Wall clock time and date at job start Mon Mar 30 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46495 * 120.00057 * 2 1 4 4 C 1.50703 * 109.47500 * 270.00272 * 3 2 1 5 5 H 1.08000 * 119.99870 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00214 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00239 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99934 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47192 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46988 * 120.00076 * 8 6 4 11 11 H 1.48505 * 109.46964 * 240.00039 * 8 6 4 12 12 C 1.34776 * 119.99607 * 180.02562 * 2 1 3 13 13 O 1.21593 * 119.99918 * 179.73522 * 12 2 1 14 14 N 1.34781 * 120.00320 * 359.73120 * 12 2 1 15 15 C 1.48140 * 127.83357 * 352.05667 * 14 12 2 16 16 C 1.54384 * 104.61495 * 219.58169 * 15 14 12 17 17 H 1.09001 * 117.04856 * 114.64784 * 16 15 14 18 18 C 1.57125 * 118.20594 * 273.79990 * 16 15 14 19 19 C 1.53004 * 59.65166 * 91.04107 * 18 16 15 20 20 C 1.50690 * 119.54170 * 112.45461 * 19 18 16 21 21 O 1.20833 * 119.99784 * 289.92060 * 20 19 18 22 22 O 1.34225 * 120.00239 * 109.64800 * 20 19 18 23 23 C 1.48144 * 127.83687 * 172.05223 * 14 12 2 24 24 H 1.09000 * 109.46955 * 264.00067 * 1 2 3 25 25 H 1.09002 * 109.47182 * 23.99751 * 1 2 3 26 26 H 1.08994 * 109.47804 * 144.00231 * 1 2 3 27 27 H 1.08996 * 109.47308 * 30.00753 * 3 2 1 28 28 H 1.09008 * 109.47111 * 150.00411 * 3 2 1 29 29 H 0.96997 * 120.00286 * 179.97438 * 7 6 4 30 30 H 1.09000 * 110.41267 * 338.36740 * 15 14 12 31 31 H 1.09000 * 110.40940 * 100.79880 * 15 14 12 32 32 H 1.08997 * 117.14680 * 343.58715 * 18 16 15 33 33 H 1.08998 * 118.27397 * 197.98694 * 18 16 15 34 34 H 0.96708 * 117.00218 * 180.27744 * 22 20 19 35 35 H 1.08996 * 110.41237 * 21.63249 * 23 14 12 36 36 H 1.09007 * 110.40549 * 259.19782 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.5551 3.6171 -0.6731 8 14 3.4375 3.4172 -3.4339 9 1 2.8595 2.4172 -4.3673 10 1 2.8005 4.7383 -3.6664 11 1 4.9000 3.5247 -3.6680 12 6 2.1388 -1.1672 -0.0005 13 8 3.3547 -1.1673 -0.0054 14 7 1.4649 -2.3345 0.0044 15 6 0.0077 -2.5417 0.1724 16 6 -0.1071 -3.7975 1.0630 17 1 -0.5371 -3.6637 2.0556 18 6 -0.0873 -5.2060 0.3667 19 6 1.2153 -4.5621 0.8458 20 6 1.9725 -5.1814 1.9921 21 8 1.5211 -5.1308 3.1118 22 8 3.1456 -5.7941 1.7684 23 6 2.0133 -3.7011 -0.1570 24 1 -0.3633 -0.1074 1.0220 25 1 -0.3634 0.9389 -0.4180 26 1 -0.3634 -0.8313 -0.6040 27 1 1.6085 2.0283 0.5139 28 1 3.1500 1.1383 0.5138 29 1 4.0326 4.4426 -0.8503 30 1 -0.4439 -1.6820 0.6676 31 1 -0.4653 -2.7164 -0.7939 32 1 -0.2692 -5.2322 -0.7077 33 1 -0.4592 -6.0640 0.9267 34 1 3.5925 -6.1799 2.5344 35 1 3.0749 -3.7163 0.0897 36 1 1.8535 -4.0570 -1.1748 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693336976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:01 Heat of formation + Delta-G solvation = -39.092593 kcal Electronic energy + Delta-G solvation = -20871.008086 eV Core-core repulsion = 17551.350219 eV Total energy + Delta-G solvation = -3319.657867 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.08764 -39.69883 -38.02022 -36.24087 -34.95951 -33.52494 -32.35459 -29.33834 -27.60505 -26.95715 -24.82978 -24.58588 -22.40408 -21.49581 -19.88919 -19.23633 -18.05974 -17.10078 -16.55298 -16.21188 -15.95004 -15.72581 -15.31277 -14.61854 -14.20478 -13.93932 -13.55877 -13.20542 -13.09767 -12.93120 -12.39488 -12.21980 -11.99119 -11.93400 -11.70744 -11.27884 -11.21184 -10.87679 -10.71119 -10.53925 -10.44838 -10.21323 -10.09453 -9.60830 -9.24780 -8.49827 -8.41334 -7.56883 -6.01596 -4.06157 1.91486 2.68929 3.02644 3.15254 3.31420 3.38975 3.43412 3.79787 4.15107 4.26778 4.37074 4.48012 4.60279 4.87010 4.95182 5.26895 5.28617 5.32199 5.44053 5.55411 5.64383 5.67534 5.79054 5.84533 5.88133 6.16914 6.24758 6.29666 6.91316 7.38781 7.56093 7.72041 7.74452 7.96909 8.26335 8.66131 8.95122 9.31904 9.59599 11.06334 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.032677 B = 0.004544 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.679189 B = 6160.079747 C = 6378.812469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.613 5.613 3 C 0.260 3.740 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.725 3.275 13 O -0.578 6.578 14 N -0.648 5.648 15 C 0.103 3.897 16 C -0.135 4.135 17 H 0.133 0.867 18 C -0.105 4.105 19 C -0.169 4.169 20 C 0.529 3.471 21 O -0.515 6.515 22 O -0.507 6.507 23 C 0.166 3.834 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.044 0.956 29 H 0.262 0.738 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.412 0.588 35 H 0.094 0.906 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.947 -17.779 2.409 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.348 5.348 3 C 0.141 3.859 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.429 3.571 13 O -0.454 6.454 14 N -0.389 5.389 15 C -0.020 4.020 16 C -0.154 4.154 17 H 0.151 0.849 18 C -0.142 4.142 19 C -0.172 4.172 20 C 0.372 3.628 21 O -0.403 6.403 22 O -0.318 6.318 23 C 0.042 3.958 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.132 0.868 31 H 0.094 0.906 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.271 0.729 35 H 0.112 0.888 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.378 -17.195 2.411 19.734 hybrid contribution 0.522 0.053 -0.301 0.605 sum -8.855 -17.142 2.110 19.409 Atomic orbital electron populations 1.22265 0.82237 1.03403 0.99425 1.47388 1.05582 1.06119 1.75726 1.19248 0.92328 0.76839 0.97478 1.21502 1.36264 1.06142 0.92409 0.92427 1.24935 0.95392 0.96403 0.97428 1.69944 1.38498 1.14411 1.30643 0.86435 0.78072 0.78232 0.84612 1.19850 1.20995 1.20892 1.15419 0.84741 0.78937 0.78015 1.90904 1.11331 1.85175 1.58031 1.48316 1.06861 1.04794 1.78923 1.22778 0.83653 0.96733 0.98827 1.24839 0.97003 0.91310 1.02258 0.84909 1.23807 0.93319 0.95157 1.01945 1.22255 0.90831 1.05090 0.98978 1.21796 0.78671 0.74122 0.88244 1.90720 1.68280 1.56524 1.24773 1.84516 1.34836 1.67686 1.44768 1.21346 0.98772 0.79539 0.96149 0.93795 0.90693 0.91313 0.94845 0.93806 0.92787 0.86784 0.90641 0.86868 0.87145 0.72944 0.88751 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 8.72 59.85 0.52 1.64 16 2 N -0.61 -13.51 2.86 -188.74 -0.54 -14.05 16 3 C 0.26 6.98 5.13 -5.20 -0.03 6.95 16 4 C -0.52 -15.09 9.39 -34.44 -0.32 -15.41 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 8 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 C 0.73 16.24 8.39 -86.92 -0.73 15.51 16 13 O -0.58 -15.66 16.18 5.28 0.09 -15.57 16 14 N -0.65 -10.78 3.31 -175.02 -0.58 -11.36 16 15 C 0.10 1.19 4.80 -2.41 -0.01 1.18 16 16 C -0.13 -1.37 6.95 -86.98 -0.60 -1.98 16 17 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16 18 C -0.10 -0.81 10.09 -24.49 -0.25 -1.06 16 19 C -0.17 -1.94 2.77 -154.26 -0.43 -2.36 16 20 C 0.53 6.69 7.90 36.00 0.28 6.98 16 21 O -0.51 -7.78 17.58 -18.76 -0.33 -8.11 16 22 O -0.51 -5.20 13.26 -39.24 -0.52 -5.72 16 23 C 0.17 2.31 6.65 -2.41 -0.02 2.30 16 24 H 0.04 0.60 7.10 -51.93 -0.37 0.23 16 25 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 26 H 0.07 0.90 4.82 -51.93 -0.25 0.65 16 27 H 0.03 0.89 8.07 -51.93 -0.42 0.48 16 28 H 0.04 1.33 7.42 -51.92 -0.39 0.94 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.11 1.27 4.11 -51.93 -0.21 1.06 16 31 H 0.08 0.72 7.84 -51.93 -0.41 0.31 16 32 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.41 2.36 9.10 45.56 0.41 2.78 16 35 H 0.09 1.52 7.60 -51.93 -0.39 1.12 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 306.34 15.07 4.62 4.62 Total: -1.00 -37.48 306.34 -6.90 -44.39 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -3.68 Total: -0.44 kcal Atomic # 6 Polarization: 17.06 SS G_CDS: -1.68 Total: 15.38 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.38 Total: -51.59 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.76 Total: -29.40 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -37.48 -6.90 -44.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693336976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.296 kcal (2) G-P(sol) polarization free energy of solvation -37.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds