Wall clock time and date at job start Mon Mar 30 2020 04:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31016 * 1 3 3 Si 1.86801 * 119.99923 * 2 1 4 4 H 1.48501 * 109.46896 * 270.00008 * 3 2 1 5 5 H 1.48497 * 109.46972 * 29.99589 * 3 2 1 6 6 H 1.48494 * 109.47103 * 150.00204 * 3 2 1 7 7 C 1.39585 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99859 * 359.97438 * 7 2 1 9 9 N 1.36116 * 119.99927 * 180.02562 * 7 2 1 10 10 C 1.34774 * 120.00147 * 180.02562 * 9 7 2 11 11 O 1.21501 * 119.99709 * 359.97438 * 10 9 7 12 12 C 1.48830 * 119.99837 * 179.97438 * 10 9 7 13 13 O 1.21435 * 120.00360 * 359.72124 * 12 10 9 14 14 N 1.34784 * 119.99829 * 179.97438 * 12 10 9 15 15 C 1.47027 * 125.70472 * 179.72559 * 14 12 10 16 16 C 1.54091 * 107.60745 * 182.26269 * 15 14 12 17 17 H 1.08990 * 112.96373 * 258.27899 * 16 15 14 18 18 C 1.53908 * 109.01088 * 131.87654 * 16 15 14 19 19 H 1.09003 * 109.91072 * 152.79111 * 18 16 15 20 20 O 1.42898 * 109.91821 * 31.70809 * 18 16 15 21 21 C 1.53719 * 107.08617 * 272.15171 * 18 16 15 22 22 C 1.54105 * 106.66946 * 0.88977 * 21 18 16 23 23 C 1.56243 * 103.00262 * 20.71216 * 16 15 14 24 24 H 1.09001 * 114.09615 * 201.85824 * 23 16 15 25 25 C 1.47351 * 125.69973 * 359.41404 * 14 12 10 26 26 H 0.97000 * 120.00289 * 0.02562 * 1 2 3 27 27 H 0.97004 * 119.99818 * 359.97438 * 9 7 2 28 28 H 1.09004 * 109.82440 * 301.78506 * 15 14 12 29 29 H 1.08999 * 109.82981 * 62.73989 * 15 14 12 30 30 H 0.96702 * 114.00596 * 179.97438 * 20 18 16 31 31 H 1.09000 * 110.02144 * 120.19310 * 21 18 16 32 32 H 1.09005 * 110.01962 * 241.58774 * 21 18 16 33 33 H 1.09000 * 110.38752 * 95.40402 * 22 21 18 34 34 H 1.09000 * 110.38627 * 217.66268 * 22 21 18 35 35 H 1.09000 * 110.31222 * 274.09986 * 25 14 12 36 36 H 1.09005 * 110.31116 * 36.27063 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 2.4916 2.0464 -1.4001 5 1 1.4415 2.6527 0.6999 6 1 3.5417 1.4402 0.7000 7 6 2.0081 -1.2089 -0.0005 8 1 1.4680 -2.1441 -0.0005 9 7 3.3692 -1.2089 0.0000 10 6 4.0431 -2.3760 -0.0011 11 8 3.4356 -3.4282 -0.0020 12 6 5.5314 -2.3760 -0.0011 13 8 6.1386 -1.3243 -0.0052 14 7 6.2054 -3.5432 -0.0016 15 6 7.6684 -3.6893 -0.0074 16 6 7.9861 -5.1961 -0.0637 17 1 8.2735 -5.6066 0.9042 18 6 9.0397 -5.4457 -1.1575 19 1 9.6191 -6.3374 -0.9182 20 8 9.9078 -4.3157 -1.2642 21 6 8.2798 -5.6537 -2.4775 22 6 6.7809 -5.5019 -2.1534 23 6 6.6651 -5.8131 -0.6253 24 1 6.5364 -6.8714 -0.3980 25 6 5.5991 -4.8862 0.0101 26 1 -0.4850 0.8400 -0.0004 27 1 3.8542 -0.3688 0.0004 28 1 8.0863 -3.1903 -0.8817 29 1 8.0867 -3.2570 0.9015 30 1 10.5958 -4.4103 -1.9371 31 1 8.5824 -4.9004 -3.2049 32 1 8.4778 -6.6516 -2.8688 33 1 6.4496 -4.4837 -2.3572 34 1 6.1932 -6.2146 -2.7320 35 1 5.3858 -5.1962 1.0330 36 1 4.6869 -4.8947 -0.5866 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712302101.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:21 Heat of formation + Delta-G solvation = -108.204039 kcal Electronic energy + Delta-G solvation = -21026.668491 eV Core-core repulsion = 17704.013726 eV Total energy + Delta-G solvation = -3322.654764 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.61719 -38.99747 -37.21013 -36.32667 -34.40194 -33.48465 -31.86812 -29.90796 -29.23129 -26.38590 -25.55220 -23.87560 -21.54202 -20.68844 -19.60735 -19.27704 -18.42853 -17.24883 -16.70233 -16.12164 -16.05120 -15.17336 -15.10729 -14.81349 -13.97460 -13.72164 -13.49501 -13.03572 -12.96963 -12.73474 -12.51208 -12.38007 -12.37222 -12.25373 -11.56355 -11.26534 -11.02393 -10.87097 -10.78735 -10.64375 -10.56161 -10.32190 -10.08791 -10.01663 -9.74533 -8.42025 -8.34681 -8.19460 -6.56846 -3.98426 2.34776 3.06069 3.09344 3.12831 3.19808 3.89065 3.97872 4.16719 4.21809 4.38472 4.54398 4.75026 5.02260 5.07349 5.14154 5.17142 5.24146 5.33656 5.38730 5.52526 5.66585 5.70036 5.85389 5.94346 6.01790 6.11279 6.21489 6.28355 6.31186 6.65763 7.29099 7.45124 7.76326 7.91263 8.23426 8.53724 8.77095 9.21669 9.63990 10.53266 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.035968 B = 0.004790 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.275154 B = 5843.554084 C = 6249.081972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.053 3.947 3 Si 0.874 3.126 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.308 4.308 8 H 0.128 0.872 9 N -0.528 5.528 10 C 0.409 3.591 11 O -0.573 6.573 12 C 0.526 3.474 13 O -0.550 6.550 14 N -0.598 5.598 15 C 0.122 3.878 16 C -0.099 4.099 17 H 0.096 0.904 18 C 0.109 3.891 19 H 0.060 0.940 20 O -0.561 6.561 21 C -0.155 4.155 22 C -0.116 4.116 23 C -0.105 4.105 24 H 0.107 0.893 25 C 0.108 3.892 26 H 0.281 0.719 27 H 0.383 0.617 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.376 0.624 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.821 -10.895 -3.194 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.155 4.155 3 Si 0.699 3.301 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.438 4.438 8 H 0.145 0.855 9 N -0.165 5.165 10 C 0.194 3.806 11 O -0.459 6.459 12 C 0.313 3.687 13 O -0.428 6.428 14 N -0.333 5.333 15 C -0.001 4.001 16 C -0.118 4.118 17 H 0.115 0.885 18 C 0.050 3.950 19 H 0.078 0.922 20 O -0.367 6.367 21 C -0.193 4.193 22 C -0.153 4.153 23 C -0.124 4.124 24 H 0.125 0.875 25 C -0.014 4.014 26 H 0.092 0.908 27 H 0.218 0.782 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.223 0.777 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 16.111 -10.574 -2.722 19.463 hybrid contribution 0.973 1.043 -0.388 1.478 sum 17.084 -9.532 -3.110 19.809 Atomic orbital electron populations 1.69440 1.06087 1.28593 1.44690 1.25213 0.95524 0.98536 0.96227 0.86695 0.80468 0.83122 0.79806 1.18906 1.19538 1.18435 1.19543 0.79069 0.97053 1.48098 0.85488 1.41817 1.07564 1.06864 1.60264 1.18754 0.86321 0.85243 0.90280 1.90549 1.68672 1.30010 1.56708 1.20359 0.89481 0.82181 0.76720 1.90682 1.70869 1.30642 1.50618 1.48141 1.06628 1.06130 1.72421 1.21726 0.80370 0.95123 1.02848 1.22970 0.94401 0.96086 0.98321 0.88527 1.22279 0.90407 0.88086 0.94218 0.92247 1.86589 1.46438 1.41605 1.62077 1.22840 0.96707 1.01999 0.97761 1.22552 0.95177 1.02722 0.94862 1.23709 0.93871 0.99462 0.95384 0.87511 1.22516 0.97075 0.80154 1.01689 0.90822 0.78178 0.89891 0.91996 0.77726 0.90860 0.91304 0.90794 0.91190 0.91449 0.87030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.82 13.94 55.53 0.77 -23.05 16 2 C 0.05 1.43 5.51 -17.40 -0.10 1.33 16 3 Si 0.87 19.69 27.74 -169.99 -4.72 14.98 16 4 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 6 H -0.26 -5.73 6.53 56.52 0.37 -5.36 16 7 C -0.31 -8.67 10.16 -15.15 -0.15 -8.82 16 8 H 0.13 3.95 7.36 -52.49 -0.39 3.56 16 9 N -0.53 -13.63 5.06 -11.59 -0.06 -13.69 16 10 C 0.41 10.14 7.78 -11.88 -0.09 10.05 16 11 O -0.57 -14.87 13.30 5.37 0.07 -14.80 16 12 C 0.53 11.66 7.89 -11.87 -0.09 11.56 16 13 O -0.55 -13.08 16.80 5.42 0.09 -12.99 16 14 N -0.60 -10.81 2.85 -171.46 -0.49 -11.30 16 15 C 0.12 1.85 5.41 -3.18 -0.02 1.83 16 16 C -0.10 -1.10 3.94 -87.84 -0.35 -1.45 16 17 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 18 C 0.11 1.00 3.94 -25.88 -0.10 0.90 16 19 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 20 O -0.56 -5.55 11.39 -35.23 -0.40 -5.95 16 21 C -0.16 -1.37 6.60 -25.78 -0.17 -1.54 16 22 C -0.12 -1.29 5.94 -24.34 -0.14 -1.44 16 23 C -0.11 -1.17 4.37 -86.07 -0.38 -1.55 16 24 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 25 C 0.11 1.68 5.40 -2.58 -0.01 1.66 16 26 H 0.28 7.19 8.30 -40.82 -0.34 6.85 16 27 H 0.38 9.41 5.22 -40.82 -0.21 9.20 16 28 H 0.08 1.36 6.65 -51.93 -0.35 1.01 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.38 2.06 9.11 45.56 0.42 2.47 16 31 H 0.07 0.66 7.95 -51.93 -0.41 0.25 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 1.05 7.35 -51.93 -0.38 0.66 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.11 2.00 6.05 -51.93 -0.31 1.68 16 LS Contribution 293.74 15.07 4.43 4.43 Total: -1.00 -32.26 293.74 -5.67 -37.93 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -3.77 Total: 11.91 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: -1.61 Total: 12.55 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.23 Total: -48.04 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.24 Total: -33.75 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.72 Total: 14.98 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.26 -5.67 -37.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712302101.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.277 kcal (2) G-P(sol) polarization free energy of solvation -32.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds