Wall clock time and date at job start Mon Mar 30 2020 06:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.29025 * 126.44306 * 2 1 4 4 N 1.28733 * 108.80880 * 180.25077 * 3 2 1 5 5 N 1.28840 * 109.40224 * 359.74895 * 4 3 2 6 6 C 1.31073 * 107.98547 * 359.97438 * 5 4 3 7 7 C 1.50707 * 126.65514 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.46927 * 90.02864 * 7 6 5 9 9 C 1.34779 * 119.99978 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99890 * 359.97438 * 9 8 7 11 11 C 1.50697 * 119.99775 * 179.97438 * 9 8 7 12 12 H 1.08998 * 109.47793 * 40.00300 * 11 9 8 13 13 N 1.46901 * 109.46912 * 159.99971 * 11 9 8 14 14 C 1.53006 * 109.47301 * 279.99751 * 11 9 8 15 15 C 1.52999 * 109.46997 * 175.00426 * 14 11 9 16 16 C 1.50706 * 109.46573 * 180.02562 * 15 14 11 17 17 H 1.07995 * 120.00167 * 359.72054 * 16 15 14 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47474 * 90.00322 * 20 18 16 22 22 H 1.48507 * 109.46754 * 210.00056 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99887 * 20 18 16 24 24 H 1.09001 * 109.46409 * 270.17515 * 1 2 3 25 25 H 1.09002 * 109.46659 * 30.17120 * 1 2 3 26 26 H 1.08991 * 109.47279 * 150.17608 * 1 2 3 27 27 H 1.08996 * 109.47412 * 330.02738 * 7 6 5 28 28 H 1.09001 * 109.47001 * 210.02211 * 7 6 5 29 29 H 0.97004 * 120.00084 * 359.97438 * 8 7 6 30 30 H 1.00900 * 111.00110 * 60.00140 * 13 11 9 31 31 H 1.00905 * 111.00268 * 183.95255 * 13 11 9 32 32 H 1.09000 * 109.46866 * 55.00213 * 14 11 9 33 33 H 1.09001 * 109.46611 * 295.00330 * 14 11 9 34 34 H 1.09000 * 109.47486 * 60.00167 * 15 14 11 35 35 H 1.09001 * 109.47362 * 299.99445 * 15 14 11 36 36 H 0.96996 * 119.99730 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2314 1.0379 0.0000 4 7 3.4583 0.6480 -0.0053 5 7 3.4980 -0.6398 -0.0035 6 6 2.2645 -1.0828 0.0037 7 6 1.8263 -2.5248 0.0078 8 7 1.6913 -2.9902 1.3903 9 6 1.3068 -4.2576 1.6402 10 8 1.0722 -5.0126 0.7206 11 6 1.1684 -4.7364 3.0624 12 1 0.7206 -3.9492 3.6690 13 7 0.3105 -5.9284 3.0964 14 6 2.5498 -5.0862 3.6195 15 6 2.4248 -5.4529 5.0996 16 6 3.7856 -5.7968 5.6484 17 1 4.6521 -5.7621 5.0047 18 6 3.9235 -6.1609 6.9711 19 7 2.8676 -6.2085 7.7536 20 14 5.6103 -6.5865 7.6516 21 1 6.2552 -5.3578 8.1806 22 1 5.4663 -7.5803 8.7457 23 1 6.4504 -7.1598 6.5695 24 1 -0.3632 0.0031 1.0277 25 1 -0.3633 0.8885 -0.5165 26 1 -0.3633 -0.8915 -0.5110 27 1 2.5696 -3.1319 -0.5089 28 1 0.8666 -2.6143 -0.5010 29 1 1.8785 -2.3862 2.1259 30 1 0.7042 -6.6732 2.5411 31 1 0.1496 -6.2312 4.0454 32 1 3.2127 -4.2276 3.5126 33 1 2.9599 -5.9327 3.0688 34 1 1.7619 -6.3116 5.2065 35 1 2.0147 -4.6064 5.6504 36 1 2.9646 -6.4650 8.6840 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691592511.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:22 Heat of formation + Delta-G solvation = 44.798135 kcal Electronic energy + Delta-G solvation = -19935.892987 eV Core-core repulsion = 16684.458397 eV Total energy + Delta-G solvation = -3251.434590 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.139 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.37762 -40.97898 -37.29974 -36.84240 -36.25480 -34.83192 -33.58631 -31.66482 -29.87878 -28.93463 -27.56479 -25.45546 -24.61082 -23.13546 -22.39376 -21.27200 -19.09241 -18.55307 -18.43930 -18.07156 -17.34310 -16.65715 -16.34520 -16.14889 -15.60360 -15.28962 -15.09224 -14.69716 -14.65328 -14.57855 -14.08034 -13.74053 -13.47550 -13.40164 -13.21030 -12.93093 -12.68157 -12.53066 -12.35162 -11.98262 -11.79989 -11.75287 -11.45877 -11.29675 -10.76213 -10.55780 -10.32530 -9.63128 -8.21935 -6.31530 -0.03395 0.90178 0.97907 1.39265 1.40234 1.50228 1.55094 2.07961 2.39868 2.71341 3.11980 3.12192 3.66999 3.78043 3.80827 4.12760 4.14137 4.20356 4.26806 4.36722 4.43307 4.58538 4.67569 4.67961 4.85347 5.04877 5.09725 5.14634 5.47819 5.67011 5.81521 6.06095 6.22012 6.34169 6.50328 6.84265 7.09344 7.37718 7.38250 8.88647 Molecular weight = 268.14amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.003893 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.483311 B = 7191.522744 C = 7992.997178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.282 5.282 3 N -0.096 5.096 4 N -0.109 5.109 5 N -0.314 5.314 6 C 0.172 3.828 7 C 0.212 3.788 8 N -0.720 5.720 9 C 0.540 3.460 10 O -0.556 6.556 11 C 0.083 3.917 12 H 0.113 0.887 13 N -0.827 5.827 14 C -0.124 4.124 15 C 0.030 3.970 16 C -0.546 4.546 17 H 0.053 0.947 18 C 0.008 3.992 19 N -0.925 5.925 20 Si 0.955 3.045 21 H -0.274 1.274 22 H -0.281 1.281 23 H -0.268 1.268 24 H 0.119 0.881 25 H 0.127 0.873 26 H 0.134 0.866 27 H 0.105 0.895 28 H 0.128 0.872 29 H 0.412 0.588 30 H 0.345 0.655 31 H 0.353 0.647 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.006 0.994 35 H 0.002 0.998 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.175 10.821 -15.236 20.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.086 5.086 3 N -0.082 5.082 4 N -0.103 5.103 5 N -0.165 5.165 6 C -0.107 4.107 7 C 0.086 3.914 8 N -0.375 5.375 9 C 0.327 3.673 10 O -0.433 6.433 11 C -0.033 4.033 12 H 0.130 0.870 13 N -0.359 5.359 14 C -0.164 4.164 15 C -0.008 4.008 16 C -0.584 4.584 17 H 0.071 0.929 18 C -0.191 4.191 19 N -0.565 5.565 20 Si 0.780 3.220 21 H -0.200 1.200 22 H -0.207 1.207 23 H -0.193 1.193 24 H 0.137 0.863 25 H 0.146 0.854 26 H 0.152 0.848 27 H 0.123 0.877 28 H 0.145 0.855 29 H 0.247 0.753 30 H 0.158 0.842 31 H 0.168 0.832 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.024 0.976 35 H 0.020 0.980 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.005 11.735 -16.099 21.863 hybrid contribution 1.181 -0.921 1.519 2.133 sum -7.824 10.814 -14.580 19.767 Atomic orbital electron populations 1.23105 0.67895 1.09029 1.08010 1.48847 1.12439 1.02969 1.44322 1.78835 0.97869 1.13599 1.17931 1.78678 1.10773 1.04107 1.16732 1.75026 1.19581 1.03650 1.18271 1.26022 0.86388 0.94641 1.03619 1.19694 1.04656 0.81946 0.85141 1.45789 1.70466 1.13092 1.08124 1.20546 0.74674 0.80904 0.91168 1.90664 1.50433 1.55211 1.46943 1.21387 0.93631 0.96159 0.92103 0.86965 1.58789 1.50103 1.08726 1.18261 1.22162 0.95736 1.00948 0.97575 1.18973 0.95596 0.95499 0.90695 1.21645 0.95130 1.46007 0.95603 0.92899 1.25811 1.00325 0.95375 0.97590 1.70044 1.30766 1.49118 1.06612 0.85598 0.80069 0.78193 0.78117 1.19964 1.20694 1.19275 0.86273 0.85432 0.84811 0.87672 0.85474 0.75272 0.84204 0.83189 0.91954 0.93459 0.97611 0.97977 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.18 11.25 127.77 1.44 1.62 16 2 N -0.28 -4.19 3.75 -359.64 -1.35 -5.54 16 3 N -0.10 -2.14 13.29 37.02 0.49 -1.65 16 4 N -0.11 -3.07 13.43 37.01 0.50 -2.58 16 5 N -0.31 -8.35 12.36 -50.45 -0.62 -8.97 16 6 C 0.17 3.15 7.50 138.14 1.04 4.19 16 7 C 0.21 3.27 6.01 85.64 0.51 3.79 16 8 N -0.72 -13.71 5.55 -466.79 -2.59 -16.30 16 9 C 0.54 14.14 7.08 87.66 0.62 14.76 16 10 O -0.56 -17.49 16.25 -3.03 -0.05 -17.54 16 11 C 0.08 2.40 3.21 44.17 0.14 2.55 16 12 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 13 N -0.83 -24.99 8.94 -171.80 -1.54 -26.52 16 14 C -0.12 -4.55 4.78 30.60 0.15 -4.40 16 15 C 0.03 1.40 4.74 29.85 0.14 1.54 16 16 C -0.55 -29.63 9.11 25.60 0.23 -29.40 16 17 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 18 C 0.01 0.42 5.46 84.66 0.46 0.88 16 19 N -0.93 -53.57 13.29 21.45 0.28 -53.29 16 20 Si 0.95 43.32 29.54 68.60 2.03 45.35 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 25 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 26 H 0.13 -0.22 7.14 -2.39 -0.02 -0.23 16 27 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.13 1.22 7.16 -2.39 -0.02 1.20 16 29 H 0.41 7.17 8.46 -92.71 -0.78 6.39 16 30 H 0.34 10.71 8.58 -89.69 -0.77 9.94 16 31 H 0.35 11.07 7.55 -89.69 -0.68 10.40 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.01 0.28 6.87 -2.39 -0.02 0.26 16 35 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -73.32 315.65 0.80 -72.52 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -1.09 Total: 19.00 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 4.73 Total: -4.48 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -4.82 Total: -114.85 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.05 Total: -17.54 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -73.32 0.80 -72.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691592511.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.319 kcal (2) G-P(sol) polarization free energy of solvation -73.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds