Wall clock time and date at job start Mon Mar 30 2020 04:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86802 * 119.99814 * 2 1 4 4 H 1.48501 * 109.46904 * 269.99707 * 3 2 1 5 5 H 1.48500 * 109.47344 * 29.99632 * 3 2 1 6 6 H 1.48496 * 109.47108 * 150.00105 * 3 2 1 7 7 C 1.38947 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00632 * 0.02562 * 7 2 1 9 9 N 1.37101 * 120.00123 * 179.97438 * 7 2 1 10 10 C 1.34774 * 120.00220 * 179.97438 * 9 7 2 11 11 O 1.21288 * 119.99876 * 359.72630 * 10 9 7 12 12 C 1.50703 * 119.99897 * 179.72728 * 10 9 7 13 13 N 1.46902 * 109.47318 * 185.81639 * 12 10 9 14 14 C 1.48582 * 111.00024 * 176.41506 * 13 12 10 15 15 C 1.55095 * 103.33766 * 200.61751 * 14 13 12 16 16 H 1.08995 * 110.76478 * 278.54347 * 15 14 13 17 17 C 1.50700 * 110.75886 * 155.33683 * 15 14 13 18 18 O 1.20829 * 120.00634 * 327.42977 * 17 15 14 19 19 O 1.34231 * 119.99868 * 147.43095 * 17 15 14 20 20 C 1.53971 * 102.70804 * 36.85400 * 15 14 13 21 21 C 1.52291 * 121.21590 * 194.37863 * 20 15 14 22 22 C 1.52313 * 121.18105 * 122.38203 * 20 15 14 23 23 C 1.48091 * 110.99864 * 58.95076 * 13 12 10 24 24 H 0.96999 * 120.00007 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99645 * 359.73173 * 9 7 2 26 26 H 1.09003 * 109.46954 * 305.81478 * 12 10 9 27 27 H 1.09001 * 109.46901 * 65.81289 * 12 10 9 28 28 H 1.08997 * 110.65109 * 319.08572 * 14 13 12 29 29 H 1.09003 * 110.64372 * 82.16352 * 14 13 12 30 30 H 0.96696 * 117.00231 * 180.02562 * 19 17 15 31 31 H 1.09002 * 117.51946 * 356.84284 * 21 20 15 32 32 H 1.09005 * 117.51817 * 141.96196 * 21 20 15 33 33 H 1.09005 * 117.51904 * 218.08346 * 22 20 15 34 34 H 1.08999 * 117.52073 * 3.16907 * 22 20 15 35 35 H 1.08994 * 110.00994 * 265.06366 * 23 13 12 36 36 H 1.09005 * 110.00243 * 26.42356 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2034 0.0000 10 6 4.0538 -2.3706 0.0011 11 8 3.4473 -3.4209 0.0075 12 6 5.5608 -2.3706 -0.0057 13 7 6.0499 -3.7489 -0.1435 14 6 7.5322 -3.7807 -0.2405 15 6 7.8183 -5.1554 -0.8990 16 1 7.7914 -5.9528 -0.1564 17 6 9.1443 -5.1392 -1.6148 18 8 9.5398 -4.1209 -2.1312 19 8 9.8862 -6.2561 -1.6788 20 6 6.6559 -5.3007 -1.8983 21 6 6.3359 -6.6407 -2.5474 22 6 6.9151 -5.4978 -3.3862 23 6 5.5489 -4.3675 -1.3923 24 1 -0.4850 0.8400 -0.0004 25 1 3.8649 -0.3633 -0.0047 26 1 5.9203 -1.7721 -0.8428 27 1 5.9283 -1.9462 0.9286 28 1 7.8936 -2.9693 -0.8721 29 1 7.9834 -3.7280 0.7504 30 1 10.7294 -6.1967 -2.1482 31 1 6.9923 -7.4804 -2.3191 32 1 5.2852 -6.8910 -2.6944 33 1 6.2453 -4.9963 -4.0849 34 1 7.9523 -5.5850 -3.7096 35 1 4.6437 -4.9392 -1.1881 36 1 5.3436 -3.5958 -2.1343 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714578346.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:06 Heat of formation + Delta-G solvation = -109.487481 kcal Electronic energy + Delta-G solvation = -20626.819799 eV Core-core repulsion = 17304.109380 eV Total energy + Delta-G solvation = -3322.710419 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.96481 -40.57177 -39.48322 -37.13111 -36.71668 -35.88056 -33.76433 -32.24738 -29.43515 -27.64301 -26.12573 -23.90533 -23.51691 -22.02453 -21.28815 -20.42397 -20.08900 -19.12445 -17.79396 -17.61239 -17.24964 -16.75388 -16.46412 -16.27352 -15.63789 -15.49641 -14.99896 -14.77329 -14.48877 -14.24554 -14.05317 -13.82948 -13.41144 -13.03055 -13.00772 -12.68342 -12.55869 -12.43093 -12.32465 -12.17879 -11.98411 -11.69383 -11.49982 -11.41977 -10.82568 -10.40156 -10.24967 -9.44567 -8.41694 -6.02420 1.08060 1.30190 1.34619 1.43791 1.89258 1.93935 2.22379 2.67839 2.73023 3.06696 3.14573 3.25035 3.50647 3.71418 3.86550 4.09263 4.16225 4.29327 4.32848 4.43394 4.48226 4.57261 4.63277 4.67443 4.80720 4.84798 4.93385 5.10115 5.14698 5.51220 5.55793 5.74708 5.82538 5.96807 6.58609 6.87312 6.96644 7.38338 7.94478 8.75807 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.034615 B = 0.004273 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.692518 B = 6550.496953 C = 6917.291459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.962 3.038 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.232 1.232 7 C -0.327 4.327 8 H 0.057 0.943 9 N -0.591 5.591 10 C 0.451 3.549 11 O -0.603 6.603 12 C 0.043 3.957 13 N -0.504 5.504 14 C 0.050 3.950 15 C -0.049 4.049 16 H 0.132 0.868 17 C 0.503 3.497 18 O -0.540 6.540 19 O -0.506 6.506 20 C -0.141 4.141 21 C -0.142 4.142 22 C -0.165 4.165 23 C 0.087 3.913 24 H 0.279 0.721 25 H 0.389 0.611 26 H 0.076 0.924 27 H 0.127 0.873 28 H 0.061 0.939 29 H 0.114 0.886 30 H 0.429 0.571 31 H 0.121 0.879 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.631 -7.649 -3.830 24.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.212 4.212 3 Si 0.782 3.218 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.155 1.155 7 C -0.456 4.456 8 H 0.075 0.925 9 N -0.233 5.233 10 C 0.239 3.761 11 O -0.487 6.487 12 C -0.088 4.088 13 N -0.228 5.228 14 C -0.077 4.077 15 C -0.069 4.069 16 H 0.150 0.850 17 C 0.345 3.655 18 O -0.430 6.430 19 O -0.319 6.319 20 C -0.142 4.142 21 C -0.179 4.179 22 C -0.202 4.202 23 C -0.041 4.041 24 H 0.089 0.911 25 H 0.224 0.776 26 H 0.094 0.906 27 H 0.145 0.855 28 H 0.079 0.921 29 H 0.132 0.868 30 H 0.291 0.709 31 H 0.139 0.861 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 21.581 -8.277 -3.284 23.346 hybrid contribution 0.305 1.573 -1.045 1.913 sum 21.886 -6.703 -4.329 23.295 Atomic orbital electron populations 1.69800 1.08082 1.29230 1.50308 1.26073 0.96431 1.02587 0.96084 0.85406 0.79578 0.76954 0.79873 1.18320 1.19913 1.15482 1.19002 0.81342 0.94984 1.50289 0.92462 1.42029 1.05899 1.07505 1.67875 1.20723 0.90492 0.83485 0.81430 1.90537 1.71152 1.32408 1.54620 1.22101 0.90724 0.91079 1.04904 1.64592 1.06422 1.16257 1.35570 1.23309 0.87623 0.94681 1.02090 1.21343 0.86740 1.01473 0.97306 0.84961 1.22991 0.85737 0.80379 0.76356 1.90721 1.72288 1.34719 1.45233 1.84517 1.36878 1.37918 1.72618 1.21582 0.95986 1.02036 0.94635 1.23082 1.02980 0.91128 1.00696 1.23054 1.02355 1.03072 0.91717 1.22112 0.96603 0.95975 0.89422 0.91135 0.77564 0.90585 0.85477 0.92091 0.86829 0.70899 0.86098 0.88089 0.88433 0.88396 0.91093 0.94995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.39 13.96 21.66 0.30 -56.09 16 2 C -0.01 -0.72 5.50 84.92 0.47 -0.26 16 3 Si 0.96 39.02 27.73 68.60 1.90 40.92 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.23 -7.94 6.52 99.48 0.65 -7.29 16 7 C -0.33 -19.20 10.16 84.04 0.85 -18.34 16 8 H 0.06 3.99 7.39 -2.91 -0.02 3.97 16 9 N -0.59 -28.10 5.09 -306.99 -1.56 -29.66 16 10 C 0.45 20.53 7.39 87.66 0.65 21.18 16 11 O -0.60 -33.13 14.10 -3.05 -0.04 -33.18 16 12 C 0.04 1.38 5.30 85.56 0.45 1.83 16 13 N -0.50 -15.62 5.13 -887.82 -4.55 -20.17 16 14 C 0.05 1.16 5.93 86.70 0.51 1.67 16 15 C -0.05 -1.02 3.43 -10.49 -0.04 -1.06 16 16 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 17 C 0.50 9.62 5.79 71.24 0.41 10.03 16 18 O -0.54 -13.48 16.74 21.96 0.37 -13.11 16 19 O -0.51 -6.38 13.42 -51.42 -0.69 -7.07 16 20 C -0.14 -3.42 2.39 -52.19 -0.12 -3.54 16 21 C -0.14 -2.82 10.29 30.41 0.31 -2.51 16 22 C -0.16 -3.50 9.69 30.41 0.29 -3.20 16 23 C 0.09 2.83 5.15 86.20 0.44 3.27 16 24 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 25 H 0.39 15.39 5.77 -92.71 -0.53 14.86 16 26 H 0.08 2.11 8.01 -2.39 -0.02 2.09 16 27 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16 28 H 0.06 1.47 7.08 -2.39 -0.02 1.45 16 29 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.43 1.69 9.10 -74.06 -0.67 1.01 16 31 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.10 1.91 6.96 -2.39 -0.02 1.89 16 35 H 0.07 2.79 7.04 -2.39 -0.02 2.78 16 36 H 0.03 1.11 7.72 -2.38 -0.02 1.09 16 Total: -1.00 -78.42 304.15 -0.18 -78.60 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: -0.14 Total: 30.69 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 4.24 Total: 9.07 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -5.81 Total: -105.93 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -0.37 Total: -53.36 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 1.90 Total: 40.92 kcal Total: -78.42 -0.18 -78.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714578346.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.888 kcal (2) G-P(sol) polarization free energy of solvation -78.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds