Wall clock time and date at job start Mon Mar 30 2020 04:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86802 * 119.99814 * 2 1 4 4 H 1.48501 * 109.46904 * 269.99707 * 3 2 1 5 5 H 1.48500 * 109.47344 * 29.99632 * 3 2 1 6 6 H 1.48496 * 109.47108 * 150.00105 * 3 2 1 7 7 C 1.38947 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00632 * 0.02562 * 7 2 1 9 9 N 1.37101 * 120.00123 * 179.97438 * 7 2 1 10 10 C 1.34774 * 120.00220 * 179.97438 * 9 7 2 11 11 O 1.21288 * 119.99876 * 359.72630 * 10 9 7 12 12 C 1.50703 * 119.99897 * 179.72728 * 10 9 7 13 13 N 1.46902 * 109.47318 * 185.81639 * 12 10 9 14 14 C 1.48582 * 111.00024 * 176.41506 * 13 12 10 15 15 C 1.55095 * 103.33766 * 200.61751 * 14 13 12 16 16 H 1.08995 * 110.76478 * 278.54347 * 15 14 13 17 17 C 1.50700 * 110.75886 * 155.33683 * 15 14 13 18 18 O 1.20829 * 120.00634 * 327.42977 * 17 15 14 19 19 O 1.34231 * 119.99868 * 147.43095 * 17 15 14 20 20 C 1.53971 * 102.70804 * 36.85400 * 15 14 13 21 21 C 1.52291 * 121.21590 * 194.37863 * 20 15 14 22 22 C 1.52313 * 121.18105 * 122.38203 * 20 15 14 23 23 C 1.48091 * 110.99864 * 58.95076 * 13 12 10 24 24 H 0.96999 * 120.00007 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99645 * 359.73173 * 9 7 2 26 26 H 1.09003 * 109.46954 * 305.81478 * 12 10 9 27 27 H 1.09001 * 109.46901 * 65.81289 * 12 10 9 28 28 H 1.08997 * 110.65109 * 319.08572 * 14 13 12 29 29 H 1.09003 * 110.64372 * 82.16352 * 14 13 12 30 30 H 0.96696 * 117.00231 * 180.02562 * 19 17 15 31 31 H 1.09002 * 117.51946 * 356.84284 * 21 20 15 32 32 H 1.09005 * 117.51817 * 141.96196 * 21 20 15 33 33 H 1.09005 * 117.51904 * 218.08346 * 22 20 15 34 34 H 1.08999 * 117.52073 * 3.16907 * 22 20 15 35 35 H 1.08994 * 110.00994 * 265.06366 * 23 13 12 36 36 H 1.09005 * 110.00243 * 26.42356 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2034 0.0000 10 6 4.0538 -2.3706 0.0011 11 8 3.4473 -3.4209 0.0075 12 6 5.5608 -2.3706 -0.0057 13 7 6.0499 -3.7489 -0.1435 14 6 7.5322 -3.7807 -0.2405 15 6 7.8183 -5.1554 -0.8990 16 1 7.7914 -5.9528 -0.1564 17 6 9.1443 -5.1392 -1.6148 18 8 9.5398 -4.1209 -2.1312 19 8 9.8862 -6.2561 -1.6788 20 6 6.6559 -5.3007 -1.8983 21 6 6.3359 -6.6407 -2.5474 22 6 6.9151 -5.4978 -3.3862 23 6 5.5489 -4.3675 -1.3923 24 1 -0.4850 0.8400 -0.0004 25 1 3.8649 -0.3633 -0.0047 26 1 5.9203 -1.7721 -0.8428 27 1 5.9283 -1.9462 0.9286 28 1 7.8936 -2.9693 -0.8721 29 1 7.9834 -3.7280 0.7504 30 1 10.7294 -6.1967 -2.1482 31 1 6.9923 -7.4804 -2.3191 32 1 5.2852 -6.8910 -2.6944 33 1 6.2453 -4.9963 -4.0849 34 1 7.9523 -5.5850 -3.7096 35 1 4.6437 -4.9392 -1.1881 36 1 5.3436 -3.5958 -2.1343 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714578346.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:07 Heat of formation + Delta-G solvation = -82.142167 kcal Electronic energy + Delta-G solvation = -20625.634017 eV Core-core repulsion = 17304.109380 eV Total energy + Delta-G solvation = -3321.524637 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03764 -39.23788 -38.05002 -36.34705 -35.51960 -33.92533 -31.70476 -31.13682 -28.07167 -26.29763 -24.50066 -22.78319 -22.59219 -20.97875 -19.47104 -19.26655 -18.40742 -18.19392 -16.77324 -16.32644 -15.90849 -15.36309 -15.13642 -14.93373 -14.46265 -14.02266 -13.64851 -13.20958 -13.09339 -12.99950 -12.57541 -12.37892 -11.97464 -11.89154 -11.85797 -11.62511 -11.34978 -11.20479 -11.04792 -10.77128 -10.59886 -10.48434 -9.98221 -9.86345 -9.55991 -8.60270 -8.20680 -8.11509 -6.31815 -3.83289 1.92247 2.69109 3.03004 3.06965 3.15288 3.63310 3.72782 3.98025 4.10039 4.19535 4.33016 4.60226 4.75900 4.85302 5.05524 5.16942 5.20736 5.39642 5.47500 5.50535 5.60395 5.66115 5.73801 5.77281 5.79438 5.89791 5.97643 6.01767 6.21686 6.40412 6.97255 7.03178 7.57201 7.64458 8.13146 8.58988 8.94128 9.41467 9.81485 10.81208 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.034615 B = 0.004273 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.692518 B = 6550.496953 C = 6917.291459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.451 3.549 11 O -0.560 6.560 12 C 0.033 3.967 13 N -0.487 5.487 14 C 0.047 3.953 15 C -0.052 4.052 16 H 0.119 0.881 17 C 0.490 3.510 18 O -0.510 6.510 19 O -0.515 6.515 20 C -0.128 4.128 21 C -0.154 4.154 22 C -0.170 4.170 23 C 0.084 3.916 24 H 0.273 0.727 25 H 0.370 0.630 26 H 0.052 0.948 27 H 0.096 0.904 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.408 0.592 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.928 -8.476 -3.899 21.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.433 4.433 8 H 0.138 0.862 9 N -0.229 5.229 10 C 0.237 3.763 11 O -0.442 6.442 12 C -0.099 4.099 13 N -0.211 5.211 14 C -0.081 4.081 15 C -0.072 4.072 16 H 0.137 0.863 17 C 0.332 3.668 18 O -0.398 6.398 19 O -0.327 6.327 20 C -0.129 4.129 21 C -0.191 4.191 22 C -0.207 4.207 23 C -0.044 4.044 24 H 0.084 0.916 25 H 0.203 0.797 26 H 0.070 0.930 27 H 0.114 0.886 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.266 0.734 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 17.828 -9.070 -3.351 20.282 hybrid contribution 1.498 2.016 -1.008 2.706 sum 19.326 -7.055 -4.359 21.031 Atomic orbital electron populations 1.69621 1.05640 1.27513 1.49318 1.25032 0.95482 0.97964 0.97609 0.86686 0.79848 0.84074 0.78893 1.19654 1.20136 1.19433 1.19426 0.79165 0.96641 1.48102 0.86229 1.42203 1.07560 1.06120 1.67055 1.19565 0.87913 0.84634 0.84185 1.90547 1.69339 1.30740 1.53561 1.22161 0.95725 0.89706 1.02309 1.64651 1.04072 1.16833 1.35570 1.23248 0.90189 0.93953 1.00676 1.21392 0.86657 1.01724 0.97408 0.86323 1.23302 0.85998 0.80336 0.77159 1.90719 1.71591 1.33527 1.43958 1.84576 1.35840 1.39583 1.72712 1.21693 0.96455 1.01276 0.93510 1.22997 1.02697 0.91251 1.02188 1.23041 1.01907 1.03060 0.92719 1.22340 0.96423 0.96056 0.89534 0.91602 0.79683 0.93003 0.88619 0.91850 0.89085 0.73373 0.88251 0.87636 0.87933 0.89348 0.87429 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.66 13.96 55.50 0.77 -24.88 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 3 Si 0.88 19.35 27.73 -169.99 -4.71 14.64 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 7 C -0.30 -8.56 10.16 -14.93 -0.15 -8.72 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 N -0.59 -13.99 5.09 -10.96 -0.06 -14.05 16 10 C 0.45 10.16 7.39 -10.99 -0.08 10.08 16 11 O -0.56 -14.64 14.10 5.55 0.08 -14.56 16 12 C 0.03 0.55 5.30 -4.97 -0.03 0.53 16 13 N -0.49 -7.84 5.13 -231.97 -1.19 -9.03 16 14 C 0.05 0.61 5.93 -1.78 -0.01 0.60 16 15 C -0.05 -0.61 3.43 -90.16 -0.31 -0.92 16 16 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 17 C 0.49 5.45 5.79 36.01 0.21 5.65 16 18 O -0.51 -7.05 16.74 -18.75 -0.31 -7.37 16 19 O -0.52 -4.22 13.42 -39.26 -0.53 -4.75 16 20 C -0.13 -1.63 2.39 -154.52 -0.37 -2.00 16 21 C -0.15 -1.65 10.29 -27.02 -0.28 -1.93 16 22 C -0.17 -1.93 9.69 -27.01 -0.26 -2.19 16 23 C 0.08 1.35 5.15 -2.97 -0.02 1.33 16 24 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.37 7.75 5.77 -40.82 -0.24 7.51 16 26 H 0.05 0.79 8.01 -51.93 -0.42 0.38 16 27 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.06 0.85 7.08 -51.93 -0.37 0.48 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.41 1.59 9.10 45.56 0.41 2.00 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.09 0.97 6.96 -51.93 -0.36 0.61 16 35 H 0.11 1.99 7.04 -51.93 -0.37 1.62 16 36 H 0.05 0.83 7.72 -51.93 -0.40 0.43 16 LS Contribution 304.15 15.07 4.58 4.58 Total: -1.00 -33.70 304.15 -6.58 -40.28 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -3.82 Total: 11.63 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -1.39 Total: 3.50 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.47 Total: -47.96 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.76 Total: -26.67 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.64 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.70 -6.58 -40.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714578346.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.864 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds