Wall clock time and date at job start Mon Mar 30 2020 06:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47069 * 304.99600 * 11 10 9 13 13 N 1.46898 * 109.47357 * 64.99939 * 11 10 9 14 14 C 1.50703 * 109.46801 * 184.99876 * 11 10 9 15 15 O 1.21275 * 120.00353 * 259.99446 * 14 11 10 16 16 N 1.34781 * 119.99971 * 80.00207 * 14 11 10 17 17 C 1.46497 * 120.00245 * 179.97438 * 16 14 11 18 18 C 1.52995 * 109.47234 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.46959 * 180.02562 * 18 17 16 20 20 N 1.33315 * 126.54868 * 269.68702 * 19 18 17 21 21 N 1.29001 * 107.35686 * 179.83656 * 20 19 18 22 22 N 1.28780 * 108.71895 * 0.43198 * 21 20 19 23 23 H 0.97006 * 125.44553 * 179.72397 * 22 21 20 24 24 N 1.28879 * 109.10837 * 359.72523 * 22 21 20 25 25 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 27 27 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 30 30 H 1.00901 * 110.99892 * 296.04699 * 13 11 10 31 31 H 1.00899 * 111.00057 * 60.00247 * 13 11 10 32 32 H 0.97000 * 119.99714 * 359.97438 * 16 14 11 33 33 H 1.09004 * 109.46914 * 300.00062 * 17 16 14 34 34 H 1.09009 * 109.46627 * 59.99476 * 17 16 14 35 35 H 1.09004 * 109.47555 * 300.00078 * 18 17 16 36 36 H 1.08999 * 109.47409 * 60.00423 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 1 0.7877 -5.0072 0.8415 13 7 0.7287 -5.1181 -1.2556 14 6 2.4546 -6.1299 0.1237 15 8 2.7867 -6.7532 -0.8622 16 7 2.9571 -6.4594 1.3302 17 6 3.9040 -7.5706 1.4507 18 6 4.3168 -7.7325 2.9150 19 6 5.2914 -8.8753 3.0388 20 7 4.9906 -10.1543 3.2644 21 7 6.1007 -10.8106 3.2975 22 7 7.0733 -9.9874 3.1107 23 1 8.0141 -10.2230 3.0930 24 7 6.5967 -8.8007 2.9508 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5566 0.8902 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 0.0240 -4.4000 -1.3319 31 1 1.3488 -5.1023 -2.0514 32 1 2.6917 -5.9607 2.1187 33 1 3.4323 -8.4894 1.1021 34 1 4.7866 -7.3631 0.8454 35 1 4.7887 -6.8137 3.2632 36 1 3.4345 -7.9398 3.5204 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691593222.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:33 Heat of formation + Delta-G solvation = 67.442257 kcal Electronic energy + Delta-G solvation = -19413.864764 eV Core-core repulsion = 16163.412097 eV Total energy + Delta-G solvation = -3250.452667 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.139 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.83360 -39.63584 -36.24632 -35.34615 -34.51391 -33.64326 -32.84863 -30.49584 -29.87584 -26.73940 -24.99617 -24.76361 -23.33698 -22.00518 -20.75219 -19.88106 -19.41765 -17.53308 -17.31237 -16.29248 -16.05664 -15.61002 -14.93841 -14.63010 -14.47629 -14.27256 -13.88466 -13.75403 -13.05306 -12.95658 -12.62411 -12.53581 -12.16982 -11.81585 -11.64135 -11.60839 -11.35009 -11.09349 -10.92560 -10.69834 -10.68580 -9.99333 -9.92863 -9.30050 -9.21546 -9.03629 -8.44527 -8.18266 -6.09174 -4.12278 0.77401 1.69122 1.95109 2.93115 3.08655 3.26766 3.33591 3.36389 3.69568 3.92272 4.38896 4.55185 4.85072 4.91277 5.08519 5.19274 5.21989 5.27208 5.35103 5.57767 5.64673 5.73792 5.76993 6.05419 6.28447 6.44071 6.52105 6.87283 7.42316 7.51468 7.60742 7.68630 7.86098 7.88020 7.91555 8.30576 8.44961 8.93848 9.52712 11.01738 Molecular weight = 268.14amu Principal moments of inertia in cm(-1) A = 0.026990 B = 0.003076 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.181904 B = 9099.671745 C = 9804.729435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.138 4.138 11 C 0.075 3.925 12 H 0.098 0.902 13 N -0.831 5.831 14 C 0.527 3.473 15 O -0.537 6.537 16 N -0.734 5.734 17 C 0.128 3.872 18 C -0.037 4.037 19 C 0.181 3.819 20 N -0.271 5.271 21 N -0.052 5.052 22 N -0.230 5.230 23 H 0.475 0.525 24 N -0.294 5.294 25 H 0.262 0.738 26 H 0.018 0.982 27 H 0.019 0.981 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.355 0.645 31 H 0.345 0.655 32 H 0.404 0.596 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.002 -16.682 7.997 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.040 4.040 12 H 0.116 0.884 13 N -0.363 5.363 14 C 0.314 3.686 15 O -0.412 6.412 16 N -0.388 5.388 17 C 0.003 3.997 18 C -0.077 4.077 19 C -0.102 4.102 20 N -0.145 5.145 21 N -0.047 5.047 22 N -0.076 5.076 23 H 0.329 0.671 24 N -0.146 5.146 25 H 0.071 0.929 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.170 0.830 31 H 0.159 0.841 32 H 0.238 0.762 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.989 -18.341 7.642 22.706 hybrid contribution 1.315 2.451 0.162 2.786 sum 12.304 -15.890 7.804 21.558 Atomic orbital electron populations 1.69951 1.06018 1.26788 1.50449 1.25014 0.94867 0.99305 0.95139 0.86586 0.79833 0.83374 0.78172 1.20639 1.21159 1.19874 1.21185 0.93028 0.90910 1.51098 0.92712 1.19105 0.93730 0.91098 0.97394 1.22385 0.99872 0.93936 1.01535 1.21477 0.94658 0.92171 0.95693 0.88408 1.58739 1.18481 1.55912 1.03197 1.20910 0.81005 0.84426 0.82272 1.90642 1.60085 1.53389 1.37127 1.45884 1.47304 1.35149 1.10511 1.21118 0.93603 0.90932 0.94066 1.20146 0.96165 0.92978 0.98455 1.25394 0.89428 0.94410 1.01005 1.75925 1.17471 1.03607 1.17450 1.78981 0.90991 1.20074 1.14689 1.47816 1.12705 1.02214 1.44865 0.67119 1.74761 1.12358 1.06229 1.21240 0.92873 0.96413 0.96258 0.92443 0.92701 0.83007 0.84144 0.76160 0.90934 0.91206 0.87677 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.57 4.74 -27.89 -0.13 0.43 16 10 C -0.14 -2.61 4.78 -26.73 -0.13 -2.74 16 11 C 0.08 1.24 3.21 -68.86 -0.22 1.02 16 12 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 13 N -0.83 -14.19 8.94 -5.65 -0.05 -14.24 16 14 C 0.53 8.46 7.08 -10.98 -0.08 8.38 16 15 O -0.54 -10.45 16.25 5.56 0.09 -10.36 16 16 N -0.73 -8.67 5.56 -60.29 -0.33 -9.01 16 17 C 0.13 1.37 5.66 -4.05 -0.02 1.35 16 18 C -0.04 -0.29 5.96 -27.88 -0.17 -0.45 16 19 C 0.18 1.76 7.62 -156.63 -1.19 0.56 16 20 N -0.27 -2.99 12.50 32.45 0.41 -2.58 16 21 N -0.05 -0.49 13.48 60.35 0.81 0.32 16 22 N -0.23 -1.56 7.91 60.34 0.48 -1.09 16 23 H 0.47 0.99 8.96 -340.53 -3.05 -2.07 16 24 N -0.29 -2.66 12.36 32.47 0.40 -2.26 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.35 6.05 7.55 -39.29 -0.30 5.75 16 31 H 0.35 6.00 8.58 -39.29 -0.34 5.67 16 32 H 0.40 3.69 8.47 -40.82 -0.35 3.34 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 316.37 15.07 4.77 4.77 Total: -1.00 -34.48 316.37 -7.38 -41.86 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.31 Total: 6.04 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.35 Total: -4.43 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 2.45 Total: -53.93 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.48 -7.38 -41.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691593222.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.300 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds