Wall clock time and date at job start Mon Mar 30 2020 06:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.47129 * 2 1 4 4 C 1.34863 * 116.99691 * 180.02562 * 3 2 1 5 5 O 1.21607 * 120.00075 * 0.02562 * 4 3 2 6 6 C 1.46622 * 119.99456 * 180.02562 * 4 3 2 7 7 N 1.34677 * 126.00199 * 0.02562 * 6 4 3 8 8 N 1.28654 * 109.74123 * 179.97438 * 7 6 4 9 9 N 1.40131 * 108.94427 * 0.02562 * 8 7 6 10 10 C 1.46496 * 126.54332 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.47688 * 180.02562 * 10 9 8 12 12 C 1.53007 * 109.47016 * 300.02034 * 10 9 8 13 13 C 1.53004 * 109.47129 * 60.01716 * 10 9 8 14 14 C 1.50701 * 109.47134 * 175.00172 * 13 10 9 15 15 H 1.08004 * 119.99589 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00095 * 179.97438 * 14 13 10 17 17 N 1.31519 * 119.99791 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00195 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46924 * 90.00366 * 18 16 14 20 20 H 1.48501 * 109.47219 * 210.00447 * 18 16 14 21 21 H 1.48503 * 109.46869 * 330.00492 * 18 16 14 22 22 C 1.35381 * 106.91998 * 359.74905 * 9 8 7 23 23 N 1.37908 * 126.80294 * 180.23532 * 22 9 8 24 24 H 1.09004 * 109.46930 * 299.99887 * 1 2 3 25 25 H 1.09004 * 109.47059 * 59.99488 * 1 2 3 26 26 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46930 * 240.00113 * 2 1 3 28 28 H 1.09000 * 109.47312 * 120.00057 * 2 1 3 29 29 H 1.08999 * 109.46714 * 59.99622 * 12 10 9 30 30 H 1.08999 * 109.47115 * 179.97438 * 12 10 9 31 31 H 1.08995 * 109.47122 * 300.00138 * 12 10 9 32 32 H 1.08997 * 109.47363 * 295.00639 * 13 10 9 33 33 H 1.09000 * 109.46645 * 55.00694 * 13 10 9 34 34 H 0.96998 * 119.99561 * 179.97438 * 17 16 14 35 35 H 0.97002 * 119.99936 * 180.20031 * 23 22 9 36 36 H 0.96995 * 120.00188 * 0.20231 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3511 1.5456 -0.0005 5 8 4.0918 0.5812 -0.0015 6 6 3.9114 2.9006 0.0000 7 7 3.2072 4.0485 0.0015 8 7 4.0121 5.0521 0.0021 9 7 5.3307 4.5778 0.0003 10 6 6.5498 5.3900 -0.0002 11 1 7.4220 4.7363 -0.0021 12 6 6.5729 6.2745 -1.2485 13 6 6.5759 6.2717 1.2500 14 6 7.8848 7.0158 1.3128 15 1 8.6240 6.8744 0.5381 16 6 8.1383 7.8779 2.3584 17 7 7.2379 8.0505 3.3014 18 14 9.7605 8.8009 2.4358 19 1 9.6264 10.0980 1.7254 20 1 10.1218 9.0487 3.8547 21 1 10.8229 7.9897 1.7889 22 6 5.2630 3.2257 0.0044 23 7 6.3245 2.3454 0.0089 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.7007 6.9282 -1.2467 30 1 7.4798 6.8791 -1.2487 31 1 6.5543 5.6465 -2.1391 32 1 5.7535 6.9858 1.2082 33 1 6.4701 5.6472 2.1371 34 1 7.4164 8.6567 4.0372 35 1 6.1616 1.3891 0.0086 36 1 7.2341 2.6824 0.0124 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713475377.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:55 Heat of formation + Delta-G solvation = -10.078868 kcal Electronic energy + Delta-G solvation = -20242.517371 eV Core-core repulsion = 16956.410385 eV Total energy + Delta-G solvation = -3286.106987 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.72411 -39.92579 -36.55953 -36.09384 -34.79570 -32.76988 -31.82407 -30.50230 -29.19987 -27.24920 -24.58264 -24.18276 -22.84814 -22.24502 -20.76549 -19.94486 -17.49730 -17.45405 -16.73700 -16.56985 -16.34392 -16.23356 -15.45313 -14.66534 -14.37033 -13.98122 -13.75502 -13.43888 -12.88727 -12.68494 -12.17740 -11.98516 -11.87889 -11.69959 -11.58784 -11.57445 -11.21613 -11.10279 -10.88300 -10.69939 -10.55357 -10.53460 -10.33261 -10.09604 -9.42132 -9.10749 -8.55239 -7.97797 -6.18782 -4.25355 1.60402 1.99131 2.24082 2.85815 3.20990 3.28206 3.29200 3.33186 3.70007 4.29952 4.58156 4.81469 4.83716 4.91488 4.97945 5.16191 5.17604 5.47912 5.57372 5.66936 5.72775 5.79869 5.84717 5.98563 6.21602 6.43403 6.46311 6.54357 6.71591 7.21765 7.37874 7.45652 7.51896 7.76836 7.85715 8.08367 8.54457 8.79179 9.39975 10.92094 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.038392 B = 0.003815 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.140765 B = 7336.811257 C = 7452.865489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.339 6.339 4 C 0.573 3.427 5 O -0.536 6.536 6 C -0.185 4.185 7 N -0.173 5.173 8 N -0.052 5.052 9 N -0.376 5.376 10 C 0.150 3.850 11 H 0.089 0.911 12 C -0.147 4.147 13 C 0.022 3.978 14 C -0.529 4.529 15 H 0.061 0.939 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.897 3.103 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.407 3.593 23 N -0.819 5.819 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.022 0.978 34 H 0.264 0.736 35 H 0.429 0.571 36 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.317 -13.747 -7.665 16.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.255 6.255 4 C 0.419 3.581 5 O -0.426 6.426 6 C -0.325 4.325 7 N -0.050 5.050 8 N -0.034 5.034 9 N -0.169 5.169 10 C 0.051 3.949 11 H 0.107 0.893 12 C -0.204 4.204 13 C -0.016 4.016 14 C -0.568 4.568 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.724 3.276 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.198 1.198 22 C 0.164 3.836 23 N -0.371 5.371 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.265 0.735 36 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -6.070 -12.696 -7.498 15.945 hybrid contribution 2.022 -0.635 0.257 2.135 sum -4.048 -13.331 -7.241 15.701 Atomic orbital electron populations 1.21796 0.92685 1.02654 1.03800 1.23013 0.95358 0.80389 1.02401 1.86678 1.23152 1.31551 1.84095 1.19128 0.80545 0.86898 0.71552 1.90749 1.60491 1.41525 1.49810 1.19372 0.87777 0.92079 1.33280 1.74616 1.26221 0.96153 1.07981 1.81948 0.81978 1.15558 1.23886 1.50914 1.09918 1.02080 1.53955 1.22101 0.78895 0.92662 1.01249 0.89318 1.22028 1.04726 0.99549 0.94141 1.19449 0.98974 0.94134 0.89054 1.20965 1.00979 1.25850 1.09000 0.92084 1.24997 0.97017 0.96606 0.95403 1.69974 1.34230 1.36375 1.11683 0.86518 0.83395 0.80233 0.77414 1.20417 1.21107 1.19789 1.18441 0.89357 0.83602 0.92164 1.41661 1.05191 1.08518 1.81736 0.91323 0.91399 0.90428 0.91361 0.91299 0.91254 0.89226 0.94087 0.94356 0.96015 0.92586 0.73549 0.76144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 37.16 0.38 -0.85 16 2 C 0.06 0.67 6.20 37.16 0.23 0.91 16 3 O -0.34 -5.09 10.23 -40.94 -0.42 -5.51 16 4 C 0.57 9.38 7.93 34.11 0.27 9.65 16 5 O -0.54 -8.58 14.88 -19.35 -0.29 -8.87 16 6 C -0.19 -3.33 7.09 -82.95 -0.59 -3.92 16 7 N -0.17 -3.42 12.38 33.14 0.41 -3.01 16 8 N -0.05 -1.07 13.62 60.35 0.82 -0.25 16 9 N -0.38 -7.05 3.30 -53.52 -0.18 -7.23 16 10 C 0.15 2.81 3.14 -67.93 -0.21 2.59 16 11 H 0.09 1.45 6.92 -51.93 -0.36 1.09 16 12 C -0.15 -2.49 9.28 37.16 0.34 -2.14 16 13 C 0.02 0.52 4.72 -27.88 -0.13 0.39 16 14 C -0.53 -13.44 8.41 -34.44 -0.29 -13.73 16 15 H 0.06 1.44 7.06 -52.48 -0.37 1.07 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -25.41 13.29 55.43 0.74 -24.68 16 18 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 22 C 0.41 6.87 8.05 -153.51 -1.24 5.64 16 23 N -0.82 -10.48 9.02 31.42 0.28 -10.20 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.09 1.51 6.95 -51.93 -0.36 1.15 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.43 5.07 6.98 -40.82 -0.28 4.79 16 36 H 0.41 4.36 7.75 -40.82 -0.32 4.04 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -30.66 315.37 -4.86 -35.51 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.63 Total: 4.14 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.33 Total: 0.12 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 2.08 Total: -45.36 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.71 Total: -14.38 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.66 -4.86 -35.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713475377.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.433 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds