335 0.77639 1.18731 1.20679 1.20443 1.21784 0.93419 0.92762 1.50038 0.92548 1.18838 0.93940 0.91436 0.95706 1.21391 0.97707 0.92076 1.00923 1.21629 0.93771 0.92176 0.95498 0.87401 1.58958 1.27296 1.45370 1.03280 1.22268 0.81786 0.85186 0.82807 1.90657 1.61776 1.55102 1.38045 1.46206 1.46249 1.34626 1.09837 1.19599 0.94248 0.90389 0.88059 1.20885 0.96681 1.04591 0.91869 1.22450 0.99513 1.03610 0.89036 1.70546 1.20068 1.16820 1.17943 1.20391 0.89686 0.99555 0.81866 1.84890 1.75252 1.38503 1.26634 1.43643 1.23634 1.41634 1.08163 0.72523 0.92986 0.97536 0.98928 0.91469 0.93640 0.84008 0.83961 0.75263 0.89696 0.88465 0.79340 0.71294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.54 -30.64 9.11 25.60 0.23 -30.41 16 8 H 0.06 3.08 7.74 -2.91 -0.02 3.05 16 9 C 0.04 1.95 4.86 29.85 0.15 2.10 16 10 C -0.08 -3.21 4.78 30.59 0.15 -3.06 16 11 C 0.09 2.64 3.15 44.17 0.14 2.78 16 12 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 13 N -0.82 -26.24 8.44 -171.79 -1.45 -27.69 16 14 C 0.49 13.42 7.07 87.66 0.62 14.04 16 15 O -0.58 -18.63 16.25 -3.04 -0.05 -18.68 16 16 N -0.72 -14.38 5.55 -466.79 -2.59 -16.97 16 17 C 0.20 3.25 6.22 85.64 0.53 3.78 16 18 C -0.03 -0.39 6.61 40.79 0.27 -0.13 16 19 C 0.00 0.05 11.77 83.43 0.98 1.03 16 20 N -0.52 -11.87 11.28 -314.08 -3.54 -15.42 16 21 C 0.39 6.75 9.49 179.84 1.71 8.46 16 22 O -0.45 -5.79 13.64 -88.06 -1.20 -6.99 16 23 N -0.55 -7.19 6.22 -297.42 -1.85 -9.04 16 24 H 0.43 3.22 8.96 -92.71 -0.83 2.39 16 25 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 26 H 0.01 0.35 7.75 -2.39 -0.02 0.33 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.35 11.32 8.58 -89.70 -0.77 10.55 16 31 H 0.35 9.33 9.06 -89.69 -0.81 8.51 16 32 H 0.41 7.55 8.46 -92.71 -0.78 6.76 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.19 3.03 8.06 -2.91 -0.02 3.01 16 36 H 0.43 0.71 9.06 -74.06 -0.67 0.04 16 Total: -1.00 -76.10 318.89 -5.83 -81.94 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -2.70 Total: 23.61 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 5.24 Total: -0.91 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -9.15 Total: -125.54 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -1.25 Total: -25.66 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -76.10 -5.83 -81.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691592122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.056 kcal (2) G-P(sol) polarization free energy of solvation -76.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds