Wall clock time and date at job start Mon Mar 30 2020 06:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29949 * 126.28516 * 2 1 4 4 O 1.21303 * 110.24828 * 179.97438 * 3 2 1 5 5 C 1.33639 * 109.81167 * 0.02562 * 4 3 2 6 6 C 1.50706 * 126.55166 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.46941 * 270.02420 * 6 5 4 8 8 C 1.34774 * 119.99473 * 179.97438 * 7 6 5 9 9 O 1.21280 * 120.00396 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.99578 * 179.97438 * 8 7 6 11 11 H 1.08997 * 109.47036 * 40.01083 * 10 8 7 12 12 N 1.46905 * 109.46975 * 160.00274 * 10 8 7 13 13 C 1.52994 * 109.47657 * 280.00287 * 10 8 7 14 14 C 1.52999 * 109.47386 * 174.99722 * 13 10 8 15 15 C 1.50694 * 109.47256 * 179.97438 * 14 13 10 16 16 H 1.08001 * 120.00317 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00233 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00497 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99724 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47050 * 90.00233 * 19 17 15 21 21 H 1.48503 * 109.47336 * 209.99741 * 19 17 15 22 22 H 1.48499 * 109.47408 * 330.00044 * 19 17 15 23 23 N 1.31134 * 106.89726 * 359.76539 * 5 4 3 24 24 H 1.09001 * 109.46953 * 90.02334 * 1 2 3 25 25 H 1.09000 * 109.47318 * 210.01931 * 1 2 3 26 26 H 1.09000 * 109.47161 * 330.02562 * 1 2 3 27 27 H 1.08997 * 109.46651 * 30.02836 * 6 5 4 28 28 H 1.09002 * 109.46970 * 150.02239 * 6 5 4 29 29 H 0.97002 * 119.99982 * 0.02562 * 7 6 5 30 30 H 1.00903 * 110.99965 * 60.00124 * 12 10 8 31 31 H 1.00901 * 111.00226 * 183.96057 * 12 10 8 32 32 H 1.08993 * 109.47298 * 295.00560 * 13 10 8 33 33 H 1.09002 * 109.46814 * 55.00480 * 13 10 8 34 34 H 1.09002 * 109.47355 * 300.00847 * 14 13 10 35 35 H 1.09003 * 109.47046 * 60.00529 * 14 13 10 36 36 H 0.96999 * 120.00442 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6211 0.0003 6 6 4.7970 -1.4370 0.0003 7 7 5.2079 -1.7006 -1.3810 8 6 6.3224 -2.4174 -1.6272 9 8 6.9848 -2.8446 -0.7054 10 6 6.7448 -2.6892 -3.0481 11 1 6.5799 -1.7976 -3.6530 12 7 8.1703 -3.0429 -3.0760 13 6 5.9207 -3.8481 -3.6125 14 6 6.2605 -4.0428 -5.0915 15 6 5.4492 -5.1846 -5.6472 16 1 4.7599 -5.7180 -5.0095 17 6 5.5870 -5.5487 -6.9699 18 7 4.8787 -6.5449 -7.4551 19 14 6.7799 -4.6267 -8.0729 20 1 8.1135 -5.2775 -8.0129 21 1 6.2803 -4.6500 -9.4712 22 1 6.8945 -3.2199 -7.6116 23 7 2.3030 -1.0840 0.0048 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3634 -0.8898 0.5141 26 1 -0.3633 0.8902 0.5134 27 1 5.5841 -0.8856 0.5146 28 1 4.6205 -2.3822 0.5136 29 1 4.6783 -1.3587 -2.1182 30 1 8.3493 -3.8670 -2.5220 31 1 8.4937 -3.1669 -4.0237 32 1 6.1529 -4.7604 -3.0631 33 1 4.8592 -3.6226 -3.5103 34 1 6.0283 -3.1304 -5.6409 35 1 7.3220 -4.2682 -5.1938 36 1 4.9759 -6.8012 -8.3856 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691593682.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:54 Heat of formation + Delta-G solvation = 23.463016 kcal Electronic energy + Delta-G solvation = -19766.370398 eV Core-core repulsion = 16481.717896 eV Total energy + Delta-G solvation = -3284.652501 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.96919 -39.88067 -36.54922 -35.96249 -35.30807 -33.00115 -32.82300 -30.36615 -29.66032 -28.50688 -26.42844 -24.10775 -23.52094 -21.84299 -20.74207 -20.07382 -18.50392 -18.06585 -17.42606 -16.71022 -16.43494 -15.47407 -15.14373 -14.50516 -14.34649 -14.21100 -14.16793 -13.93916 -13.58764 -13.26321 -13.07476 -12.85313 -12.69236 -12.44367 -11.96374 -11.81815 -11.41008 -11.39834 -11.02218 -10.52023 -10.32801 -10.15035 -9.89990 -9.55801 -9.37478 -9.34213 -8.64316 -8.40369 -6.13639 -4.13530 0.65190 1.79934 2.29888 2.67250 3.06511 3.23385 3.27877 3.31879 3.32604 3.66783 4.35617 4.44464 4.75770 4.88566 4.96983 5.03088 5.03654 5.18016 5.19186 5.26842 5.37989 5.50871 5.52409 5.63910 6.04884 6.08746 6.27041 6.61028 7.04819 7.15392 7.18572 7.40147 7.63372 7.71913 7.77680 8.15627 8.42182 8.90376 9.47364 10.99542 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019832 B = 0.003915 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.492303 B = 7150.426526 C = 8049.584004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.168 3.832 3 N -0.381 5.381 4 O 0.087 5.913 5 C 0.167 3.833 6 C 0.219 3.781 7 N -0.733 5.733 8 C 0.534 3.466 9 O -0.528 6.528 10 C 0.074 3.926 11 H 0.099 0.901 12 N -0.830 5.830 13 C -0.131 4.131 14 C -0.010 4.010 15 C -0.525 4.525 16 H 0.072 0.928 17 C 0.068 3.932 18 N -0.900 5.900 19 Si 0.881 3.119 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.265 1.265 23 N -0.460 5.460 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.407 0.593 30 H 0.349 0.651 31 H 0.352 0.648 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.018 0.982 35 H 0.012 0.988 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.770 13.962 14.059 20.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 N -0.088 5.088 4 O 0.027 5.973 5 C -0.054 4.054 6 C 0.093 3.907 7 N -0.389 5.389 8 C 0.321 3.679 9 O -0.403 6.403 10 C -0.041 4.041 11 H 0.117 0.883 12 N -0.363 5.363 13 C -0.170 4.170 14 C -0.048 4.048 15 C -0.563 4.563 16 H 0.090 0.910 17 C -0.134 4.134 18 N -0.539 5.539 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.190 1.190 23 N -0.195 5.195 24 H 0.110 0.890 25 H 0.112 0.888 26 H 0.106 0.894 27 H 0.125 0.875 28 H 0.133 0.867 29 H 0.242 0.758 30 H 0.163 0.837 31 H 0.167 0.833 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.037 0.963 35 H 0.030 0.970 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.833 14.767 14.934 21.349 hybrid contribution -0.037 -0.394 -1.534 1.584 sum -3.871 14.374 13.400 20.029 Atomic orbital electron populations 1.20185 0.82618 1.04780 1.04663 1.26007 1.00812 0.83268 1.00358 1.74679 0.89344 1.23877 1.20856 1.85331 1.22405 1.24583 1.65003 1.28711 0.96856 0.82344 0.97536 1.19568 0.86726 0.97903 0.86461 1.45916 1.28484 1.57598 1.06943 1.20841 0.78743 0.76130 0.92149 1.90674 1.53026 1.50270 1.46306 1.21500 0.90632 1.00756 0.91233 0.88266 1.58733 1.14161 1.44962 1.18408 1.22222 0.99407 0.96092 0.99313 1.19573 0.96617 0.97701 0.90889 1.21061 1.24102 1.15106 0.96018 0.91036 1.25044 0.95603 0.94746 0.98027 1.69908 1.40916 1.27989 1.15047 0.86773 0.81526 0.80948 0.79976 1.20179 1.21327 1.18978 1.71982 0.99619 1.29398 1.18492 0.88994 0.88796 0.89429 0.87495 0.86679 0.75830 0.83730 0.83266 0.91846 0.91791 0.96340 0.96982 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 36.01 0.38 -0.06 16 2 C 0.17 1.80 8.22 -156.37 -1.28 0.52 16 3 N -0.38 -4.42 12.16 30.90 0.38 -4.04 16 4 O 0.09 0.94 11.31 18.11 0.20 1.14 16 5 C 0.17 1.71 7.88 -13.05 -0.10 1.61 16 6 C 0.22 2.06 6.30 -5.19 -0.03 2.02 16 7 N -0.73 -8.09 5.55 -61.47 -0.34 -8.43 16 8 C 0.53 7.59 7.08 -10.99 -0.08 7.51 16 9 O -0.53 -8.91 16.25 5.56 0.09 -8.82 16 10 C 0.07 1.09 3.21 -68.86 -0.22 0.87 16 11 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 12 N -0.83 -12.42 8.94 -5.65 -0.05 -12.47 16 13 C -0.13 -2.33 4.78 -26.73 -0.13 -2.46 16 14 C -0.01 -0.23 3.81 -27.89 -0.11 -0.33 16 15 C -0.53 -14.33 9.66 -34.44 -0.33 -14.67 16 16 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 17 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 19 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 23 N -0.46 -5.36 11.55 -9.87 -0.11 -5.48 16 24 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.41 4.02 8.46 -40.82 -0.35 3.67 16 30 H 0.35 5.31 8.58 -39.29 -0.34 4.98 16 31 H 0.35 5.13 7.55 -39.29 -0.30 4.83 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 35 H 0.01 0.25 6.29 -51.93 -0.33 -0.07 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 314.36 15.07 4.74 4.74 Total: -1.00 -33.04 314.36 -5.65 -38.69 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -4.65 Total: 8.09 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -2.00 Total: -3.18 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.64 Total: -56.80 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.30 Total: -7.68 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.04 -5.65 -38.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691593682.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.152 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds