Wall clock time and date at job start Mon Mar 30 2020 05:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29422 * 125.69490 * 2 1 4 4 N 1.26396 * 116.47506 * 180.02562 * 3 2 1 5 5 C 1.29413 * 116.47606 * 0.02562 * 4 3 2 6 6 C 1.50702 * 125.69609 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47413 * 90.02052 * 6 5 4 8 8 C 1.46903 * 111.00133 * 190.00079 * 7 6 5 9 9 C 1.53230 * 109.33899 * 187.25239 * 8 7 6 10 10 N 1.47080 * 108.52531 * 306.16795 * 9 8 7 11 11 C 1.36931 * 120.88364 * 231.18821 * 10 9 8 12 12 H 1.07994 * 120.00368 * 26.84029 * 11 10 9 13 13 C 1.38812 * 119.99721 * 206.56279 * 11 10 9 14 14 N 1.31619 * 120.00606 * 17.47328 * 13 11 10 15 15 Si 1.86807 * 119.99780 * 197.47555 * 13 11 10 16 16 H 1.48504 * 109.46947 * 94.38387 * 15 13 11 17 17 H 1.48508 * 109.46899 * 214.38152 * 15 13 11 18 18 H 1.48495 * 109.47303 * 334.38014 * 15 13 11 19 19 C 1.47082 * 118.23403 * 51.45931 * 10 9 8 20 20 C 1.46904 * 110.99940 * 314.30418 * 7 6 5 21 21 S 1.71213 * 108.60905 * 0.22348 * 5 4 3 22 22 H 1.09006 * 109.47365 * 89.97928 * 1 2 3 23 23 H 1.08998 * 109.47289 * 209.97482 * 1 2 3 24 24 H 1.08998 * 109.47298 * 329.97208 * 1 2 3 25 25 H 1.09004 * 109.47227 * 330.01716 * 6 5 4 26 26 H 1.09004 * 109.47144 * 210.02462 * 6 5 4 27 27 H 1.09001 * 109.49186 * 67.29185 * 8 7 6 28 28 H 1.08999 * 109.49207 * 307.21639 * 8 7 6 29 29 H 1.09004 * 109.63143 * 186.45915 * 9 8 7 30 30 H 1.09004 * 109.79153 * 65.97703 * 9 8 7 31 31 H 0.96993 * 120.00972 * 179.97438 * 14 13 11 32 32 H 1.09000 * 109.63087 * 68.24805 * 19 10 9 33 33 H 1.08996 * 109.63194 * 188.83501 * 19 10 9 34 34 H 1.09005 * 109.48966 * 292.70358 * 20 7 6 35 35 H 1.08993 * 109.49068 * 52.75434 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2620 1.0511 0.0000 4 7 3.5097 0.8486 -0.0005 5 6 3.8936 -0.3873 -0.0015 6 6 5.3232 -0.8640 -0.0028 7 7 5.7886 -1.0202 1.3817 8 6 7.2385 -1.2526 1.4267 9 6 7.6541 -1.5890 2.8627 10 7 7.1672 -0.5234 3.7520 11 6 8.0109 0.0944 4.6361 12 1 9.0689 0.1472 4.4260 13 6 7.5053 0.6578 5.7996 14 7 6.3095 0.3164 6.2306 15 14 8.5222 1.9009 6.7537 16 1 8.1482 3.2747 6.3317 17 1 8.2625 1.7415 8.2072 18 1 9.9643 1.6745 6.4809 19 6 5.7487 -0.1433 3.6706 20 6 5.4093 0.1403 2.1987 21 16 2.5061 -1.3904 -0.0081 22 1 -0.3634 0.0004 -1.0277 23 1 -0.3634 -0.8902 0.5134 24 1 -0.3634 0.8897 0.5143 25 1 5.9491 -0.1342 -0.5164 26 1 5.3861 -1.8227 -0.5176 27 1 7.7612 -0.3544 1.0977 28 1 7.4942 -2.0839 0.7697 29 1 8.7407 -1.6497 2.9248 30 1 7.2168 -2.5422 3.1598 31 1 5.9563 0.7098 7.0438 32 1 5.1290 -0.9596 4.0416 33 1 5.5749 0.7524 4.2669 34 1 5.9576 1.0191 1.8589 35 1 4.3387 0.3194 2.1011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698290999.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:33 Heat of formation + Delta-G solvation = 77.533413 kcal Electronic energy + Delta-G solvation = -18460.768836 eV Core-core repulsion = 15621.213874 eV Total energy + Delta-G solvation = -2839.554962 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.39920 -39.75133 -36.54968 -34.31896 -33.18299 -31.69465 -30.92635 -28.66957 -26.92713 -25.43375 -24.33618 -23.87198 -20.95571 -20.72469 -20.21160 -18.78347 -17.47636 -16.76133 -16.65574 -16.03160 -15.86262 -15.40512 -15.19207 -14.96471 -14.83447 -14.24367 -14.15971 -13.85704 -13.37076 -13.27071 -13.11213 -12.97253 -12.66413 -12.37753 -12.11485 -11.97195 -11.72545 -11.56750 -11.39610 -11.17543 -10.71904 -10.62569 -10.57674 -9.42775 -8.73964 -7.91156 -5.35667 -0.57720 -0.04459 0.37309 1.43628 1.45951 1.47653 1.54815 2.48129 2.85044 3.03619 3.25018 3.56830 3.63068 3.87208 4.16223 4.18333 4.29241 4.40762 4.47649 4.58380 4.60524 4.63084 4.68241 4.75407 4.83828 4.97564 5.07283 5.14614 5.33354 5.57201 5.59103 5.95633 6.05170 6.33449 7.08883 7.53621 7.80098 8.34177 9.16170 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.027756 B = 0.005014 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.541788 B = 5582.900179 C = 6145.815736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.030 4.030 3 N -0.307 5.307 4 N -0.295 5.295 5 C -0.031 4.031 6 C 0.132 3.868 7 N -0.530 5.530 8 C 0.054 3.946 9 C 0.143 3.857 10 N -0.614 5.614 11 C -0.264 4.264 12 H 0.072 0.928 13 C -0.052 4.052 14 N -0.938 5.938 15 Si 0.967 3.033 16 H -0.290 1.290 17 H -0.293 1.293 18 H -0.264 1.264 19 C 0.190 3.810 20 C 0.063 3.937 21 S 0.251 5.749 22 H 0.113 0.887 23 H 0.108 0.892 24 H 0.091 0.909 25 H 0.064 0.936 26 H 0.135 0.865 27 H 0.027 0.973 28 H 0.114 0.886 29 H 0.067 0.933 30 H 0.023 0.977 31 H 0.250 0.750 32 H 0.000 1.000 33 H 0.050 0.950 34 H 0.013 0.987 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.286 -6.748 -16.266 19.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.309 4.309 3 N -0.145 5.145 4 N -0.133 5.133 5 C -0.310 4.310 6 C 0.001 3.999 7 N -0.256 5.256 8 C -0.074 4.074 9 C 0.018 3.982 10 N -0.338 5.338 11 C -0.394 4.394 12 H 0.090 0.910 13 C -0.247 4.247 14 N -0.584 5.584 15 Si 0.795 3.205 16 H -0.217 1.217 17 H -0.219 1.219 18 H -0.188 1.188 19 C 0.064 3.936 20 C -0.067 4.067 21 S 0.494 5.506 22 H 0.131 0.869 23 H 0.127 0.873 24 H 0.110 0.890 25 H 0.082 0.918 26 H 0.152 0.848 27 H 0.046 0.954 28 H 0.132 0.868 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.018 0.982 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.496 -6.768 -15.947 19.755 hybrid contribution 0.781 1.818 0.721 2.106 sum -8.715 -4.950 -15.226 18.229 Atomic orbital electron populations 1.20628 0.81066 1.05871 1.05904 1.29982 1.06192 0.92157 1.02537 1.71405 0.97122 1.28804 1.17178 1.71446 1.07364 1.18930 1.15581 1.29184 1.04625 0.92861 1.04314 1.20822 0.85255 1.02675 0.91131 1.62204 1.15784 1.39189 1.08437 1.22586 0.85373 1.00916 0.98559 1.21180 0.97776 0.90306 0.88976 1.44418 1.06498 1.40353 1.42579 1.19589 0.91578 1.29969 0.98282 0.91031 1.25806 0.98466 1.03007 0.97464 1.70184 1.19873 1.44934 1.23389 0.85249 0.78971 0.78942 0.77306 1.21739 1.21932 1.18785 1.20623 0.84379 0.97573 0.91024 1.22517 0.98181 0.90610 0.95390 1.83267 0.94852 1.09390 1.63049 0.86920 0.87300 0.88991 0.91751 0.84754 0.95438 0.86841 0.91439 0.95868 0.94116 0.98161 0.93141 0.96900 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.48 71.23 0.75 -0.23 16 2 C -0.03 -0.70 7.53 88.46 0.67 -0.04 16 3 N -0.31 -9.94 11.66 -50.85 -0.59 -10.53 16 4 N -0.29 -10.27 10.67 -50.85 -0.54 -10.82 16 5 C -0.03 -0.88 5.32 88.47 0.47 -0.41 16 6 C 0.13 3.48 5.87 85.56 0.50 3.98 16 7 N -0.53 -18.15 4.77 -898.88 -4.29 -22.44 16 8 C 0.05 1.77 5.58 86.38 0.48 2.25 16 9 C 0.14 5.89 6.69 86.35 0.58 6.46 16 10 N -0.61 -32.17 3.03 -697.26 -2.11 -34.28 16 11 C -0.26 -14.97 9.63 84.03 0.81 -14.17 16 12 H 0.07 3.90 7.88 -2.91 -0.02 3.88 16 13 C -0.05 -3.02 4.93 84.86 0.42 -2.60 16 14 N -0.94 -57.58 11.16 21.65 0.24 -57.34 16 15 Si 0.97 46.24 29.59 68.60 2.03 48.27 16 16 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 17 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 18 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 19 C 0.19 9.97 5.45 86.50 0.47 10.44 16 20 C 0.06 2.71 5.15 86.54 0.45 3.15 16 21 S 0.25 5.27 23.04 -56.49 -1.30 3.97 16 22 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 23 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.72 8.08 -2.39 -0.02 1.70 16 26 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.11 2.68 8.11 -2.39 -0.02 2.66 16 29 H 0.07 2.61 7.95 -2.38 -0.02 2.60 16 30 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 32 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.05 3.00 6.11 -2.39 -0.01 2.99 16 34 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.05 2.31 5.88 -2.39 -0.01 2.29 16 Total: -1.00 -73.82 299.34 0.11 -73.71 By element: Atomic # 1 Polarization: -0.47 SS G_CDS: 1.09 Total: 0.61 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 5.59 Total: 8.84 kcal Atomic # 7 Polarization: -128.12 SS G_CDS: -7.30 Total: -135.41 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Atomic # 16 Polarization: 5.27 SS G_CDS: -1.30 Total: 3.97 kcal Total: -73.82 0.11 -73.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698290999.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.247 kcal (2) G-P(sol) polarization free energy of solvation -73.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds