Wall clock time and date at job start Mon Mar 30 2020 04:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31016 * 1 3 3 Si 1.86801 * 119.99923 * 2 1 4 4 H 1.48501 * 109.46896 * 270.00008 * 3 2 1 5 5 H 1.48497 * 109.46972 * 29.99589 * 3 2 1 6 6 H 1.48494 * 109.47103 * 150.00204 * 3 2 1 7 7 C 1.39585 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99859 * 359.97438 * 7 2 1 9 9 N 1.36116 * 119.99927 * 180.02562 * 7 2 1 10 10 C 1.34774 * 120.00147 * 180.02562 * 9 7 2 11 11 O 1.21501 * 119.99709 * 359.97438 * 10 9 7 12 12 C 1.48830 * 119.99837 * 179.97438 * 10 9 7 13 13 O 1.21435 * 120.00360 * 359.72124 * 12 10 9 14 14 N 1.34784 * 119.99829 * 179.97438 * 12 10 9 15 15 C 1.47027 * 125.70472 * 179.72559 * 14 12 10 16 16 C 1.54091 * 107.60745 * 182.26269 * 15 14 12 17 17 H 1.08990 * 112.96373 * 258.27899 * 16 15 14 18 18 C 1.53908 * 109.01088 * 131.87654 * 16 15 14 19 19 H 1.09003 * 109.91072 * 152.79111 * 18 16 15 20 20 O 1.42898 * 109.91821 * 31.70809 * 18 16 15 21 21 C 1.53719 * 107.08617 * 272.15171 * 18 16 15 22 22 C 1.54105 * 106.66946 * 0.88977 * 21 18 16 23 23 C 1.56243 * 103.00262 * 20.71216 * 16 15 14 24 24 H 1.09001 * 114.09615 * 201.85824 * 23 16 15 25 25 C 1.47351 * 125.69973 * 359.41404 * 14 12 10 26 26 H 0.97000 * 120.00289 * 0.02562 * 1 2 3 27 27 H 0.97004 * 119.99818 * 359.97438 * 9 7 2 28 28 H 1.09004 * 109.82440 * 301.78506 * 15 14 12 29 29 H 1.08999 * 109.82981 * 62.73989 * 15 14 12 30 30 H 0.96702 * 114.00596 * 179.97438 * 20 18 16 31 31 H 1.09000 * 110.02144 * 120.19310 * 21 18 16 32 32 H 1.09005 * 110.01962 * 241.58774 * 21 18 16 33 33 H 1.09000 * 110.38752 * 95.40402 * 22 21 18 34 34 H 1.09000 * 110.38627 * 217.66268 * 22 21 18 35 35 H 1.09000 * 110.31222 * 274.09986 * 25 14 12 36 36 H 1.09005 * 110.31116 * 36.27063 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 2.4916 2.0464 -1.4001 5 1 1.4415 2.6527 0.6999 6 1 3.5417 1.4402 0.7000 7 6 2.0081 -1.2089 -0.0005 8 1 1.4680 -2.1441 -0.0005 9 7 3.3692 -1.2089 0.0000 10 6 4.0431 -2.3760 -0.0011 11 8 3.4356 -3.4282 -0.0020 12 6 5.5314 -2.3760 -0.0011 13 8 6.1386 -1.3243 -0.0052 14 7 6.2054 -3.5432 -0.0016 15 6 7.6684 -3.6893 -0.0074 16 6 7.9861 -5.1961 -0.0637 17 1 8.2735 -5.6066 0.9042 18 6 9.0397 -5.4457 -1.1575 19 1 9.6191 -6.3374 -0.9182 20 8 9.9078 -4.3157 -1.2642 21 6 8.2798 -5.6537 -2.4775 22 6 6.7809 -5.5019 -2.1534 23 6 6.6651 -5.8131 -0.6253 24 1 6.5364 -6.8714 -0.3980 25 6 5.5991 -4.8862 0.0101 26 1 -0.4850 0.8400 -0.0004 27 1 3.8542 -0.3688 0.0004 28 1 8.0863 -3.1903 -0.8817 29 1 8.0867 -3.2570 0.9015 30 1 10.5958 -4.4103 -1.9371 31 1 8.5824 -4.9004 -3.2049 32 1 8.4778 -6.6516 -2.8688 33 1 6.4496 -4.4837 -2.3572 34 1 6.1932 -6.2146 -2.7320 35 1 5.3858 -5.1962 1.0330 36 1 4.6869 -4.8947 -0.5866 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712302101.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:21 Heat of formation + Delta-G solvation = -134.138543 kcal Electronic energy + Delta-G solvation = -21027.793095 eV Core-core repulsion = 17704.013726 eV Total energy + Delta-G solvation = -3323.779369 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.94626 -40.55159 -39.01672 -37.42019 -36.30624 -34.72749 -33.93833 -31.00295 -30.32196 -28.13558 -26.82230 -25.34564 -23.15608 -21.54583 -21.30013 -20.59183 -20.18626 -18.33317 -17.96042 -17.91138 -17.31468 -16.97443 -16.53966 -15.95681 -15.59606 -15.17763 -15.10300 -14.66078 -14.41267 -14.27828 -13.87322 -13.74840 -13.72015 -13.16493 -13.11013 -12.58219 -12.55935 -12.41697 -12.04378 -11.93269 -11.79918 -11.73864 -11.54529 -11.29629 -10.74690 -10.49355 -10.22233 -9.77389 -8.64338 -6.17553 0.47992 1.26477 1.29993 1.36087 1.57583 2.07933 2.23706 2.86328 3.03811 3.15611 3.30178 3.55495 3.70321 3.87274 4.16442 4.22353 4.26446 4.28205 4.47133 4.58755 4.66389 4.78519 4.89923 4.92605 4.98874 5.13409 5.14706 5.19947 5.25954 5.36028 5.41023 5.72344 6.12566 6.27704 6.53831 6.80628 6.99025 7.12327 7.59586 8.50088 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.035968 B = 0.004790 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.275154 B = 5843.554084 C = 6249.081972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.014 3.986 3 Si 0.944 3.056 4 H -0.252 1.252 5 H -0.254 1.254 6 H -0.253 1.253 7 C -0.337 4.337 8 H 0.081 0.919 9 N -0.534 5.534 10 C 0.411 3.589 11 O -0.588 6.588 12 C 0.525 3.475 13 O -0.570 6.570 14 N -0.588 5.588 15 C 0.117 3.883 16 C -0.093 4.093 17 H 0.120 0.880 18 C 0.113 3.887 19 H 0.094 0.906 20 O -0.584 6.584 21 C -0.148 4.148 22 C -0.122 4.122 23 C -0.088 4.088 24 H 0.146 0.854 25 C 0.098 3.902 26 H 0.291 0.709 27 H 0.391 0.609 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.395 0.605 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.033 0.967 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.732 -11.908 -3.334 23.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.191 4.191 3 Si 0.764 3.236 4 H -0.176 1.176 5 H -0.178 1.178 6 H -0.177 1.177 7 C -0.466 4.466 8 H 0.099 0.901 9 N -0.172 5.172 10 C 0.196 3.804 11 O -0.475 6.475 12 C 0.310 3.690 13 O -0.450 6.450 14 N -0.321 5.321 15 C -0.004 4.004 16 C -0.112 4.112 17 H 0.138 0.862 18 C 0.054 3.946 19 H 0.112 0.888 20 O -0.393 6.393 21 C -0.185 4.185 22 C -0.159 4.159 23 C -0.107 4.107 24 H 0.164 0.836 25 C -0.024 4.024 26 H 0.101 0.899 27 H 0.227 0.773 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.245 0.755 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.052 0.948 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 19.035 -11.638 -2.876 22.495 hybrid contribution 0.086 1.191 -0.361 1.248 sum 19.121 -10.446 -3.237 22.027 Atomic orbital electron populations 1.69536 1.07721 1.30329 1.45176 1.26008 0.96333 1.01974 0.94808 0.85646 0.79295 0.78040 0.80599 1.17622 1.17763 1.17728 1.19171 0.80145 0.96147 1.51154 0.90098 1.41709 1.06742 1.07507 1.61283 1.19434 0.87877 0.84763 0.88373 1.90542 1.69785 1.30640 1.56548 1.19769 0.88141 0.83387 0.77703 1.90660 1.70655 1.31553 1.52179 1.48255 1.08375 1.05875 1.69581 1.21963 0.77782 0.98652 1.02029 1.23088 0.95131 0.92429 1.00537 0.86224 1.22324 0.90129 0.88991 0.93109 0.88817 1.86535 1.47292 1.42354 1.63134 1.22825 0.94368 1.03529 0.97822 1.22571 0.97464 1.00666 0.95237 1.23747 0.91834 1.00292 0.94788 0.83608 1.22684 0.97749 0.79929 1.02051 0.89888 0.77341 0.91054 0.92444 0.75504 0.91421 0.88404 0.94796 0.90023 0.90856 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.15 13.94 21.77 0.30 -50.85 16 2 C 0.01 0.77 5.51 85.14 0.47 1.24 16 3 Si 0.94 40.60 27.74 68.60 1.90 42.51 16 4 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 5 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 6 H -0.25 -10.54 6.53 99.48 0.65 -9.89 16 7 C -0.34 -19.87 10.16 84.35 0.86 -19.01 16 8 H 0.08 5.41 7.36 -2.91 -0.02 5.39 16 9 N -0.53 -28.48 5.06 -308.88 -1.56 -30.04 16 10 C 0.41 21.13 7.78 87.08 0.68 21.80 16 11 O -0.59 -32.01 13.30 -3.72 -0.05 -32.06 16 12 C 0.53 23.73 7.89 87.08 0.69 24.42 16 13 O -0.57 -27.37 16.80 -3.51 -0.06 -27.43 16 14 N -0.59 -21.28 2.85 -814.71 -2.32 -23.60 16 15 C 0.12 3.41 5.41 86.65 0.47 3.88 16 16 C -0.09 -1.76 3.94 -8.99 -0.04 -1.79 16 17 H 0.12 1.78 8.14 -2.39 -0.02 1.77 16 18 C 0.11 1.59 3.94 31.14 0.12 1.71 16 19 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 20 O -0.58 -9.77 11.39 -148.98 -1.70 -11.47 16 21 C -0.15 -2.09 6.60 31.21 0.21 -1.88 16 22 C -0.12 -2.48 5.94 32.14 0.19 -2.29 16 23 C -0.09 -1.71 4.37 -7.84 -0.03 -1.74 16 24 H 0.15 1.82 8.14 -2.39 -0.02 1.80 16 25 C 0.10 2.98 5.40 86.86 0.47 3.45 16 26 H 0.29 15.05 8.30 -92.71 -0.77 14.28 16 27 H 0.39 19.41 5.22 -92.71 -0.48 18.92 16 28 H 0.07 2.29 6.65 -2.38 -0.02 2.27 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.39 3.07 9.11 -74.06 -0.67 2.39 16 31 H 0.07 1.05 7.95 -2.39 -0.02 1.03 16 32 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.03 0.96 7.35 -2.39 -0.02 0.94 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.08 3.04 6.05 -2.38 -0.01 3.02 16 Total: -1.00 -73.96 293.74 0.51 -73.45 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: -0.09 Total: 29.69 kcal Atomic # 6 Polarization: 25.71 SS G_CDS: 4.08 Total: 29.79 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -3.58 Total: -104.48 kcal Atomic # 8 Polarization: -69.16 SS G_CDS: -1.80 Total: -70.96 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 1.90 Total: 42.51 kcal Total: -73.96 0.51 -73.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712302101.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.688 kcal (2) G-P(sol) polarization free energy of solvation -73.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds