Wall clock time and date at job start Mon Mar 30 2020 05:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47081 * 2 1 4 4 C 1.36934 * 125.63629 * 270.02639 * 3 2 1 5 5 C 1.35258 * 107.87094 * 179.72643 * 4 3 2 6 6 C 1.46471 * 126.39378 * 180.23074 * 5 4 3 7 7 O 1.21625 * 120.00369 * 180.18576 * 6 5 4 8 8 O 1.34899 * 119.99630 * 0.19268 * 6 5 4 9 9 N 1.39879 * 107.21814 * 0.39098 * 5 4 3 10 10 C 1.46496 * 126.19183 * 179.86686 * 9 5 4 11 11 C 1.52997 * 109.47294 * 269.71332 * 10 9 5 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47184 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99933 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99912 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47017 * 89.99937 * 17 15 13 19 19 H 1.48507 * 109.47241 * 209.99826 * 17 15 13 20 20 H 1.48500 * 109.47209 * 329.99791 * 17 15 13 21 21 C 1.34621 * 125.63812 * 90.00094 * 3 2 1 22 22 O 1.21727 * 125.71537 * 0.05390 * 21 3 2 23 23 H 1.08998 * 109.47470 * 60.00410 * 1 2 3 24 24 H 1.09004 * 109.46954 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47569 * 299.99662 * 1 2 3 26 26 H 1.08995 * 109.47327 * 239.99983 * 2 1 3 27 27 H 1.08998 * 109.47470 * 119.99590 * 2 1 3 28 28 H 1.07993 * 126.06161 * 359.97438 * 4 3 2 29 29 H 0.96701 * 116.99941 * 179.97438 * 8 6 5 30 30 H 1.09001 * 109.47054 * 149.71064 * 10 9 5 31 31 H 1.09004 * 109.47074 * 29.71577 * 10 9 5 32 32 H 1.09001 * 109.46832 * 60.00150 * 11 10 9 33 33 H 1.08993 * 109.47194 * 299.99671 * 11 10 9 34 34 H 1.09001 * 109.46801 * 300.00272 * 12 11 10 35 35 H 1.09001 * 109.46998 * 59.99868 * 12 11 10 36 36 H 0.97007 * 120.00011 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2837 2.1336 -1.1129 5 6 2.7075 3.3500 -0.7002 6 6 3.0963 4.4719 -1.5579 7 8 3.4648 5.5187 -1.0602 8 8 3.0455 4.3441 -2.8998 9 7 2.7086 3.3354 0.6985 10 6 3.0994 4.4425 1.5748 11 6 4.5957 4.3480 1.8796 12 6 5.0039 5.5046 2.7943 13 6 6.4776 5.4112 3.0950 14 1 7.0645 4.6075 2.6754 15 6 7.0769 6.3523 3.9050 16 7 8.3631 6.2710 4.1671 17 14 6.0620 7.7427 4.6303 18 1 5.5145 7.3223 5.9450 19 1 6.9212 8.9402 4.8120 20 1 4.9434 8.0711 3.7104 21 6 2.2798 2.1207 1.0941 22 8 2.1509 1.7535 2.2475 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 2.1706 1.8139 -2.1382 29 1 3.3115 5.1118 -3.4243 30 1 2.5347 4.3860 2.5054 31 1 2.8887 5.3901 1.0790 32 1 5.1603 4.4046 0.9489 33 1 4.8063 3.4005 2.3754 34 1 4.7932 6.4520 2.2980 35 1 4.4392 5.4485 3.7249 36 1 8.7847 6.9329 4.7373 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711257451.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:07 Heat of formation + Delta-G solvation = -80.141390 kcal Electronic energy + Delta-G solvation = -20536.751210 eV Core-core repulsion = 17215.313334 eV Total energy + Delta-G solvation = -3321.437877 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.53452 -39.91606 -36.79480 -36.63518 -35.85086 -34.11871 -32.34640 -30.82423 -29.57645 -27.29873 -24.85254 -24.05304 -22.66170 -21.44865 -20.37905 -19.97949 -18.12264 -17.67478 -16.71525 -16.62057 -16.39350 -15.56473 -15.34198 -15.17516 -14.48690 -14.17629 -14.03871 -13.84052 -13.61366 -13.09596 -12.72335 -12.46841 -12.31508 -11.84126 -11.68976 -11.57348 -11.47099 -11.17841 -10.87637 -10.70361 -10.40246 -10.13901 -9.91122 -9.67202 -9.48498 -9.12970 -8.46946 -7.84530 -5.97630 -3.95199 1.02527 2.06786 2.51834 2.79083 2.97933 3.37375 3.43704 3.48819 3.64919 4.39666 4.52079 4.69097 4.75717 4.91130 4.99080 5.06178 5.32627 5.34902 5.36837 5.47441 5.73736 5.77868 5.91447 6.00069 6.21775 6.34002 6.46626 6.53383 6.80704 6.92002 7.21372 7.34317 7.49395 7.78102 7.84957 8.27302 8.60917 9.06870 9.64672 11.15970 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021619 B = 0.004954 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.843642 B = 5650.797063 C = 6454.698581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.121 3.879 3 N -0.522 5.522 4 C 0.087 3.913 5 C -0.030 4.030 6 C 0.556 3.444 7 O -0.494 6.494 8 O -0.512 6.512 9 N -0.501 5.501 10 C 0.121 3.879 11 C -0.110 4.110 12 C -0.009 4.009 13 C -0.517 4.517 14 H 0.070 0.930 15 C 0.066 3.934 16 N -0.905 5.905 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.264 1.264 21 C 0.651 3.349 22 O -0.556 6.556 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.196 0.804 29 H 0.420 0.580 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.020 0.980 35 H 0.013 0.987 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.078 -10.443 -16.745 26.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.240 5.240 4 C -0.045 4.045 5 C -0.137 4.137 6 C 0.398 3.602 7 O -0.381 6.381 8 O -0.324 6.324 9 N -0.222 5.222 10 C 0.002 3.998 11 C -0.149 4.149 12 C -0.047 4.047 13 C -0.555 4.555 14 H 0.089 0.911 15 C -0.135 4.135 16 N -0.544 5.544 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.189 1.189 21 C 0.353 3.647 22 O -0.432 6.432 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.213 0.787 29 H 0.280 0.720 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.032 0.968 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.041 -10.661 -15.338 25.284 hybrid contribution -0.115 1.274 0.010 1.280 sum -17.156 -9.387 -15.327 24.847 Atomic orbital electron populations 1.22179 0.94508 1.03062 1.03135 1.21684 0.95230 0.78331 1.04791 1.45353 1.58181 1.14220 1.06201 1.22164 0.99716 0.89041 0.93539 1.18249 1.16337 0.94963 0.84157 1.19013 0.74753 0.85697 0.80715 1.91037 1.42976 1.29053 1.75010 1.84478 1.81768 1.47875 1.18281 1.45672 1.58640 1.13906 1.03958 1.22161 0.98583 0.86330 0.92741 1.21776 0.91244 1.01124 1.00730 1.19497 0.97553 0.93508 0.94153 1.21087 0.92039 1.12452 1.29880 0.91139 1.25015 0.94815 0.97712 0.95945 1.69920 1.10174 1.36221 1.38131 0.86769 0.80597 0.81994 0.79921 1.20253 1.21395 1.18877 1.16150 0.82586 0.81010 0.84906 1.91059 1.61780 1.74185 1.16171 0.91963 0.90564 0.91694 0.88796 0.88528 0.78715 0.72042 0.89472 0.88280 0.92318 0.92405 0.96144 0.96831 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.24 37.16 0.38 -0.75 16 2 C 0.12 0.93 6.70 -4.04 -0.03 0.91 16 3 N -0.52 -6.03 2.72 -121.34 -0.33 -6.36 16 4 C 0.09 0.83 11.20 -16.33 -0.18 0.65 16 5 C -0.03 -0.40 6.88 -81.93 -0.56 -0.96 16 6 C 0.56 7.04 8.30 34.05 0.28 7.32 16 7 O -0.49 -8.21 15.61 -19.36 -0.30 -8.51 16 8 O -0.51 -4.05 13.24 -41.04 -0.54 -4.59 16 9 N -0.50 -8.34 2.81 -117.44 -0.33 -8.67 16 10 C 0.12 2.27 5.55 -4.05 -0.02 2.25 16 11 C -0.11 -2.45 5.48 -26.73 -0.15 -2.60 16 12 C -0.01 -0.23 4.04 -27.88 -0.11 -0.35 16 13 C -0.52 -15.60 9.66 -34.44 -0.33 -15.93 16 14 H 0.07 2.29 7.99 -52.48 -0.42 1.87 16 15 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 16 N -0.91 -28.97 13.96 55.43 0.77 -28.20 16 17 Si 0.88 22.66 27.47 -169.99 -4.67 17.99 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 21 C 0.65 10.82 8.49 -87.08 -0.74 10.08 16 22 O -0.56 -11.23 17.58 5.16 0.09 -11.14 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.10 0.85 8.04 -51.93 -0.42 0.44 16 28 H 0.20 0.97 8.06 -52.49 -0.42 0.55 16 29 H 0.42 1.59 9.11 45.56 0.42 2.01 16 30 H 0.09 1.62 8.08 -51.93 -0.42 1.20 16 31 H 0.10 1.82 6.43 -51.93 -0.33 1.48 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.02 0.52 7.20 -51.93 -0.37 0.14 16 35 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 36 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 315.79 15.07 4.76 4.76 Total: -1.00 -38.67 315.79 -6.18 -44.85 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -4.07 Total: -2.67 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.56 Total: 2.55 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.11 Total: -43.22 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.75 Total: -24.25 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.67 Total: 17.99 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -38.67 -6.18 -44.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711257451.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.294 kcal (2) G-P(sol) polarization free energy of solvation -38.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds