Wall clock time and date at job start Mon Mar 30 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46495 * 120.00057 * 2 1 4 4 C 1.50703 * 109.47500 * 270.00272 * 3 2 1 5 5 H 1.08000 * 119.99870 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00214 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00239 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99934 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47192 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46988 * 120.00076 * 8 6 4 11 11 H 1.48505 * 109.46964 * 240.00039 * 8 6 4 12 12 C 1.34776 * 119.99607 * 180.02562 * 2 1 3 13 13 O 1.21593 * 119.99918 * 179.73522 * 12 2 1 14 14 N 1.34781 * 120.00320 * 359.73120 * 12 2 1 15 15 C 1.48140 * 127.83357 * 352.05667 * 14 12 2 16 16 C 1.54384 * 104.61495 * 219.58169 * 15 14 12 17 17 H 1.09001 * 117.04856 * 114.64784 * 16 15 14 18 18 C 1.57125 * 118.20594 * 273.79990 * 16 15 14 19 19 C 1.53004 * 59.65166 * 91.04107 * 18 16 15 20 20 C 1.50690 * 119.54170 * 112.45461 * 19 18 16 21 21 O 1.20833 * 119.99784 * 289.92060 * 20 19 18 22 22 O 1.34225 * 120.00239 * 109.64800 * 20 19 18 23 23 C 1.48144 * 127.83687 * 172.05223 * 14 12 2 24 24 H 1.09000 * 109.46955 * 264.00067 * 1 2 3 25 25 H 1.09002 * 109.47182 * 23.99751 * 1 2 3 26 26 H 1.08994 * 109.47804 * 144.00231 * 1 2 3 27 27 H 1.08996 * 109.47308 * 30.00753 * 3 2 1 28 28 H 1.09008 * 109.47111 * 150.00411 * 3 2 1 29 29 H 0.96997 * 120.00286 * 179.97438 * 7 6 4 30 30 H 1.09000 * 110.41267 * 338.36740 * 15 14 12 31 31 H 1.09000 * 110.40940 * 100.79880 * 15 14 12 32 32 H 1.08997 * 117.14680 * 343.58715 * 18 16 15 33 33 H 1.08998 * 118.27397 * 197.98694 * 18 16 15 34 34 H 0.96708 * 117.00218 * 180.27744 * 22 20 19 35 35 H 1.08996 * 110.41237 * 21.63249 * 23 14 12 36 36 H 1.09007 * 110.40549 * 259.19782 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.5551 3.6171 -0.6731 8 14 3.4375 3.4172 -3.4339 9 1 2.8595 2.4172 -4.3673 10 1 2.8005 4.7383 -3.6664 11 1 4.9000 3.5247 -3.6680 12 6 2.1388 -1.1672 -0.0005 13 8 3.3547 -1.1673 -0.0054 14 7 1.4649 -2.3345 0.0044 15 6 0.0077 -2.5417 0.1724 16 6 -0.1071 -3.7975 1.0630 17 1 -0.5371 -3.6637 2.0556 18 6 -0.0873 -5.2060 0.3667 19 6 1.2153 -4.5621 0.8458 20 6 1.9725 -5.1814 1.9921 21 8 1.5211 -5.1308 3.1118 22 8 3.1456 -5.7941 1.7684 23 6 2.0133 -3.7011 -0.1570 24 1 -0.3633 -0.1074 1.0220 25 1 -0.3634 0.9389 -0.4180 26 1 -0.3634 -0.8313 -0.6040 27 1 1.6085 2.0283 0.5139 28 1 3.1500 1.1383 0.5138 29 1 4.0326 4.4426 -0.8503 30 1 -0.4439 -1.6820 0.6676 31 1 -0.4653 -2.7164 -0.7939 32 1 -0.2692 -5.2322 -0.7077 33 1 -0.4592 -6.0640 0.9267 34 1 3.5925 -6.1799 2.5344 35 1 3.0749 -3.7163 0.0897 36 1 1.8535 -4.0570 -1.1748 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693336976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:01 Heat of formation + Delta-G solvation = -67.152444 kcal Electronic energy + Delta-G solvation = -20872.224852 eV Core-core repulsion = 17551.350219 eV Total energy + Delta-G solvation = -3320.874634 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.12919 -40.96956 -39.29405 -37.19572 -36.74591 -35.10408 -34.13048 -30.60586 -29.35339 -28.25169 -26.37456 -25.56546 -24.21522 -22.34836 -20.82011 -20.76300 -19.01464 -18.71062 -18.25985 -17.50217 -17.32945 -17.02903 -16.62832 -16.39211 -15.41106 -15.10562 -14.82970 -14.74386 -14.37814 -14.22421 -14.01276 -13.57387 -13.27214 -13.00274 -12.94582 -12.87153 -12.64632 -12.59949 -12.27917 -12.17587 -11.74805 -11.68501 -11.35978 -11.14185 -10.86881 -10.63787 -9.97637 -9.23455 -8.20615 -6.36144 0.98137 1.37350 1.40224 1.51018 1.58140 1.98385 2.17528 2.31736 2.40668 3.00907 3.08753 3.29049 3.36123 3.70947 3.98529 4.14599 4.30690 4.38953 4.54274 4.59883 4.72144 4.73739 4.77456 4.82701 4.92350 4.97267 5.13040 5.16758 5.25491 5.48023 5.56646 5.81010 6.06826 6.10772 6.72717 6.89486 7.06933 7.30930 7.65774 8.86181 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.032677 B = 0.004544 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.679189 B = 6160.079747 C = 6378.812469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.622 5.622 3 C 0.276 3.724 4 C -0.540 4.540 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.971 3.029 9 H -0.266 1.266 10 H -0.267 1.267 11 H -0.283 1.283 12 C 0.716 3.284 13 O -0.643 6.643 14 N -0.648 5.648 15 C 0.096 3.904 16 C -0.135 4.135 17 H 0.132 0.868 18 C -0.060 4.060 19 C -0.191 4.191 20 C 0.527 3.473 21 O -0.547 6.547 22 O -0.506 6.506 23 C 0.163 3.837 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.028 0.972 28 H -0.006 1.006 29 H 0.267 0.733 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.143 0.857 33 H 0.129 0.871 34 H 0.429 0.571 35 H 0.060 0.940 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.455 -19.441 0.724 23.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.357 5.357 3 C 0.155 3.845 4 C -0.579 4.579 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.570 5.570 8 Si 0.795 3.205 9 H -0.191 1.191 10 H -0.192 1.192 11 H -0.209 1.209 12 C 0.419 3.581 13 O -0.525 6.525 14 N -0.387 5.387 15 C -0.024 4.024 16 C -0.154 4.154 17 H 0.150 0.850 18 C -0.097 4.097 19 C -0.194 4.194 20 C 0.371 3.629 21 O -0.438 6.438 22 O -0.320 6.320 23 C 0.040 3.960 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.122 0.878 27 H 0.046 0.954 28 H 0.012 0.988 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.129 0.871 32 H 0.161 0.839 33 H 0.147 0.853 34 H 0.291 0.709 35 H 0.079 0.921 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.960 -18.926 0.733 22.400 hybrid contribution 1.312 0.473 0.301 1.426 sum -10.648 -18.453 1.033 21.330 Atomic orbital electron populations 1.22643 0.78363 1.04728 1.01906 1.47248 1.07912 1.04640 1.75861 1.18696 0.90688 0.78996 0.96170 1.21733 1.36738 1.06439 0.92949 0.92867 1.25885 0.94841 0.96379 1.02137 1.70064 1.38988 1.14906 1.33072 0.85316 0.77806 0.78410 0.78922 1.19053 1.19247 1.20888 1.15640 0.84225 0.80350 0.77838 1.90840 1.14379 1.86492 1.60759 1.48249 1.09352 1.03874 1.77266 1.23087 0.80378 0.97849 1.01120 1.24839 0.96017 0.92020 1.02527 0.84976 1.24063 0.88265 0.93630 1.03700 1.22262 0.91455 1.06941 0.98703 1.22115 0.78889 0.73700 0.88167 1.90705 1.69151 1.58051 1.25912 1.84489 1.34223 1.67307 1.45953 1.21498 0.97429 0.78656 0.98419 0.91098 0.91166 0.87786 0.95406 0.98824 0.92391 0.86388 0.87122 0.83903 0.85254 0.70919 0.92102 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.96 8.72 127.77 1.11 3.07 16 2 N -0.62 -27.92 2.86 -869.32 -2.48 -30.41 16 3 C 0.28 15.50 5.13 85.63 0.44 15.93 16 4 C -0.54 -31.85 9.39 25.60 0.24 -31.61 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.37 5.46 84.65 0.46 0.83 16 7 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 8 Si 0.97 45.47 29.54 68.60 2.03 47.49 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 C 0.72 32.92 8.39 179.05 1.50 34.42 16 13 O -0.64 -36.93 16.18 -4.01 -0.06 -36.99 16 14 N -0.65 -20.94 3.31 -825.90 -2.73 -23.68 16 15 C 0.10 1.89 4.80 86.53 0.42 2.31 16 16 C -0.13 -2.28 6.95 -8.44 -0.06 -2.34 16 17 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 18 C -0.06 -0.63 10.09 32.05 0.32 -0.30 16 19 C -0.19 -3.93 2.77 -52.02 -0.14 -4.07 16 20 C 0.53 12.82 7.90 71.23 0.56 13.38 16 21 O -0.55 -16.20 17.58 21.94 0.39 -15.81 16 22 O -0.51 -10.08 13.26 -51.37 -0.68 -10.76 16 23 C 0.16 4.35 6.65 86.54 0.58 4.93 16 24 H 0.07 1.76 7.10 -2.39 -0.02 1.75 16 25 H 0.07 2.19 8.03 -2.39 -0.02 2.17 16 26 H 0.10 2.39 4.82 -2.39 -0.01 2.38 16 27 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 28 H -0.01 -0.42 7.42 -2.38 -0.02 -0.43 16 29 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 30 H 0.12 2.23 4.11 -2.39 -0.01 2.22 16 31 H 0.11 1.50 7.84 -2.39 -0.02 1.48 16 32 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.43 4.70 9.10 -74.05 -0.67 4.03 16 35 H 0.06 2.02 7.60 -2.39 -0.02 2.00 16 36 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -87.03 306.34 2.61 -84.42 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 0.44 Total: 6.16 kcal Atomic # 6 Polarization: 31.11 SS G_CDS: 5.43 Total: 36.54 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -4.93 Total: -111.05 kcal Atomic # 8 Polarization: -63.20 SS G_CDS: -0.36 Total: -63.56 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -87.03 2.61 -84.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693336976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.268 kcal (2) G-P(sol) polarization free energy of solvation -87.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds