Wall clock time and date at job start Mon Mar 30 2020 05:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47081 * 2 1 4 4 C 1.36934 * 125.63629 * 270.02639 * 3 2 1 5 5 C 1.35258 * 107.87094 * 179.72643 * 4 3 2 6 6 C 1.46471 * 126.39378 * 180.23074 * 5 4 3 7 7 O 1.21625 * 120.00369 * 180.18576 * 6 5 4 8 8 O 1.34899 * 119.99630 * 0.19268 * 6 5 4 9 9 N 1.39879 * 107.21814 * 0.39098 * 5 4 3 10 10 C 1.46496 * 126.19183 * 179.86686 * 9 5 4 11 11 C 1.52997 * 109.47294 * 269.71332 * 10 9 5 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47184 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99933 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99912 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47017 * 89.99937 * 17 15 13 19 19 H 1.48507 * 109.47241 * 209.99826 * 17 15 13 20 20 H 1.48500 * 109.47209 * 329.99791 * 17 15 13 21 21 C 1.34621 * 125.63812 * 90.00094 * 3 2 1 22 22 O 1.21727 * 125.71537 * 0.05390 * 21 3 2 23 23 H 1.08998 * 109.47470 * 60.00410 * 1 2 3 24 24 H 1.09004 * 109.46954 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47569 * 299.99662 * 1 2 3 26 26 H 1.08995 * 109.47327 * 239.99983 * 2 1 3 27 27 H 1.08998 * 109.47470 * 119.99590 * 2 1 3 28 28 H 1.07993 * 126.06161 * 359.97438 * 4 3 2 29 29 H 0.96701 * 116.99941 * 179.97438 * 8 6 5 30 30 H 1.09001 * 109.47054 * 149.71064 * 10 9 5 31 31 H 1.09004 * 109.47074 * 29.71577 * 10 9 5 32 32 H 1.09001 * 109.46832 * 60.00150 * 11 10 9 33 33 H 1.08993 * 109.47194 * 299.99671 * 11 10 9 34 34 H 1.09001 * 109.46801 * 300.00272 * 12 11 10 35 35 H 1.09001 * 109.46998 * 59.99868 * 12 11 10 36 36 H 0.97007 * 120.00011 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2837 2.1336 -1.1129 5 6 2.7075 3.3500 -0.7002 6 6 3.0963 4.4719 -1.5579 7 8 3.4648 5.5187 -1.0602 8 8 3.0455 4.3441 -2.8998 9 7 2.7086 3.3354 0.6985 10 6 3.0994 4.4425 1.5748 11 6 4.5957 4.3480 1.8796 12 6 5.0039 5.5046 2.7943 13 6 6.4776 5.4112 3.0950 14 1 7.0645 4.6075 2.6754 15 6 7.0769 6.3523 3.9050 16 7 8.3631 6.2710 4.1671 17 14 6.0620 7.7427 4.6303 18 1 5.5145 7.3223 5.9450 19 1 6.9212 8.9402 4.8120 20 1 4.9434 8.0711 3.7104 21 6 2.2798 2.1207 1.0941 22 8 2.1509 1.7535 2.2475 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 2.1706 1.8139 -2.1382 29 1 3.3115 5.1118 -3.4243 30 1 2.5347 4.3860 2.5054 31 1 2.8887 5.3901 1.0790 32 1 5.1603 4.4046 0.9489 33 1 4.8063 3.4005 2.3754 34 1 4.7932 6.4520 2.2980 35 1 4.4392 5.4485 3.7249 36 1 8.7847 6.9329 4.7373 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711257451.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:07 Heat of formation + Delta-G solvation = -108.348989 kcal Electronic energy + Delta-G solvation = -20537.974384 eV Core-core repulsion = 17215.313334 eV Total energy + Delta-G solvation = -3322.661050 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.61207 -40.82787 -38.07014 -37.76088 -36.82801 -35.80343 -34.17057 -32.21516 -30.55496 -29.04266 -25.83061 -25.44381 -23.86536 -22.45521 -22.20691 -21.20471 -19.15076 -18.94041 -18.47832 -17.74770 -17.46773 -16.59075 -16.49116 -16.37241 -16.13907 -15.75756 -15.17419 -14.93422 -14.83577 -14.45262 -14.06813 -13.95615 -13.44180 -13.23414 -13.03037 -12.73467 -12.67124 -12.46058 -12.13418 -12.05387 -11.91738 -11.84436 -11.69242 -11.49510 -11.35662 -10.92196 -10.80398 -8.96483 -8.33379 -6.38573 0.13853 1.00720 1.33844 1.36177 1.49011 1.64748 1.68965 1.96254 2.34101 2.66780 3.01436 3.58565 3.87032 3.99138 4.07175 4.15769 4.20987 4.30970 4.36763 4.48375 4.51611 4.67983 4.79400 4.87956 4.91353 5.08258 5.25467 5.28317 5.34551 5.45102 5.57153 5.61061 5.65222 6.16622 6.22097 6.66972 6.97613 7.08822 7.25599 8.83753 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021619 B = 0.004954 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.843642 B = 5650.797063 C = 6454.698581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.111 3.889 3 N -0.513 5.513 4 C 0.142 3.858 5 C -0.081 4.081 6 C 0.566 3.434 7 O -0.546 6.546 8 O -0.488 6.488 9 N -0.515 5.515 10 C 0.137 3.863 11 C -0.095 4.095 12 C -0.004 4.004 13 C -0.537 4.537 14 H 0.026 0.974 15 C 0.005 3.995 16 N -0.950 5.950 17 Si 0.954 3.046 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.246 1.246 21 C 0.633 3.367 22 O -0.605 6.605 23 H 0.078 0.922 24 H 0.100 0.900 25 H 0.031 0.969 26 H 0.143 0.857 27 H 0.079 0.921 28 H 0.257 0.743 29 H 0.440 0.560 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.046 0.954 33 H 0.035 0.965 34 H 0.027 0.973 35 H 0.022 0.978 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.416 -10.888 -19.135 29.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.008 4.008 3 N -0.228 5.228 4 C 0.011 3.989 5 C -0.185 4.185 6 C 0.411 3.589 7 O -0.438 6.438 8 O -0.301 6.301 9 N -0.235 5.235 10 C 0.015 3.985 11 C -0.134 4.134 12 C -0.042 4.042 13 C -0.574 4.574 14 H 0.044 0.956 15 C -0.192 4.192 16 N -0.591 5.591 17 Si 0.776 3.224 18 H -0.190 1.190 19 H -0.203 1.203 20 H -0.169 1.169 21 C 0.336 3.664 22 O -0.486 6.486 23 H 0.097 0.903 24 H 0.119 0.881 25 H 0.050 0.950 26 H 0.161 0.839 27 H 0.098 0.902 28 H 0.272 0.728 29 H 0.303 0.697 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.040 0.960 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.401 -11.153 -17.829 28.613 hybrid contribution 0.655 1.221 0.609 1.513 sum -18.747 -9.932 -17.220 27.324 Atomic orbital electron populations 1.22152 0.93415 1.04423 1.02287 1.22137 0.96115 0.76174 1.06364 1.45593 1.56706 1.15214 1.05285 1.23103 0.94289 0.86652 0.94869 1.18587 1.20121 0.97166 0.82642 1.18951 0.73473 0.84669 0.81836 1.91014 1.45737 1.30878 1.76149 1.84416 1.80943 1.48858 1.15924 1.45475 1.59003 1.13450 1.05596 1.21707 0.95543 0.87725 0.93485 1.21510 0.94051 0.98695 0.99099 1.19405 0.94569 0.95044 0.95210 1.21388 0.94295 1.11580 1.30179 0.95574 1.26044 0.96111 1.00814 0.96185 1.70068 1.12276 1.37680 1.39058 0.85608 0.79237 0.78016 0.79535 1.18964 1.20331 1.16905 1.16455 0.83050 0.81448 0.85464 1.91001 1.63847 1.75253 1.18478 0.90302 0.88142 0.94951 0.83947 0.90247 0.72757 0.69706 0.89823 0.87744 0.93490 0.94566 0.95470 0.96007 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 10.24 71.98 0.74 -0.94 16 2 C 0.11 1.36 6.70 86.38 0.58 1.94 16 3 N -0.51 -10.56 2.72 -656.10 -1.78 -12.35 16 4 C 0.14 2.13 11.20 83.21 0.93 3.06 16 5 C -0.08 -1.98 6.88 39.32 0.27 -1.71 16 6 C 0.57 13.40 8.30 69.97 0.58 13.98 16 7 O -0.55 -18.10 15.61 19.43 0.30 -17.79 16 8 O -0.49 -6.02 13.24 -58.13 -0.77 -6.79 16 9 N -0.51 -17.15 2.81 -643.70 -1.81 -18.96 16 10 C 0.14 5.24 5.55 86.38 0.48 5.72 16 11 C -0.09 -4.40 5.48 30.60 0.17 -4.23 16 12 C 0.00 -0.22 4.04 29.85 0.12 -0.10 16 13 C -0.54 -33.70 9.66 25.60 0.25 -33.45 16 14 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 15 C 0.01 0.33 5.47 84.65 0.46 0.79 16 16 N -0.95 -62.50 13.96 21.45 0.30 -62.20 16 17 Si 0.95 46.77 27.47 68.60 1.88 48.65 16 18 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 20 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 21 C 0.63 21.08 8.49 179.11 1.52 22.60 16 22 O -0.61 -25.41 17.58 -4.44 -0.08 -25.49 16 23 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 25 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.08 1.30 8.04 -2.39 -0.02 1.28 16 28 H 0.26 0.63 8.06 -2.91 -0.02 0.61 16 29 H 0.44 1.94 9.11 -74.06 -0.67 1.26 16 30 H 0.08 3.20 8.08 -2.39 -0.02 3.18 16 31 H 0.10 3.89 6.43 -2.38 -0.02 3.87 16 32 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.03 1.38 7.20 -2.39 -0.02 1.36 16 35 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16 36 H 0.27 16.30 8.31 -92.70 -0.77 15.52 16 Total: -1.00 -90.55 315.79 4.51 -86.04 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: 0.37 Total: 1.23 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 6.10 Total: 7.65 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -3.30 Total: -93.50 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -0.54 Total: -50.07 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.88 Total: 48.65 kcal Total: -90.55 4.51 -86.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711257451.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.305 kcal (2) G-P(sol) polarization free energy of solvation -90.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds