Wall clock time and date at job start Mon Mar 30 2020 04:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86803 * 120.00261 * 2 1 4 4 H 1.48493 * 109.47004 * 269.99946 * 3 2 1 5 5 H 1.48498 * 109.46802 * 29.99815 * 3 2 1 6 6 H 1.48499 * 109.46951 * 149.99713 * 3 2 1 7 7 C 1.39884 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00088 * 194.81454 * 7 2 1 9 9 C 1.41030 * 120.00203 * 14.54266 * 7 2 1 10 10 C 1.40664 * 120.26684 * 26.38261 * 9 7 2 11 11 C 1.38005 * 119.76977 * 179.97438 * 10 9 7 12 12 N 1.39854 * 119.84050 * 180.02562 * 11 10 9 13 13 C 1.47843 * 111.00546 * 156.46530 * 12 11 10 14 14 C 1.54907 * 104.79919 * 213.63643 * 13 12 11 15 15 H 1.08996 * 111.02293 * 155.17036 * 14 13 12 16 16 F 1.39896 * 110.98849 * 278.97423 * 14 13 12 17 17 C 1.55141 * 101.65155 * 37.06869 * 14 13 12 18 18 H 1.08993 * 110.70912 * 82.73186 * 17 14 13 19 19 F 1.39904 * 110.70250 * 205.96843 * 17 14 13 20 20 C 1.47446 * 111.00151 * 35.61686 * 12 11 10 21 21 C 1.39601 * 120.32119 * 0.02562 * 11 10 9 22 22 C 1.38052 * 120.55140 * 359.96303 * 21 11 10 23 23 C 1.38742 * 120.22032 * 359.77551 * 22 21 11 24 24 N 1.38859 * 120.16507 * 180.25848 * 23 22 21 25 25 H 0.97001 * 119.99763 * 4.97534 * 1 2 3 26 26 H 1.07999 * 120.11594 * 359.97438 * 10 9 7 27 27 H 1.09007 * 110.36941 * 332.46399 * 13 12 11 28 28 H 1.09001 * 110.37532 * 94.80258 * 13 12 11 29 29 H 1.08995 * 109.89000 * 242.66712 * 20 12 11 30 30 H 1.09002 * 109.88276 * 3.69714 * 20 12 11 31 31 H 1.08002 * 119.72160 * 179.97438 * 21 11 10 32 32 H 1.07999 * 119.89445 * 180.02562 * 22 21 11 33 33 H 0.97003 * 120.00110 * 175.00907 * 24 23 22 34 34 H 0.96997 * 120.00485 * 355.00508 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0463 -1.4000 5 1 1.4405 2.6526 0.7000 6 1 3.5406 1.4401 0.7001 7 6 2.0084 -1.2115 -0.0005 8 1 3.0615 -1.2272 0.2386 9 6 1.3371 -2.4131 -0.3078 10 6 0.1896 -2.3962 -1.1211 11 6 -0.4590 -3.5782 -1.4157 12 7 -1.5997 -3.5632 -2.2247 13 6 -1.8092 -4.8769 -2.8698 14 6 -2.4260 -4.5453 -4.2515 15 1 -2.2284 -5.3415 -4.9692 16 9 -3.7993 -4.3024 -4.1420 17 6 -1.6612 -3.2506 -4.6334 18 1 -0.6915 -3.4902 -5.0694 19 9 -2.4200 -2.4686 -5.5109 20 6 -1.4880 -2.5361 -3.2766 21 6 0.0181 -4.7888 -0.9100 22 6 1.1432 -4.8208 -0.1107 23 6 1.8160 -3.6467 0.1953 24 7 2.9506 -3.6808 0.9951 25 1 -0.4850 0.8369 -0.0729 26 1 -0.1826 -1.4615 -1.5138 27 1 -0.8581 -5.3950 -2.9932 28 1 -2.4988 -5.4827 -2.2819 29 1 -2.2703 -1.7879 -3.1489 30 1 -0.5085 -2.0603 -3.2277 31 1 -0.4973 -5.7081 -1.1464 32 1 1.5032 -5.7634 0.2744 33 1 3.4606 -2.8700 1.1483 34 1 3.2334 -4.5154 1.4006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714691662.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:35 Heat of formation + Delta-G solvation = -63.475102 kcal Electronic energy + Delta-G solvation = -20574.791096 eV Core-core repulsion = 17142.988409 eV Total energy + Delta-G solvation = -3431.802688 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.05454 -46.96822 -39.15481 -36.91811 -33.62909 -33.01778 -30.11537 -29.85999 -28.50253 -26.22786 -24.88234 -22.18646 -21.89209 -20.34299 -19.46635 -17.76443 -16.89474 -16.43453 -16.02153 -15.70369 -15.39152 -14.81044 -14.76420 -14.52517 -14.29752 -13.66741 -13.37460 -13.02687 -12.92683 -12.55324 -12.24435 -11.86207 -11.70530 -11.43199 -11.34361 -11.08902 -11.03804 -10.73109 -10.44414 -10.32497 -10.00564 -9.56549 -9.47140 -9.15749 -8.13170 -7.40775 -6.71728 -6.01480 -4.19655 2.76723 3.04591 3.09612 3.10980 3.18690 3.96383 4.02738 4.17814 4.45643 4.52683 4.68360 4.72238 4.96825 5.22423 5.23850 5.49245 5.68188 5.80853 5.96669 6.04010 6.19671 6.34282 6.40413 6.69405 6.97291 7.05594 7.17290 7.41443 7.59545 7.64393 7.88852 8.13396 8.24916 8.52509 8.76401 8.81822 9.05948 9.13090 10.27708 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.006642 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.866106 B = 4214.668108 C = 5369.981795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.462 4.462 8 H 0.072 0.928 9 C 0.081 3.919 10 C -0.163 4.163 11 C 0.061 3.939 12 N -0.461 5.461 13 C 0.020 3.980 14 C 0.057 3.943 15 H 0.104 0.896 16 F -0.192 7.192 17 C 0.046 3.954 18 H 0.108 0.892 19 F -0.198 7.198 20 C 0.018 3.982 21 C -0.223 4.223 22 C -0.165 4.165 23 C 0.107 3.893 24 N -0.885 5.885 25 H 0.278 0.722 26 H 0.128 0.872 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.390 0.610 34 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.178 -5.791 -6.224 8.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.493 4.493 8 H 0.090 0.910 9 C 0.075 3.925 10 C -0.186 4.186 11 C -0.036 4.036 12 N -0.178 5.178 13 C -0.108 4.108 14 C 0.020 3.980 15 H 0.122 0.878 16 F -0.173 7.173 17 C 0.008 3.992 18 H 0.126 0.874 19 F -0.179 7.179 20 C -0.109 4.109 21 C -0.245 4.245 22 C -0.189 4.189 23 C 0.006 3.994 24 N -0.427 5.427 25 H 0.089 0.911 26 H 0.146 0.854 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.219 0.781 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.617 -5.450 -5.916 8.068 hybrid contribution 1.030 0.653 -0.121 1.226 sum 0.413 -4.797 -6.037 7.722 Atomic orbital electron populations 1.69848 1.07144 1.29095 1.36217 1.25756 0.94711 1.00775 0.92851 0.86411 0.80354 0.81409 0.79121 1.19537 1.20466 1.18895 1.19137 0.96338 0.91012 1.42845 0.91035 1.17094 0.93072 0.90424 0.91864 1.20830 0.99157 0.95491 1.03095 1.18667 0.89988 0.94754 1.00180 1.60931 1.36712 1.02904 1.17207 1.23833 1.01494 0.93396 0.92036 1.23279 0.77380 0.97732 0.99642 0.87824 1.92835 1.31526 1.95655 1.97246 1.23543 0.94440 0.90404 0.90773 0.87409 1.92817 1.78074 1.76299 1.70673 1.23706 1.04830 0.95707 0.86619 1.19914 1.00733 0.94618 1.09225 1.19803 0.99070 0.94851 1.05185 1.17980 0.90870 0.93928 0.96644 1.41885 1.30611 1.11880 1.58349 0.91058 0.85428 0.90172 0.88727 0.89144 0.89120 0.89012 0.89350 0.78116 0.79827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.47 10.88 55.54 0.60 -19.86 16 2 C 0.08 1.85 5.19 -17.33 -0.09 1.76 16 3 Si 0.90 18.44 29.59 -169.99 -5.03 13.41 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 7 C -0.46 -11.63 8.53 -37.91 -0.32 -11.96 16 8 H 0.07 1.70 6.63 -52.48 -0.35 1.36 16 9 C 0.08 2.04 5.58 -106.65 -0.59 1.45 16 10 C -0.16 -4.04 7.20 -38.75 -0.28 -4.31 16 11 C 0.06 1.36 5.79 -83.77 -0.48 0.87 16 12 N -0.46 -9.01 5.28 -167.92 -0.89 -9.90 16 13 C 0.02 0.30 5.25 -2.30 -0.01 0.29 16 14 C 0.06 0.78 4.74 -24.59 -0.12 0.67 16 15 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 16 F -0.19 -3.15 16.97 2.25 0.04 -3.11 16 17 C 0.05 0.67 4.64 -24.91 -0.12 0.56 16 18 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 19 F -0.20 -3.18 16.92 2.25 0.04 -3.14 16 20 C 0.02 0.33 5.99 -2.83 -0.02 0.32 16 21 C -0.22 -4.71 8.65 -39.14 -0.34 -5.05 16 22 C -0.16 -3.53 9.87 -39.46 -0.39 -3.92 16 23 C 0.11 2.46 6.79 -83.22 -0.56 1.89 16 24 N -0.89 -17.04 8.97 32.75 0.29 -16.74 16 25 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 26 H 0.13 3.29 4.81 -52.49 -0.25 3.04 16 27 H 0.08 1.15 6.53 -51.92 -0.34 0.81 16 28 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 30 H 0.09 1.73 5.88 -51.93 -0.31 1.42 16 31 H 0.09 1.71 6.42 -52.49 -0.34 1.37 16 32 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.39 7.38 7.04 -40.82 -0.29 7.09 16 34 H 0.38 6.07 8.84 -40.82 -0.36 5.71 16 LS Contribution 283.17 15.07 4.27 4.27 Total: -1.00 -28.22 283.17 -7.48 -35.69 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -3.48 Total: 16.83 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -3.33 Total: -17.44 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.01 Total: -46.51 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 0.08 Total: -6.26 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.22 -7.48 -35.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714691662.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.781 kcal (2) G-P(sol) polarization free energy of solvation -28.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds