Wall clock time and date at job start Mon Mar 30 2020 06:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47069 * 304.99600 * 11 10 9 13 13 N 1.46898 * 109.47357 * 64.99939 * 11 10 9 14 14 C 1.50703 * 109.46801 * 184.99876 * 11 10 9 15 15 O 1.21275 * 120.00353 * 259.99446 * 14 11 10 16 16 N 1.34781 * 119.99971 * 80.00207 * 14 11 10 17 17 C 1.46497 * 120.00245 * 179.97438 * 16 14 11 18 18 C 1.52995 * 109.47234 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.46959 * 180.02562 * 18 17 16 20 20 N 1.33315 * 126.54868 * 269.68702 * 19 18 17 21 21 N 1.29001 * 107.35686 * 179.83656 * 20 19 18 22 22 N 1.28780 * 108.71895 * 0.43198 * 21 20 19 23 23 H 0.97006 * 125.44553 * 179.72397 * 22 21 20 24 24 N 1.28879 * 109.10837 * 359.72523 * 22 21 20 25 25 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 27 27 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 30 30 H 1.00901 * 110.99892 * 296.04699 * 13 11 10 31 31 H 1.00899 * 111.00057 * 60.00247 * 13 11 10 32 32 H 0.97000 * 119.99714 * 359.97438 * 16 14 11 33 33 H 1.09004 * 109.46914 * 300.00062 * 17 16 14 34 34 H 1.09009 * 109.46627 * 59.99476 * 17 16 14 35 35 H 1.09004 * 109.47555 * 300.00078 * 18 17 16 36 36 H 1.08999 * 109.47409 * 60.00423 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 1 0.7877 -5.0072 0.8415 13 7 0.7287 -5.1181 -1.2556 14 6 2.4546 -6.1299 0.1237 15 8 2.7867 -6.7532 -0.8622 16 7 2.9571 -6.4594 1.3302 17 6 3.9040 -7.5706 1.4507 18 6 4.3168 -7.7325 2.9150 19 6 5.2914 -8.8753 3.0388 20 7 4.9906 -10.1543 3.2644 21 7 6.1007 -10.8106 3.2975 22 7 7.0733 -9.9874 3.1107 23 1 8.0141 -10.2230 3.0930 24 7 6.5967 -8.8007 2.9508 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5566 0.8902 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 0.0240 -4.4000 -1.3319 31 1 1.3488 -5.1023 -2.0514 32 1 2.6917 -5.9607 2.1187 33 1 3.4323 -8.4894 1.1021 34 1 4.7866 -7.3631 0.8454 35 1 4.7887 -6.8137 3.2632 36 1 3.4345 -7.9398 3.5204 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691593222.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:31 Heat of formation + Delta-G solvation = 38.513437 kcal Electronic energy + Delta-G solvation = -19415.119212 eV Core-core repulsion = 16163.412097 eV Total energy + Delta-G solvation = -3251.707115 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.139 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -45.51232 -40.89890 -37.34867 -36.70558 -35.26885 -34.80435 -34.46974 -31.64682 -31.33990 -28.22250 -26.25832 -25.59274 -24.64948 -22.78029 -22.33394 -21.13533 -20.11939 -18.85838 -18.20310 -18.06076 -17.16394 -16.60476 -16.44713 -16.02213 -15.65699 -15.44301 -15.16563 -14.78561 -14.49904 -14.37383 -13.93650 -13.45911 -13.35747 -13.27409 -12.92647 -12.65559 -12.52456 -12.44523 -12.33712 -12.06335 -11.76254 -11.68773 -11.39123 -11.26570 -10.73355 -10.53203 -10.12195 -9.60298 -8.18857 -6.28769 0.10316 0.95434 1.41701 1.42414 1.46700 1.52794 1.64472 2.11085 2.42289 2.94290 3.15122 3.26470 3.76370 3.80226 3.93764 4.11898 4.20138 4.24262 4.31053 4.51486 4.63565 4.72641 4.88659 4.89894 4.97557 5.14398 5.40489 5.50985 5.62641 5.70636 5.84732 6.11703 6.24778 6.51009 6.56987 6.87435 7.17034 7.26761 7.40338 8.91893 Molecular weight = 268.14amu Principal moments of inertia in cm(-1) A = 0.026990 B = 0.003076 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.181904 B = 9099.671745 C = 9804.729435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.121 4.121 11 C 0.081 3.919 12 H 0.115 0.885 13 N -0.833 5.833 14 C 0.528 3.472 15 O -0.575 6.575 16 N -0.714 5.714 17 C 0.133 3.867 18 C -0.027 4.027 19 C 0.173 3.827 20 N -0.300 5.300 21 N -0.063 5.063 22 N -0.205 5.205 23 H 0.492 0.508 24 N -0.301 5.301 25 H 0.263 0.737 26 H 0.000 1.000 27 H 0.005 0.995 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.353 0.647 31 H 0.343 0.657 32 H 0.420 0.580 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.124 0.876 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.273 -16.576 9.172 22.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.161 4.161 11 C -0.034 4.034 12 H 0.133 0.867 13 N -0.364 5.364 14 C 0.314 3.686 15 O -0.453 6.453 16 N -0.368 5.368 17 C 0.007 3.993 18 C -0.068 4.068 19 C -0.110 4.110 20 N -0.172 5.172 21 N -0.058 5.058 22 N -0.056 5.056 23 H 0.351 0.649 24 N -0.154 5.154 25 H 0.072 0.928 26 H 0.019 0.981 27 H 0.023 0.977 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.168 0.832 31 H 0.156 0.844 32 H 0.257 0.743 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.142 0.858 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.286 -18.254 8.866 23.723 hybrid contribution 0.972 2.370 -0.193 2.569 sum 13.258 -15.884 8.673 22.434 Atomic orbital electron populations 1.70063 1.07487 1.27703 1.51500 1.25857 0.95705 1.02939 0.94858 0.85559 0.78833 0.79077 0.78254 1.20309 1.20781 1.18820 1.21645 0.93406 0.92476 1.50610 0.92615 1.18979 0.94086 0.91987 0.95786 1.22137 0.98763 0.93565 1.01608 1.21437 0.94801 0.91171 0.96027 0.86736 1.58760 1.18469 1.55688 1.03465 1.20744 0.80829 0.84078 0.82939 1.90631 1.61367 1.54689 1.38659 1.45701 1.46301 1.34986 1.09807 1.21090 0.92507 0.89653 0.96007 1.20145 0.96820 0.93354 0.96446 1.25658 0.89860 0.94463 1.01054 1.75907 1.18324 1.04331 1.18645 1.78924 0.91275 1.20377 1.15187 1.47874 1.13410 1.01385 1.42927 0.64930 1.74737 1.12298 1.06968 1.21408 0.92789 0.98124 0.97681 0.90995 0.93912 0.83224 0.84435 0.74264 0.92225 0.92400 0.85756 0.85537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.81 13.29 21.45 0.28 -53.52 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.96 42.76 29.54 68.60 2.03 44.79 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.54 -29.22 9.11 25.60 0.23 -28.99 16 8 H 0.06 2.92 7.74 -2.91 -0.02 2.89 16 9 C 0.03 1.37 4.74 29.85 0.14 1.51 16 10 C -0.12 -4.49 4.78 30.59 0.15 -4.34 16 11 C 0.08 2.58 3.21 44.17 0.14 2.72 16 12 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 13 N -0.83 -28.25 8.94 -171.80 -1.54 -29.78 16 14 C 0.53 16.29 7.08 87.66 0.62 16.91 16 15 O -0.57 -22.12 16.25 -3.01 -0.05 -22.17 16 16 N -0.71 -15.44 5.56 -463.05 -2.57 -18.01 16 17 C 0.13 2.63 5.66 86.38 0.49 3.12 16 18 C -0.03 -0.36 5.96 29.85 0.18 -0.19 16 19 C 0.17 3.07 7.62 138.55 1.06 4.13 16 20 N -0.30 -6.27 12.50 -51.26 -0.64 -6.91 16 21 N -0.06 -1.11 13.48 37.02 0.50 -0.61 16 22 N -0.21 -2.46 7.91 37.00 0.29 -2.17 16 23 H 0.49 1.17 8.96 -347.67 -3.12 -1.95 16 24 N -0.30 -4.92 12.36 -51.20 -0.63 -5.55 16 25 H 0.26 14.46 8.31 -92.71 -0.77 13.68 16 26 H 0.00 0.02 6.87 -2.39 -0.02 0.01 16 27 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.35 12.11 7.55 -89.69 -0.68 11.43 16 31 H 0.34 11.97 8.58 -89.69 -0.77 11.21 16 32 H 0.42 6.45 8.47 -92.71 -0.79 5.67 16 33 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -73.38 316.37 -3.05 -76.44 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: -4.19 Total: 21.90 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 3.47 Total: -4.40 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -4.30 Total: -116.56 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.05 Total: -22.17 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -73.38 -3.05 -76.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691593222.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.950 kcal (2) G-P(sol) polarization free energy of solvation -73.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds