Wall clock time and date at job start Mon Mar 30 2020 06:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.47129 * 2 1 4 4 C 1.34863 * 116.99691 * 180.02562 * 3 2 1 5 5 O 1.21607 * 120.00075 * 0.02562 * 4 3 2 6 6 C 1.46622 * 119.99456 * 180.02562 * 4 3 2 7 7 N 1.34677 * 126.00199 * 0.02562 * 6 4 3 8 8 N 1.28654 * 109.74123 * 179.97438 * 7 6 4 9 9 N 1.40131 * 108.94427 * 0.02562 * 8 7 6 10 10 C 1.46496 * 126.54332 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.47688 * 180.02562 * 10 9 8 12 12 C 1.53007 * 109.47016 * 300.02034 * 10 9 8 13 13 C 1.53004 * 109.47129 * 60.01716 * 10 9 8 14 14 C 1.50701 * 109.47134 * 175.00172 * 13 10 9 15 15 H 1.08004 * 119.99589 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00095 * 179.97438 * 14 13 10 17 17 N 1.31519 * 119.99791 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00195 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46924 * 90.00366 * 18 16 14 20 20 H 1.48501 * 109.47219 * 210.00447 * 18 16 14 21 21 H 1.48503 * 109.46869 * 330.00492 * 18 16 14 22 22 C 1.35381 * 106.91998 * 359.74905 * 9 8 7 23 23 N 1.37908 * 126.80294 * 180.23532 * 22 9 8 24 24 H 1.09004 * 109.46930 * 299.99887 * 1 2 3 25 25 H 1.09004 * 109.47059 * 59.99488 * 1 2 3 26 26 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46930 * 240.00113 * 2 1 3 28 28 H 1.09000 * 109.47312 * 120.00057 * 2 1 3 29 29 H 1.08999 * 109.46714 * 59.99622 * 12 10 9 30 30 H 1.08999 * 109.47115 * 179.97438 * 12 10 9 31 31 H 1.08995 * 109.47122 * 300.00138 * 12 10 9 32 32 H 1.08997 * 109.47363 * 295.00639 * 13 10 9 33 33 H 1.09000 * 109.46645 * 55.00694 * 13 10 9 34 34 H 0.96998 * 119.99561 * 179.97438 * 17 16 14 35 35 H 0.97002 * 119.99936 * 180.20031 * 23 22 9 36 36 H 0.96995 * 120.00188 * 0.20231 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3511 1.5456 -0.0005 5 8 4.0918 0.5812 -0.0015 6 6 3.9114 2.9006 0.0000 7 7 3.2072 4.0485 0.0015 8 7 4.0121 5.0521 0.0021 9 7 5.3307 4.5778 0.0003 10 6 6.5498 5.3900 -0.0002 11 1 7.4220 4.7363 -0.0021 12 6 6.5729 6.2745 -1.2485 13 6 6.5759 6.2717 1.2500 14 6 7.8848 7.0158 1.3128 15 1 8.6240 6.8744 0.5381 16 6 8.1383 7.8779 2.3584 17 7 7.2379 8.0505 3.3014 18 14 9.7605 8.8009 2.4358 19 1 9.6264 10.0980 1.7254 20 1 10.1218 9.0487 3.8547 21 1 10.8229 7.9897 1.7889 22 6 5.2630 3.2257 0.0044 23 7 6.3245 2.3454 0.0089 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.7007 6.9282 -1.2467 30 1 7.4798 6.8791 -1.2487 31 1 6.5543 5.6465 -2.1391 32 1 5.7535 6.9858 1.2082 33 1 6.4701 5.6472 2.1371 34 1 7.4164 8.6567 4.0372 35 1 6.1616 1.3891 0.0086 36 1 7.2341 2.6824 0.0124 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713475377.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:51 Heat of formation + Delta-G solvation = -30.456893 kcal Electronic energy + Delta-G solvation = -20243.401029 eV Core-core repulsion = 16956.410385 eV Total energy + Delta-G solvation = -3286.990644 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -43.12992 -41.12433 -37.73781 -37.62911 -36.13606 -34.62940 -32.74209 -31.99942 -30.51026 -29.02200 -26.12819 -25.47042 -24.35616 -23.40080 -22.08222 -21.38177 -19.01720 -18.73927 -18.18112 -17.84811 -17.70195 -17.51343 -16.85395 -16.42614 -15.81411 -15.23342 -15.00137 -14.64789 -14.37863 -13.94346 -13.57265 -13.26727 -13.18417 -12.97366 -12.90719 -12.85117 -12.79566 -12.51032 -12.44145 -12.34010 -12.04960 -11.79402 -11.73124 -11.48380 -11.35747 -10.67901 -10.58215 -9.28744 -8.22122 -6.35142 0.29670 0.53100 0.89862 1.45036 1.45639 1.55911 1.70333 1.99243 2.39459 2.50685 3.13531 3.24602 3.49804 3.67558 4.06969 4.10009 4.12391 4.29420 4.30300 4.38282 4.56994 4.79080 4.90337 4.95382 4.96785 5.13462 5.17177 5.28409 5.37392 5.40894 5.52267 5.74184 5.98205 6.11615 6.43170 6.65563 6.80310 7.11831 7.35514 8.90356 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.038392 B = 0.003815 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.140765 B = 7336.811257 C = 7452.865489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.352 6.352 4 C 0.574 3.426 5 O -0.534 6.534 6 C -0.198 4.198 7 N -0.185 5.185 8 N -0.090 5.090 9 N -0.384 5.384 10 C 0.158 3.842 11 H 0.121 0.879 12 C -0.140 4.140 13 C 0.031 3.969 14 C -0.531 4.531 15 H 0.084 0.916 16 C 0.001 3.999 17 N -0.934 5.934 18 Si 0.968 3.032 19 H -0.275 1.275 20 H -0.291 1.291 21 H -0.253 1.253 22 C 0.414 3.586 23 N -0.795 5.795 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.107 0.893 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.069 0.931 32 H -0.001 1.001 33 H -0.014 1.014 34 H 0.263 0.737 35 H 0.436 0.564 36 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.832 -15.323 -8.995 18.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.268 6.268 4 C 0.419 3.581 5 O -0.425 6.425 6 C -0.339 4.339 7 N -0.060 5.060 8 N -0.072 5.072 9 N -0.177 5.177 10 C 0.059 3.941 11 H 0.138 0.862 12 C -0.198 4.198 13 C -0.007 4.007 14 C -0.569 4.569 15 H 0.102 0.898 16 C -0.197 4.197 17 N -0.573 5.573 18 Si 0.793 3.207 19 H -0.200 1.200 20 H -0.217 1.217 21 H -0.176 1.176 22 C 0.169 3.831 23 N -0.348 5.348 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.125 0.875 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.017 0.983 33 H 0.005 0.995 34 H 0.072 0.928 35 H 0.274 0.726 36 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -4.571 -14.305 -8.853 17.433 hybrid contribution 1.487 -0.284 0.677 1.658 sum -3.084 -14.589 -8.177 17.006 Atomic orbital electron populations 1.21838 0.90645 1.04465 1.03487 1.23409 0.96978 0.78492 1.03135 1.86670 1.22237 1.34227 1.83657 1.18933 0.81194 0.86243 0.71681 1.90733 1.60641 1.41199 1.49897 1.19765 0.88355 0.92471 1.33318 1.74559 1.26771 0.96792 1.07918 1.81917 0.82963 1.16292 1.25993 1.50747 1.09278 1.02771 1.54889 1.21936 0.80007 0.92906 0.99263 0.86175 1.21964 1.03984 0.99442 0.94364 1.19201 0.97349 0.93636 0.90482 1.21450 1.01539 1.24993 1.08964 0.89804 1.25994 1.00659 0.97869 0.95177 1.70142 1.36756 1.37716 1.12733 0.85392 0.79260 0.78973 0.77091 1.20031 1.21697 1.17649 1.18560 0.90059 0.83240 0.91201 1.41668 1.04909 1.08346 1.79866 0.91814 0.91531 0.87493 0.90399 0.90775 0.93144 0.88836 0.91166 0.98297 0.99519 0.92828 0.72632 0.74560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.29 71.98 0.74 -1.39 16 2 C 0.05 1.06 6.20 71.98 0.45 1.51 16 3 O -0.35 -10.30 10.23 -57.77 -0.59 -10.90 16 4 C 0.57 18.24 7.93 70.01 0.56 18.80 16 5 O -0.53 -16.19 14.88 19.49 0.29 -15.90 16 6 C -0.20 -7.02 7.09 41.08 0.29 -6.73 16 7 N -0.18 -7.43 12.38 -49.06 -0.61 -8.03 16 8 N -0.09 -3.82 13.62 37.02 0.50 -3.31 16 9 N -0.38 -14.26 3.30 -323.25 -1.07 -15.33 16 10 C 0.16 5.76 3.14 45.00 0.14 5.90 16 11 H 0.12 3.59 6.92 -2.39 -0.02 3.57 16 12 C -0.14 -4.54 9.28 71.98 0.67 -3.87 16 13 C 0.03 1.54 4.72 29.85 0.14 1.68 16 14 C -0.53 -26.72 8.41 25.60 0.22 -26.51 16 15 H 0.08 3.76 7.06 -2.91 -0.02 3.74 16 16 C 0.00 0.08 5.46 84.65 0.46 0.54 16 17 N -0.93 -55.17 13.29 21.45 0.28 -54.88 16 18 Si 0.97 41.11 29.54 68.60 2.03 43.13 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 20 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 22 C 0.41 13.47 8.05 132.49 1.07 14.54 16 23 N -0.79 -18.39 9.02 -54.51 -0.49 -18.88 16 24 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.09 2.95 6.95 -2.39 -0.02 2.93 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 34 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 35 H 0.44 9.17 6.98 -92.71 -0.65 8.52 16 36 H 0.42 7.66 7.75 -92.71 -0.72 6.94 16 Total: -1.00 -68.04 315.37 4.83 -63.21 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -0.24 Total: 16.42 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 4.73 Total: 4.47 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -1.38 Total: -100.44 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.30 Total: -26.80 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.13 kcal Total: -68.04 4.83 -63.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713475377.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.752 kcal (2) G-P(sol) polarization free energy of solvation -68.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds