Wall clock time and date at job start Mon Mar 30 2020 06:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99698 * 2 1 4 4 H 1.48501 * 109.47089 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47261 * 299.99750 * 3 2 1 6 6 H 1.48499 * 109.47152 * 59.99943 * 3 2 1 7 7 C 1.37875 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00489 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99532 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46649 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47043 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.46937 * 54.99834 * 11 10 9 13 13 N 1.46896 * 109.46960 * 295.00043 * 11 10 9 14 14 C 1.50701 * 109.47384 * 174.99893 * 11 10 9 15 15 O 1.21280 * 119.99781 * 99.99519 * 14 11 10 16 16 N 1.34771 * 119.99622 * 280.00195 * 14 11 10 17 17 C 1.46505 * 119.99622 * 179.97438 * 16 14 11 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 16 14 19 19 C 1.34415 * 126.53875 * 264.68626 * 18 17 16 20 20 N 1.34366 * 108.26702 * 179.89770 * 19 18 17 21 21 C 1.31016 * 109.29662 * 0.37509 * 20 19 18 22 22 O 1.35506 * 125.76274 * 179.73644 * 21 20 19 23 23 N 1.35875 * 108.47143 * 359.77058 * 21 20 19 24 24 H 0.97006 * 126.47570 * 180.02562 * 23 21 20 25 25 H 0.97001 * 120.00335 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47114 * 60.00332 * 9 7 2 27 27 H 1.08996 * 109.47467 * 299.99802 * 9 7 2 28 28 H 1.08996 * 109.47568 * 60.00092 * 10 9 7 29 29 H 1.09004 * 109.47286 * 299.99929 * 10 9 7 30 30 H 1.00908 * 110.99936 * 299.99947 * 13 11 10 31 31 H 1.00903 * 111.00724 * 63.95270 * 13 11 10 32 32 H 0.96996 * 120.00772 * 359.97438 * 16 14 11 33 33 H 1.09002 * 109.47068 * 299.99729 * 17 16 14 34 34 H 1.09001 * 109.47372 * 59.99816 * 17 16 14 35 35 H 1.08002 * 125.87122 * 359.97438 * 19 18 17 36 36 H 0.96699 * 114.00140 * 270.04231 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 1 0.7893 -5.0071 -0.8414 13 7 0.7274 -5.1183 1.2556 14 6 2.4552 -6.1298 -0.1214 15 8 2.7860 -6.7531 0.8650 16 7 2.9594 -6.4590 -1.3271 17 6 3.9075 -7.5696 -1.4462 18 6 4.3150 -7.7297 -2.8883 19 6 3.7731 -8.5725 -3.7842 20 7 4.4125 -8.4108 -4.9549 21 6 5.3430 -7.4988 -4.8176 22 8 6.1898 -7.0790 -5.7887 23 7 5.3162 -7.0457 -3.5369 24 1 5.8938 -6.3676 -3.1529 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 2.8714 -3.6039 0.8922 29 1 2.8728 -3.6046 -0.8877 30 1 1.3464 -5.1024 2.0523 31 1 0.0224 -4.4003 1.3310 32 1 2.6947 -5.9607 -2.1161 33 1 4.7891 -7.3612 -0.8401 34 1 3.4361 -8.4886 -1.0981 35 1 2.9622 -9.2605 -3.5959 36 1 7.0137 -7.5829 -5.8371 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691592124.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:03 Heat of formation + Delta-G solvation = -28.887669 kcal Electronic energy + Delta-G solvation = -19670.715266 eV Core-core repulsion = 16383.792669 eV Total energy + Delta-G solvation = -3286.922597 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.42338 -39.64571 -37.74043 -35.67785 -34.85978 -32.89853 -32.84973 -30.29605 -29.91312 -26.99863 -25.47277 -23.57580 -22.08362 -21.39276 -20.80043 -19.96507 -19.40263 -17.60319 -17.24324 -16.30002 -16.12799 -15.86684 -14.99818 -14.83464 -14.50098 -14.26375 -14.16261 -13.93617 -13.39661 -13.36836 -13.05118 -12.67996 -12.22368 -12.17743 -11.72568 -11.13839 -10.98143 -10.70818 -10.48349 -10.41025 -10.04607 -10.01281 -9.39718 -9.26214 -9.14350 -8.71606 -8.48057 -8.22465 -6.12273 -4.15670 1.34390 2.19724 2.59614 2.83932 3.23188 3.31282 3.33696 3.35389 3.65273 4.34437 4.35949 4.72585 4.93933 5.02876 5.14179 5.17466 5.24064 5.42710 5.53943 5.70552 5.75767 6.13584 6.22070 6.32329 6.41997 6.45853 6.81878 7.28487 7.35988 7.47282 7.53919 7.56343 7.62145 7.84449 7.86876 8.26606 8.35171 8.90413 9.49535 10.98634 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.017403 B = 0.003905 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.541094 B = 7168.107279 C = 8378.297927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.137 4.137 11 C 0.075 3.925 12 H 0.098 0.902 13 N -0.830 5.830 14 C 0.528 3.472 15 O -0.537 6.537 16 N -0.735 5.735 17 C 0.199 3.801 18 C -0.031 4.031 19 C 0.015 3.985 20 N -0.484 5.484 21 C 0.385 3.615 22 O -0.442 6.442 23 N -0.564 5.564 24 H 0.422 0.578 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.018 0.982 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.345 0.655 31 H 0.355 0.645 32 H 0.404 0.596 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.181 0.819 36 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.280 -15.304 -6.657 19.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.177 4.177 11 C -0.040 4.040 12 H 0.116 0.884 13 N -0.362 5.362 14 C 0.315 3.685 15 O -0.412 6.412 16 N -0.390 5.390 17 C 0.074 3.926 18 C -0.145 4.145 19 C -0.135 4.135 20 N -0.214 5.214 21 C 0.084 3.916 22 O -0.243 6.243 23 N -0.181 5.181 24 H 0.261 0.739 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.159 0.841 31 H 0.170 0.830 32 H 0.238 0.762 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.198 0.802 36 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 9.589 -16.369 -7.157 20.276 hybrid contribution 1.708 2.749 0.600 3.292 sum 11.297 -13.620 -6.557 18.871 Atomic orbital electron populations 1.69954 1.06015 1.26729 1.50390 1.25012 0.94868 0.99319 0.95091 0.86533 0.80047 0.83704 0.77706 1.19815 1.20916 1.20896 1.21202 0.93005 0.90900 1.51169 0.92731 1.19112 0.93727 0.91093 0.97431 1.22381 0.99888 0.94039 1.01348 1.21477 0.94668 0.92121 0.95766 0.88444 1.58741 1.18417 1.55952 1.03132 1.20936 0.80972 0.84439 0.82185 1.90645 1.60170 1.53404 1.36979 1.46145 1.47150 1.35147 1.10531 1.19531 0.93387 0.91929 0.87737 1.21101 0.96518 1.00394 0.96517 1.22153 1.02143 1.01731 0.87446 1.70575 1.08744 1.16053 1.25982 1.20331 0.95870 0.95257 0.80180 1.84939 1.32240 1.58865 1.48208 1.43788 1.29940 1.34052 1.10320 0.73909 0.92883 0.96284 0.96326 0.92674 0.92719 0.84143 0.82954 0.76150 0.90705 0.88592 0.80234 0.74052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.56 4.74 -27.88 -0.13 0.43 16 10 C -0.14 -2.59 4.78 -26.73 -0.13 -2.72 16 11 C 0.07 1.22 3.21 -68.86 -0.22 1.00 16 12 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 13 N -0.83 -13.86 8.94 -5.65 -0.05 -13.91 16 14 C 0.53 8.10 7.08 -10.99 -0.08 8.03 16 15 O -0.54 -9.75 16.25 5.56 0.09 -9.66 16 16 N -0.74 -8.57 5.55 -61.47 -0.34 -8.91 16 17 C 0.20 1.91 6.22 -5.19 -0.03 1.88 16 18 C -0.03 -0.28 6.61 -81.39 -0.54 -0.82 16 19 C 0.01 0.15 11.77 -17.79 -0.21 -0.06 16 20 N -0.48 -5.72 11.28 -14.72 -0.17 -5.88 16 21 C 0.39 3.84 9.49 -89.18 -0.85 2.99 16 22 O -0.44 -3.52 13.64 -18.21 -0.25 -3.77 16 23 N -0.56 -4.69 6.22 -10.26 -0.06 -4.75 16 24 H 0.42 2.63 8.96 -40.82 -0.37 2.26 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.35 5.82 8.58 -39.29 -0.34 5.48 16 31 H 0.35 5.97 7.55 -39.29 -0.30 5.68 16 32 H 0.40 4.33 8.46 -40.82 -0.35 3.99 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.40 0.98 9.06 45.56 0.41 1.39 16 LS Contribution 316.94 15.07 4.78 4.78 Total: -1.00 -34.23 316.94 -6.67 -40.90 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -3.79 Total: 12.49 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -2.60 Total: -2.27 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.11 Total: -58.53 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.16 Total: -13.43 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.23 -6.67 -40.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691592124.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.012 kcal (2) G-P(sol) polarization free energy of solvation -34.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds