Wall clock time and date at job start Mon Mar 30 2020 06:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99698 * 2 1 4 4 H 1.48501 * 109.47089 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47261 * 299.99750 * 3 2 1 6 6 H 1.48499 * 109.47152 * 59.99943 * 3 2 1 7 7 C 1.37875 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00489 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99532 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46649 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47043 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.46937 * 54.99834 * 11 10 9 13 13 N 1.46896 * 109.46960 * 295.00043 * 11 10 9 14 14 C 1.50701 * 109.47384 * 174.99893 * 11 10 9 15 15 O 1.21280 * 119.99781 * 99.99519 * 14 11 10 16 16 N 1.34771 * 119.99622 * 280.00195 * 14 11 10 17 17 C 1.46505 * 119.99622 * 179.97438 * 16 14 11 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 16 14 19 19 C 1.34415 * 126.53875 * 264.68626 * 18 17 16 20 20 N 1.34366 * 108.26702 * 179.89770 * 19 18 17 21 21 C 1.31016 * 109.29662 * 0.37509 * 20 19 18 22 22 O 1.35506 * 125.76274 * 179.73644 * 21 20 19 23 23 N 1.35875 * 108.47143 * 359.77058 * 21 20 19 24 24 H 0.97006 * 126.47570 * 180.02562 * 23 21 20 25 25 H 0.97001 * 120.00335 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47114 * 60.00332 * 9 7 2 27 27 H 1.08996 * 109.47467 * 299.99802 * 9 7 2 28 28 H 1.08996 * 109.47568 * 60.00092 * 10 9 7 29 29 H 1.09004 * 109.47286 * 299.99929 * 10 9 7 30 30 H 1.00908 * 110.99936 * 299.99947 * 13 11 10 31 31 H 1.00903 * 111.00724 * 63.95270 * 13 11 10 32 32 H 0.96996 * 120.00772 * 359.97438 * 16 14 11 33 33 H 1.09002 * 109.47068 * 299.99729 * 17 16 14 34 34 H 1.09001 * 109.47372 * 59.99816 * 17 16 14 35 35 H 1.08002 * 125.87122 * 359.97438 * 19 18 17 36 36 H 0.96699 * 114.00140 * 270.04231 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 1 0.7893 -5.0071 -0.8414 13 7 0.7274 -5.1183 1.2556 14 6 2.4552 -6.1298 -0.1214 15 8 2.7860 -6.7531 0.8650 16 7 2.9594 -6.4590 -1.3271 17 6 3.9075 -7.5696 -1.4462 18 6 4.3150 -7.7297 -2.8883 19 6 3.7731 -8.5725 -3.7842 20 7 4.4125 -8.4108 -4.9549 21 6 5.3430 -7.4988 -4.8176 22 8 6.1898 -7.0790 -5.7887 23 7 5.3162 -7.0457 -3.5369 24 1 5.8938 -6.3676 -3.1529 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 2.8714 -3.6039 0.8922 29 1 2.8728 -3.6046 -0.8877 30 1 1.3464 -5.1024 2.0523 31 1 0.0224 -4.4003 1.3310 32 1 2.6947 -5.9607 -2.1161 33 1 4.7891 -7.3612 -0.8401 34 1 3.4361 -8.4886 -1.0981 35 1 2.9622 -9.2605 -3.5959 36 1 7.0137 -7.5829 -5.8371 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691592124.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:03 Heat of formation + Delta-G solvation = -60.827666 kcal Electronic energy + Delta-G solvation = -19672.100289 eV Core-core repulsion = 16383.792669 eV Total energy + Delta-G solvation = -3288.307620 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.14019 -40.86270 -38.37340 -37.14258 -35.94378 -34.83710 -33.60385 -31.68211 -31.15045 -28.34246 -26.76528 -25.08935 -22.81200 -22.40721 -22.09591 -21.18835 -20.14621 -18.91206 -18.18442 -18.04445 -17.13478 -16.66537 -16.53343 -16.03787 -16.01118 -15.50985 -14.98298 -14.85732 -14.75522 -14.59097 -14.13133 -14.01742 -13.71225 -13.41873 -12.95843 -12.85970 -12.68655 -12.50543 -11.81437 -11.73881 -11.29463 -11.22562 -11.16926 -10.81077 -10.57462 -10.16250 -9.65746 -9.42538 -8.22438 -6.32800 0.63487 1.37769 1.39450 1.50695 1.52661 1.61180 1.85354 2.33205 2.39613 3.03039 3.11522 3.62988 3.77175 3.83924 4.01972 4.14634 4.26101 4.34283 4.44391 4.62487 4.67251 4.84734 5.04497 5.09000 5.32939 5.46225 5.50831 5.65500 5.80285 5.91230 6.08402 6.20319 6.46999 6.49647 6.74546 6.83070 6.83378 7.19231 7.36589 8.88509 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.017403 B = 0.003905 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.541094 B = 7168.107279 C = 8378.297927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.120 4.120 11 C 0.079 3.921 12 H 0.108 0.892 13 N -0.830 5.830 14 C 0.532 3.468 15 O -0.565 6.565 16 N -0.719 5.719 17 C 0.203 3.797 18 C -0.027 4.027 19 C 0.006 3.994 20 N -0.521 5.521 21 C 0.385 3.615 22 O -0.450 6.450 23 N -0.555 5.555 24 H 0.432 0.568 25 H 0.264 0.736 26 H 0.000 1.000 27 H 0.003 0.997 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.344 0.656 31 H 0.352 0.648 32 H 0.411 0.589 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.195 0.805 36 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.597 -15.417 -7.180 20.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.160 4.160 11 C -0.036 4.036 12 H 0.125 0.875 13 N -0.361 5.361 14 C 0.319 3.681 15 O -0.444 6.444 16 N -0.373 5.373 17 C 0.079 3.921 18 C -0.142 4.142 19 C -0.142 4.142 20 N -0.252 5.252 21 C 0.083 3.917 22 O -0.254 6.254 23 N -0.173 5.173 24 H 0.273 0.727 25 H 0.073 0.927 26 H 0.019 0.981 27 H 0.021 0.979 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.157 0.843 31 H 0.167 0.833 32 H 0.246 0.754 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.212 0.788 36 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 10.951 -16.494 -7.710 21.247 hybrid contribution 1.327 2.756 0.698 3.137 sum 12.278 -13.738 -7.012 19.715 Atomic orbital electron populations 1.70066 1.07503 1.27694 1.51420 1.25862 0.95710 1.02977 0.94788 0.85499 0.79053 0.79342 0.77758 1.18912 1.20421 1.20548 1.21654 0.93362 0.92458 1.50716 0.92650 1.18986 0.94114 0.92106 0.95712 1.22123 0.98737 0.93718 1.01393 1.21421 0.94842 0.91370 0.95977 0.87463 1.58761 1.18356 1.55651 1.03348 1.20599 0.80740 0.84004 0.82797 1.90640 1.61182 1.54400 1.38142 1.46027 1.46489 1.35220 1.09541 1.19588 0.93029 0.91313 0.88129 1.20919 0.96687 1.00512 0.96053 1.22482 1.02469 1.02156 0.87132 1.70553 1.09982 1.17530 1.27127 1.20411 0.95800 0.94753 0.80695 1.84889 1.33314 1.59505 1.47693 1.43719 1.29761 1.33985 1.09835 0.72707 0.92748 0.98119 0.97866 0.93484 0.91690 0.84251 0.83295 0.75359 0.90233 0.87832 0.78796 0.71351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.97 13.29 21.45 0.28 -53.69 16 2 C 0.01 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.96 42.89 29.54 68.60 2.03 44.92 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.54 -29.38 9.11 25.60 0.23 -29.15 16 8 H 0.06 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.03 1.34 4.74 29.85 0.14 1.49 16 10 C -0.12 -4.45 4.78 30.60 0.15 -4.30 16 11 C 0.08 2.50 3.21 44.17 0.14 2.65 16 12 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 13 N -0.83 -27.36 8.94 -171.80 -1.54 -28.90 16 14 C 0.53 15.51 7.08 87.66 0.62 16.13 16 15 O -0.57 -19.80 16.25 -3.03 -0.05 -19.85 16 16 N -0.72 -15.31 5.55 -466.78 -2.59 -17.90 16 17 C 0.20 3.46 6.22 85.63 0.53 4.00 16 18 C -0.03 -0.43 6.61 40.79 0.27 -0.16 16 19 C 0.01 0.12 11.77 83.43 0.98 1.10 16 20 N -0.52 -11.68 11.28 -314.08 -3.54 -15.22 16 21 C 0.39 7.07 9.49 179.84 1.71 8.78 16 22 O -0.45 -6.39 13.64 -88.07 -1.20 -7.59 16 23 N -0.56 -8.15 6.22 -297.43 -1.85 -10.00 16 24 H 0.43 4.45 8.96 -92.70 -0.83 3.61 16 25 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 26 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 27 H 0.00 0.15 6.87 -2.39 -0.02 0.14 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.34 11.51 8.58 -89.69 -0.77 10.74 16 31 H 0.35 11.91 7.55 -89.69 -0.68 11.24 16 32 H 0.41 7.88 8.46 -92.71 -0.78 7.10 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.20 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.43 1.27 9.06 -74.06 -0.67 0.59 16 Total: -1.00 -71.96 316.94 -5.78 -77.75 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: -2.56 Total: 29.20 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 5.24 Total: 1.27 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -9.23 Total: -125.70 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -1.25 Total: -27.44 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -71.96 -5.78 -77.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691592124.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.920 kcal (2) G-P(sol) polarization free energy of solvation -71.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds