Wall clock time and date at job start Mon Mar 30 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29949 * 126.28516 * 2 1 4 4 O 1.21303 * 110.24828 * 179.97438 * 3 2 1 5 5 C 1.33639 * 109.81167 * 0.02562 * 4 3 2 6 6 C 1.50706 * 126.55166 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.46941 * 270.02420 * 6 5 4 8 8 C 1.34774 * 119.99473 * 179.97438 * 7 6 5 9 9 O 1.21280 * 120.00396 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.99578 * 179.97438 * 8 7 6 11 11 H 1.08997 * 109.47036 * 40.01083 * 10 8 7 12 12 N 1.46905 * 109.46975 * 160.00274 * 10 8 7 13 13 C 1.52994 * 109.47657 * 280.00287 * 10 8 7 14 14 C 1.52999 * 109.47386 * 174.99722 * 13 10 8 15 15 C 1.50694 * 109.47256 * 179.97438 * 14 13 10 16 16 H 1.08001 * 120.00317 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00233 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00497 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99724 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47050 * 90.00233 * 19 17 15 21 21 H 1.48503 * 109.47336 * 209.99741 * 19 17 15 22 22 H 1.48499 * 109.47408 * 330.00044 * 19 17 15 23 23 N 1.31134 * 106.89726 * 359.76539 * 5 4 3 24 24 H 1.09001 * 109.46953 * 90.02334 * 1 2 3 25 25 H 1.09000 * 109.47318 * 210.01931 * 1 2 3 26 26 H 1.09000 * 109.47161 * 330.02562 * 1 2 3 27 27 H 1.08997 * 109.46651 * 30.02836 * 6 5 4 28 28 H 1.09002 * 109.46970 * 150.02239 * 6 5 4 29 29 H 0.97002 * 119.99982 * 0.02562 * 7 6 5 30 30 H 1.00903 * 110.99965 * 60.00124 * 12 10 8 31 31 H 1.00901 * 111.00226 * 183.96057 * 12 10 8 32 32 H 1.08993 * 109.47298 * 295.00560 * 13 10 8 33 33 H 1.09002 * 109.46814 * 55.00480 * 13 10 8 34 34 H 1.09002 * 109.47355 * 300.00847 * 14 13 10 35 35 H 1.09003 * 109.47046 * 60.00529 * 14 13 10 36 36 H 0.96999 * 120.00442 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6211 0.0003 6 6 4.7970 -1.4370 0.0003 7 7 5.2079 -1.7006 -1.3810 8 6 6.3224 -2.4174 -1.6272 9 8 6.9848 -2.8446 -0.7054 10 6 6.7448 -2.6892 -3.0481 11 1 6.5799 -1.7976 -3.6530 12 7 8.1703 -3.0429 -3.0760 13 6 5.9207 -3.8481 -3.6125 14 6 6.2605 -4.0428 -5.0915 15 6 5.4492 -5.1846 -5.6472 16 1 4.7599 -5.7180 -5.0095 17 6 5.5870 -5.5487 -6.9699 18 7 4.8787 -6.5449 -7.4551 19 14 6.7799 -4.6267 -8.0729 20 1 8.1135 -5.2775 -8.0129 21 1 6.2803 -4.6500 -9.4712 22 1 6.8945 -3.2199 -7.6116 23 7 2.3030 -1.0840 0.0048 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3634 -0.8898 0.5141 26 1 -0.3633 0.8902 0.5134 27 1 5.5841 -0.8856 0.5146 28 1 4.6205 -2.3822 0.5136 29 1 4.6783 -1.3587 -2.1182 30 1 8.3493 -3.8670 -2.5220 31 1 8.4937 -3.1669 -4.0237 32 1 6.1529 -4.7604 -3.0631 33 1 4.8592 -3.6226 -3.5103 34 1 6.0283 -3.1304 -5.6409 35 1 7.3220 -4.2682 -5.1938 36 1 4.9759 -6.8012 -8.3856 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691593682.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:53 Heat of formation + Delta-G solvation = -4.705405 kcal Electronic energy + Delta-G solvation = -19767.591872 eV Core-core repulsion = 16481.717896 eV Total energy + Delta-G solvation = -3285.873976 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.79225 -41.00355 -37.45372 -37.16253 -36.37374 -34.79998 -33.85047 -32.06026 -30.33410 -29.50202 -27.85995 -25.35742 -24.62437 -22.67799 -22.23360 -21.30819 -19.37711 -19.24026 -18.72621 -18.24788 -17.40624 -16.56441 -16.29258 -16.08276 -15.66849 -15.26868 -15.21862 -14.82265 -14.60218 -14.52440 -14.38456 -14.01920 -13.68113 -13.55120 -13.20590 -13.03377 -12.67788 -12.58963 -12.24227 -12.08162 -11.90378 -11.64862 -11.39461 -11.24298 -10.80470 -10.75496 -10.33772 -9.63992 -8.28859 -6.34442 -0.17016 0.98681 1.39568 1.41033 1.47163 1.52190 1.54948 2.14308 2.37185 2.52360 2.93819 3.06994 3.62747 3.74956 3.80377 4.09663 4.18637 4.21002 4.31890 4.46308 4.55252 4.59956 4.64698 4.75022 4.78484 4.96703 5.05013 5.11243 5.38883 5.49032 5.64070 6.05973 6.26247 6.33803 6.52543 6.74700 6.97205 7.08451 7.30534 8.87973 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019832 B = 0.003915 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.492303 B = 7150.426526 C = 8049.584004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.163 3.837 3 N -0.399 5.399 4 O 0.084 5.916 5 C 0.177 3.823 6 C 0.221 3.779 7 N -0.721 5.721 8 C 0.537 3.463 9 O -0.557 6.557 10 C 0.082 3.918 11 H 0.122 0.878 12 N -0.829 5.829 13 C -0.120 4.120 14 C -0.007 4.007 15 C -0.535 4.535 16 H 0.026 0.974 17 C 0.001 3.999 18 N -0.954 5.954 19 Si 0.954 3.046 20 H -0.267 1.267 21 H -0.290 1.290 22 H -0.236 1.236 23 N -0.484 5.484 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.127 0.873 28 H 0.117 0.883 29 H 0.414 0.586 30 H 0.347 0.653 31 H 0.356 0.644 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.025 0.975 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.896 16.093 14.115 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.109 4.109 3 N -0.107 5.107 4 O 0.026 5.974 5 C -0.045 4.045 6 C 0.096 3.904 7 N -0.377 5.377 8 C 0.324 3.676 9 O -0.433 6.433 10 C -0.033 4.033 11 H 0.140 0.860 12 N -0.361 5.361 13 C -0.160 4.160 14 C -0.045 4.045 15 C -0.573 4.573 16 H 0.044 0.956 17 C -0.195 4.195 18 N -0.594 5.594 19 Si 0.777 3.223 20 H -0.192 1.192 21 H -0.216 1.216 22 H -0.159 1.159 23 N -0.219 5.219 24 H 0.120 0.880 25 H 0.121 0.879 26 H 0.120 0.880 27 H 0.145 0.855 28 H 0.135 0.865 29 H 0.250 0.750 30 H 0.160 0.840 31 H 0.171 0.829 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.969 16.933 15.011 22.822 hybrid contribution -0.413 -1.113 -1.481 1.898 sum -3.382 15.820 13.530 21.090 Atomic orbital electron populations 1.20386 0.80360 1.05959 1.05624 1.26659 1.02212 0.82734 0.99297 1.74676 0.89641 1.24446 1.21947 1.85310 1.22297 1.24678 1.65112 1.28759 0.96766 0.82234 0.96706 1.19696 0.86938 0.98216 0.85517 1.45770 1.27430 1.56397 1.08072 1.20640 0.79193 0.76258 0.91487 1.90670 1.54166 1.51635 1.46864 1.21427 0.89899 1.00034 0.91983 0.86049 1.58759 1.13965 1.44838 1.18572 1.22038 1.00039 0.96968 0.96969 1.19511 0.96221 0.95700 0.93020 1.21465 1.23733 1.16318 0.95785 0.95575 1.26092 0.97750 0.95721 0.99952 1.70084 1.43393 1.30348 1.15624 0.85609 0.78720 0.80855 0.77145 1.19193 1.21608 1.15884 1.72008 1.00334 1.30145 1.19417 0.88009 0.87910 0.87958 0.85532 0.86512 0.74966 0.83989 0.82901 0.93587 0.91880 0.95059 0.95628 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.51 71.24 0.75 -0.05 16 2 C 0.16 3.30 8.22 138.47 1.14 4.44 16 3 N -0.40 -8.78 12.16 -60.32 -0.73 -9.51 16 4 O 0.08 1.71 11.31 74.86 0.85 2.56 16 5 C 0.18 3.37 7.88 88.38 0.70 4.07 16 6 C 0.22 3.75 6.30 85.64 0.54 4.29 16 7 N -0.72 -14.45 5.55 -466.78 -2.59 -17.04 16 8 C 0.54 14.22 7.08 87.66 0.62 14.84 16 9 O -0.56 -17.90 16.25 -3.03 -0.05 -17.95 16 10 C 0.08 2.23 3.21 44.17 0.14 2.37 16 11 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 12 N -0.83 -22.88 8.94 -171.80 -1.54 -24.42 16 13 C -0.12 -4.16 4.78 30.59 0.15 -4.01 16 14 C -0.01 -0.29 3.81 29.85 0.11 -0.18 16 15 C -0.54 -29.57 9.66 25.60 0.25 -29.32 16 16 H 0.03 1.62 7.99 -2.91 -0.02 1.60 16 17 C 0.00 0.08 5.47 84.65 0.46 0.54 16 18 N -0.95 -58.99 13.96 21.45 0.30 -58.70 16 19 Si 0.95 41.95 27.47 68.60 1.88 43.84 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.24 -9.19 6.54 99.48 0.65 -8.54 16 23 N -0.48 -10.72 11.55 -303.19 -3.50 -14.22 16 24 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.12 2.03 8.14 -2.39 -0.02 2.02 16 29 H 0.41 7.25 8.46 -92.71 -0.78 6.47 16 30 H 0.35 10.02 8.58 -89.69 -0.77 9.25 16 31 H 0.36 9.32 7.55 -89.69 -0.68 8.64 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.03 1.24 7.20 -2.39 -0.02 1.22 16 35 H 0.03 1.01 6.29 -2.39 -0.02 0.99 16 36 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -71.95 314.36 -1.67 -73.63 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -1.15 Total: 24.83 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 4.85 Total: -3.01 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -8.06 Total: -123.89 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.80 Total: -15.39 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.88 Total: 43.84 kcal Total: -71.95 -1.67 -73.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691593682.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.920 kcal (2) G-P(sol) polarization free energy of solvation -71.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds