Wall clock time and date at job start Mon Mar 30 2020 04:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86803 * 119.99714 * 2 1 4 4 H 1.48500 * 109.46986 * 269.99853 * 3 2 1 5 5 H 1.48492 * 109.47096 * 30.00115 * 3 2 1 6 6 H 1.48506 * 109.46749 * 150.00112 * 3 2 1 7 7 C 1.39582 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00383 * 180.02562 * 7 2 1 9 9 N 1.36126 * 119.99932 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00159 * 179.97438 * 9 7 2 11 11 O 1.21503 * 119.99509 * 0.02562 * 10 9 7 12 12 C 1.48826 * 120.00107 * 180.02562 * 10 9 7 13 13 O 1.21443 * 119.99873 * 0.02562 * 12 10 9 14 14 N 1.34773 * 120.00080 * 180.27489 * 12 10 9 15 15 C 1.47551 * 125.67026 * 359.42470 * 14 12 10 16 16 C 1.55416 * 104.86640 * 156.00875 * 15 14 12 17 17 C 1.53788 * 101.32712 * 35.95009 * 16 15 14 18 18 C 1.53150 * 111.48335 * 204.59312 * 17 16 15 19 19 C 1.54822 * 103.55329 * 238.46627 * 18 17 16 20 20 O 1.44555 * 104.86618 * 23.72295 * 19 18 17 21 21 C 1.44753 * 105.52037 * 320.39248 * 20 19 18 22 22 C 1.47369 * 125.67710 * 179.72372 * 14 12 10 23 23 H 0.96999 * 120.00097 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99701 * 0.02562 * 9 7 2 25 25 H 1.08997 * 110.33470 * 274.98770 * 15 14 12 26 26 H 1.08994 * 110.34339 * 37.23339 * 15 14 12 27 27 H 1.09005 * 111.24627 * 277.87973 * 16 15 14 28 28 H 1.08994 * 110.91429 * 153.88324 * 16 15 14 29 29 H 1.09000 * 110.60650 * 356.98021 * 18 17 16 30 30 H 1.08992 * 110.60810 * 119.79112 * 18 17 16 31 31 H 1.08994 * 110.36053 * 142.56846 * 19 18 17 32 32 H 1.09001 * 110.35776 * 264.77307 * 19 18 17 33 33 H 1.09005 * 110.43192 * 280.42873 * 21 20 19 34 34 H 1.08997 * 110.43604 * 157.94079 * 21 20 19 35 35 H 1.09001 * 109.97979 * 301.38493 * 22 14 12 36 36 H 1.09000 * 109.98112 * 62.66275 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 2.4916 2.0465 -1.4001 5 1 1.4415 2.6526 0.7000 6 1 3.5417 1.4402 0.7001 7 6 2.0081 -1.2088 -0.0005 8 1 3.0881 -1.2088 -0.0001 9 7 1.3275 -2.3877 -0.0005 10 6 2.0014 -3.5549 -0.0016 11 8 3.2164 -3.5548 -0.0021 12 6 1.2573 -4.8438 -0.0022 13 8 0.0429 -4.8438 -0.0022 14 7 1.9312 -6.0109 0.0024 15 6 3.3994 -6.1568 -0.0039 16 6 3.6636 -7.5577 0.6151 17 6 2.4737 -8.3608 0.0636 18 6 2.1440 -9.5599 0.9574 19 6 2.2853 -10.7722 0.0049 20 8 3.1734 -10.3197 -1.0421 21 6 2.7862 -8.9517 -1.3141 22 6 1.3242 -7.3538 0.0082 23 1 -0.4850 0.8400 -0.0004 24 1 0.3575 -2.3877 -0.0005 25 1 3.7801 -6.1126 -1.0242 26 1 3.8599 -5.3804 0.6070 27 1 3.6386 -7.5194 1.7042 28 1 4.6097 -7.9672 0.2612 29 1 2.8560 -9.6330 1.7795 30 1 1.1257 -9.4855 1.3389 31 1 2.7221 -11.6201 0.5324 32 1 1.3146 -11.0436 -0.4101 33 1 1.9004 -8.9260 -1.9489 34 1 3.6073 -8.4098 -1.7832 35 1 0.6850 -7.4698 0.8835 36 1 0.7417 -7.5032 -0.9009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707345590.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:34 Heat of formation + Delta-G solvation = -131.444565 kcal Electronic energy + Delta-G solvation = -20699.781261 eV Core-core repulsion = 17376.118712 eV Total energy + Delta-G solvation = -3323.662549 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.91474 -40.72317 -39.06843 -37.87231 -36.25152 -33.74909 -33.30159 -31.18355 -30.02461 -28.21904 -26.92106 -25.02203 -23.60257 -23.09640 -20.83480 -20.59229 -20.05650 -18.28035 -17.89157 -17.47508 -16.80484 -16.77022 -16.69079 -16.04044 -15.79676 -15.49844 -15.19648 -14.69463 -14.43142 -14.04870 -13.99056 -13.69873 -13.63259 -13.06052 -12.96348 -12.85787 -12.57711 -12.41441 -12.26835 -12.10673 -11.89811 -11.67952 -11.65048 -11.44401 -10.68594 -10.28623 -10.12678 -9.80096 -8.66387 -6.11216 0.56694 1.39851 1.46463 1.53648 1.66372 2.26646 2.33789 2.92702 3.05817 3.14030 3.35946 3.42078 3.66371 3.95375 3.99994 4.06539 4.21118 4.31395 4.49037 4.53148 4.64359 4.65574 4.81190 4.87965 4.90710 4.97962 5.01745 5.12773 5.18706 5.23446 5.27228 5.67865 5.81960 6.15093 6.30484 6.72232 6.94532 7.26895 7.78860 8.49638 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.051440 B = 0.003927 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.194472 B = 7129.096726 C = 7431.172615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.005 4.005 3 Si 1.011 2.989 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.344 4.344 8 H 0.100 0.900 9 N -0.513 5.513 10 C 0.393 3.607 11 O -0.603 6.603 12 C 0.526 3.474 13 O -0.571 6.571 14 N -0.594 5.594 15 C 0.097 3.903 16 C -0.106 4.106 17 C -0.099 4.099 18 C -0.135 4.135 19 C 0.041 3.959 20 O -0.393 6.393 21 C 0.060 3.940 22 C 0.117 3.883 23 H 0.289 0.711 24 H 0.399 0.601 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.439 -17.419 1.263 18.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.210 4.210 3 Si 0.831 3.169 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.473 4.473 8 H 0.118 0.882 9 N -0.146 5.146 10 C 0.178 3.822 11 O -0.493 6.493 12 C 0.312 3.688 13 O -0.451 6.451 14 N -0.328 5.328 15 C -0.025 4.025 16 C -0.144 4.144 17 C -0.100 4.100 18 C -0.173 4.173 19 C -0.035 4.035 20 O -0.312 6.312 21 C -0.017 4.017 22 C -0.004 4.004 23 H 0.099 0.901 24 H 0.234 0.766 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.126 0.874 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.127 0.873 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.547 -17.349 1.162 17.972 hybrid contribution -0.707 1.135 -0.040 1.338 sum 3.840 -16.213 1.121 16.700 Atomic orbital electron populations 1.69555 1.07886 1.30798 1.45294 1.26553 0.96490 1.03507 0.94405 0.84684 0.78016 0.74977 0.79177 1.18987 1.19187 1.18666 1.19984 0.93696 0.82935 1.50710 0.88168 1.41654 1.10163 1.04751 1.58075 1.19441 0.87942 0.84927 0.89871 1.90502 1.13412 1.86812 1.58538 1.19914 0.86589 0.85069 0.77255 1.90674 1.14564 1.87894 1.52005 1.48347 1.09323 1.04584 1.70515 1.22810 0.78461 0.99133 1.02075 1.22852 0.98420 0.91770 1.01361 1.21995 0.95007 0.95438 0.97585 1.22868 1.04154 0.91878 0.98398 1.23668 0.94620 0.97414 0.87786 1.89171 1.57477 1.27371 1.57176 1.23368 1.01282 0.82417 0.94616 1.22133 0.95841 0.79659 1.02792 0.90125 0.76644 0.91223 0.89943 0.89397 0.87361 0.88683 0.88981 0.87321 0.91383 0.91560 0.88421 0.90478 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.56 13.03 21.76 0.28 -48.27 16 2 C -0.01 -0.29 5.51 85.14 0.47 0.18 16 3 Si 1.01 40.74 29.56 68.60 2.03 42.77 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 7 C -0.34 -19.35 9.67 84.35 0.82 -18.53 16 8 H 0.10 5.76 7.15 -2.91 -0.02 5.74 16 9 N -0.51 -28.44 5.25 -308.87 -1.62 -30.06 16 10 C 0.39 20.41 7.78 87.08 0.68 21.08 16 11 O -0.60 -32.19 13.33 -3.72 -0.05 -32.24 16 12 C 0.53 23.91 7.90 87.08 0.69 24.60 16 13 O -0.57 -28.03 16.80 -3.54 -0.06 -28.09 16 14 N -0.59 -20.96 3.34 -814.57 -2.72 -23.68 16 15 C 0.10 2.94 6.00 87.01 0.52 3.47 16 16 C -0.11 -2.17 5.78 31.69 0.18 -1.99 16 17 C -0.10 -1.92 0.80 -51.85 -0.04 -1.96 16 18 C -0.14 -1.89 6.38 31.27 0.20 -1.70 16 19 C 0.04 0.57 7.67 72.60 0.56 1.13 16 20 O -0.39 -7.82 11.66 -148.98 -1.74 -9.56 16 21 C 0.06 1.15 6.66 72.02 0.48 1.63 16 22 C 0.12 3.08 6.09 86.19 0.53 3.60 16 23 H 0.29 14.28 8.30 -92.71 -0.77 13.51 16 24 H 0.40 22.55 7.35 -92.71 -0.68 21.87 16 25 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.08 2.99 6.14 -2.39 -0.01 2.98 16 27 H 0.09 1.68 7.93 -2.38 -0.02 1.66 16 28 H 0.11 1.82 7.96 -2.39 -0.02 1.80 16 29 H 0.09 1.14 7.65 -2.39 -0.02 1.12 16 30 H 0.09 1.16 7.43 -2.39 -0.02 1.14 16 31 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 1.24 7.51 -2.38 -0.02 1.23 16 34 H 0.10 1.85 7.80 -2.39 -0.02 1.83 16 35 H 0.08 1.98 7.50 -2.39 -0.02 1.97 16 36 H 0.07 1.88 7.44 -2.39 -0.02 1.86 16 Total: -1.00 -67.35 299.11 1.63 -65.72 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: 0.43 Total: 31.92 kcal Atomic # 6 Polarization: 26.44 SS G_CDS: 5.08 Total: 31.51 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -4.06 Total: -102.02 kcal Atomic # 8 Polarization: -68.04 SS G_CDS: -1.85 Total: -69.89 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -67.35 1.63 -65.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707345590.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.729 kcal (2) G-P(sol) polarization free energy of solvation -67.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds