Wall clock time and date at job start Mon Mar 30 2020 06:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.29025 * 126.44306 * 2 1 4 4 N 1.28733 * 108.80880 * 180.25077 * 3 2 1 5 5 N 1.28840 * 109.40224 * 359.74895 * 4 3 2 6 6 C 1.31073 * 107.98547 * 359.97438 * 5 4 3 7 7 C 1.50707 * 126.65514 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.46927 * 90.02864 * 7 6 5 9 9 C 1.34779 * 119.99978 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99890 * 359.97438 * 9 8 7 11 11 C 1.50697 * 119.99775 * 179.97438 * 9 8 7 12 12 H 1.08998 * 109.47793 * 40.00300 * 11 9 8 13 13 N 1.46901 * 109.46912 * 159.99971 * 11 9 8 14 14 C 1.53006 * 109.47301 * 279.99751 * 11 9 8 15 15 C 1.52999 * 109.46997 * 175.00426 * 14 11 9 16 16 C 1.50706 * 109.46573 * 180.02562 * 15 14 11 17 17 H 1.07995 * 120.00167 * 359.72054 * 16 15 14 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47474 * 90.00322 * 20 18 16 22 22 H 1.48507 * 109.46754 * 210.00056 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99887 * 20 18 16 24 24 H 1.09001 * 109.46409 * 270.17515 * 1 2 3 25 25 H 1.09002 * 109.46659 * 30.17120 * 1 2 3 26 26 H 1.08991 * 109.47279 * 150.17608 * 1 2 3 27 27 H 1.08996 * 109.47412 * 330.02738 * 7 6 5 28 28 H 1.09001 * 109.47001 * 210.02211 * 7 6 5 29 29 H 0.97004 * 120.00084 * 359.97438 * 8 7 6 30 30 H 1.00900 * 111.00110 * 60.00140 * 13 11 9 31 31 H 1.00905 * 111.00268 * 183.95255 * 13 11 9 32 32 H 1.09000 * 109.46866 * 55.00213 * 14 11 9 33 33 H 1.09001 * 109.46611 * 295.00330 * 14 11 9 34 34 H 1.09000 * 109.47486 * 60.00167 * 15 14 11 35 35 H 1.09001 * 109.47362 * 299.99445 * 15 14 11 36 36 H 0.96996 * 119.99730 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2314 1.0379 0.0000 4 7 3.4583 0.6480 -0.0053 5 7 3.4980 -0.6398 -0.0035 6 6 2.2645 -1.0828 0.0037 7 6 1.8263 -2.5248 0.0078 8 7 1.6913 -2.9902 1.3903 9 6 1.3068 -4.2576 1.6402 10 8 1.0722 -5.0126 0.7206 11 6 1.1684 -4.7364 3.0624 12 1 0.7206 -3.9492 3.6690 13 7 0.3105 -5.9284 3.0964 14 6 2.5498 -5.0862 3.6195 15 6 2.4248 -5.4529 5.0996 16 6 3.7856 -5.7968 5.6484 17 1 4.6521 -5.7621 5.0047 18 6 3.9235 -6.1609 6.9711 19 7 2.8676 -6.2085 7.7536 20 14 5.6103 -6.5865 7.6516 21 1 6.2552 -5.3578 8.1806 22 1 5.4663 -7.5803 8.7457 23 1 6.4504 -7.1598 6.5695 24 1 -0.3632 0.0031 1.0277 25 1 -0.3633 0.8885 -0.5165 26 1 -0.3633 -0.8915 -0.5110 27 1 2.5696 -3.1319 -0.5089 28 1 0.8666 -2.6143 -0.5010 29 1 1.8785 -2.3862 2.1259 30 1 0.7042 -6.6732 2.5411 31 1 0.1496 -6.2312 4.0454 32 1 3.2127 -4.2276 3.5126 33 1 2.9599 -5.9327 3.0688 34 1 1.7619 -6.3116 5.2065 35 1 2.0147 -4.6064 5.6504 36 1 2.9646 -6.4650 8.6840 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691592511.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:23 Heat of formation + Delta-G solvation = 72.826355 kcal Electronic energy + Delta-G solvation = -19934.677592 eV Core-core repulsion = 16684.458397 eV Total energy + Delta-G solvation = -3250.219195 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.139 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -44.55133 -39.84619 -36.27034 -35.76729 -35.22066 -32.90989 -32.66752 -29.95875 -29.21436 -28.04742 -26.09672 -23.97967 -23.69434 -22.27930 -20.91247 -20.03891 -18.03146 -17.74006 -17.45333 -16.38046 -16.28037 -15.49551 -15.13846 -14.54299 -14.36256 -14.31514 -14.22556 -14.04962 -13.45637 -13.18141 -12.93996 -12.70887 -12.41667 -12.19941 -11.77986 -11.48764 -11.26595 -11.14682 -10.96907 -10.74411 -10.63966 -10.04874 -10.01260 -9.40149 -9.37651 -9.27070 -8.46882 -8.30788 -6.11357 -4.14471 0.74463 1.55403 1.83667 2.68529 3.01866 3.26666 3.33457 3.37080 3.47578 3.76615 4.23466 4.37959 4.40029 4.68814 4.78523 4.98609 5.04784 5.08078 5.20565 5.25173 5.31978 5.45288 5.65211 5.69348 6.06243 6.21467 6.44418 6.81125 7.19443 7.44309 7.47656 7.57297 7.79647 7.85780 8.17168 8.24262 8.27911 8.91489 9.50968 10.99537 Molecular weight = 268.14amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.003893 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.483311 B = 7191.522744 C = 7992.997178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.299 5.299 3 N -0.090 5.090 4 N -0.073 5.073 5 N -0.280 5.280 6 C 0.165 3.835 7 C 0.208 3.792 8 N -0.734 5.734 9 C 0.533 3.467 10 O -0.530 6.530 11 C 0.077 3.923 12 H 0.098 0.902 13 N -0.831 5.831 14 C -0.139 4.139 15 C 0.025 3.975 16 C -0.525 4.525 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.103 0.897 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.095 0.905 29 H 0.406 0.594 30 H 0.347 0.653 31 H 0.356 0.644 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.480 10.410 -14.522 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.102 5.102 3 N -0.075 5.075 4 N -0.067 5.067 5 N -0.130 5.130 6 C -0.113 4.113 7 C 0.081 3.919 8 N -0.390 5.390 9 C 0.320 3.680 10 O -0.405 6.405 11 C -0.038 4.038 12 H 0.115 0.885 13 N -0.363 5.363 14 C -0.179 4.179 15 C -0.012 4.012 16 C -0.563 4.563 17 H 0.074 0.926 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.198 1.198 24 H 0.121 0.879 25 H 0.128 0.872 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.113 0.887 29 H 0.240 0.760 30 H 0.160 0.840 31 H 0.172 0.828 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.299 11.287 -15.374 20.800 hybrid contribution 1.064 -0.823 1.309 1.877 sum -7.235 10.464 -14.065 18.965 Atomic orbital electron populations 1.22517 0.71065 1.06787 1.06271 1.48508 1.10961 1.04205 1.46538 1.78927 0.98032 1.12582 1.18000 1.78703 1.09527 1.03630 1.14803 1.75124 1.17385 1.03518 1.17009 1.26043 0.86973 0.94123 1.04157 1.19540 1.03121 0.82941 0.86300 1.45980 1.71993 1.14140 1.06910 1.20980 0.74536 0.80200 0.92308 1.90664 1.48959 1.54267 1.46611 1.21462 0.95792 0.95772 0.90782 0.88450 1.58763 1.50364 1.08607 1.18581 1.22410 0.93360 1.01265 1.00850 1.19102 0.97576 0.96756 0.87811 1.21181 0.93658 1.46251 0.95208 0.92639 1.25004 0.96773 0.95366 0.97107 1.69943 1.28839 1.48174 1.06296 0.86581 0.84332 0.78298 0.78756 1.20577 1.21140 1.19819 0.87880 0.87197 0.87350 0.87162 0.88711 0.75980 0.84016 0.82812 0.92383 0.92443 0.96356 0.96365 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.25 11.25 59.85 0.67 0.92 16 2 N -0.30 -2.55 3.75 -65.02 -0.24 -2.80 16 3 N -0.09 -1.05 13.29 60.35 0.80 -0.25 16 4 N -0.07 -1.03 13.43 60.35 0.81 -0.22 16 5 N -0.28 -3.80 12.36 32.70 0.40 -3.39 16 6 C 0.17 1.67 7.50 -155.43 -1.17 0.50 16 7 C 0.21 1.88 6.01 -5.19 -0.03 1.85 16 8 N -0.73 -7.89 5.55 -61.47 -0.34 -8.23 16 9 C 0.53 7.52 7.08 -10.99 -0.08 7.44 16 10 O -0.53 -8.89 16.25 5.56 0.09 -8.80 16 11 C 0.08 1.18 3.21 -68.86 -0.22 0.96 16 12 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 13 N -0.83 -12.94 8.94 -5.65 -0.05 -13.00 16 14 C -0.14 -2.59 4.78 -26.73 -0.13 -2.72 16 15 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 16 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -25.73 13.29 55.43 0.74 -25.00 16 20 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.11 0.15 7.14 -51.93 -0.37 -0.22 16 27 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.09 0.64 7.16 -51.93 -0.37 0.27 16 29 H 0.41 4.02 8.46 -40.82 -0.35 3.67 16 30 H 0.35 5.51 8.58 -39.29 -0.34 5.17 16 31 H 0.36 5.65 7.55 -39.29 -0.30 5.36 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 LS Contribution 315.65 15.07 4.76 4.76 Total: -1.00 -33.92 315.65 -4.13 -38.05 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.58 Total: 6.27 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.49 Total: -3.59 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 2.12 Total: -52.87 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.92 -4.13 -38.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691592511.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.873 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds