Wall clock time and date at job start Mon Mar 30 2020 04:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86803 * 120.00261 * 2 1 4 4 H 1.48493 * 109.47004 * 269.99946 * 3 2 1 5 5 H 1.48498 * 109.46802 * 29.99815 * 3 2 1 6 6 H 1.48499 * 109.46951 * 149.99713 * 3 2 1 7 7 C 1.39884 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00088 * 194.81454 * 7 2 1 9 9 C 1.41030 * 120.00203 * 14.54266 * 7 2 1 10 10 C 1.40664 * 120.26684 * 26.38261 * 9 7 2 11 11 C 1.38005 * 119.76977 * 179.97438 * 10 9 7 12 12 N 1.39854 * 119.84050 * 180.02562 * 11 10 9 13 13 C 1.47843 * 111.00546 * 156.46530 * 12 11 10 14 14 C 1.54907 * 104.79919 * 213.63643 * 13 12 11 15 15 H 1.08996 * 111.02293 * 155.17036 * 14 13 12 16 16 F 1.39896 * 110.98849 * 278.97423 * 14 13 12 17 17 C 1.55141 * 101.65155 * 37.06869 * 14 13 12 18 18 H 1.08993 * 110.70912 * 82.73186 * 17 14 13 19 19 F 1.39904 * 110.70250 * 205.96843 * 17 14 13 20 20 C 1.47446 * 111.00151 * 35.61686 * 12 11 10 21 21 C 1.39601 * 120.32119 * 0.02562 * 11 10 9 22 22 C 1.38052 * 120.55140 * 359.96303 * 21 11 10 23 23 C 1.38742 * 120.22032 * 359.77551 * 22 21 11 24 24 N 1.38859 * 120.16507 * 180.25848 * 23 22 21 25 25 H 0.97001 * 119.99763 * 4.97534 * 1 2 3 26 26 H 1.07999 * 120.11594 * 359.97438 * 10 9 7 27 27 H 1.09007 * 110.36941 * 332.46399 * 13 12 11 28 28 H 1.09001 * 110.37532 * 94.80258 * 13 12 11 29 29 H 1.08995 * 109.89000 * 242.66712 * 20 12 11 30 30 H 1.09002 * 109.88276 * 3.69714 * 20 12 11 31 31 H 1.08002 * 119.72160 * 179.97438 * 21 11 10 32 32 H 1.07999 * 119.89445 * 180.02562 * 22 21 11 33 33 H 0.97003 * 120.00110 * 175.00907 * 24 23 22 34 34 H 0.96997 * 120.00485 * 355.00508 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0463 -1.4000 5 1 1.4405 2.6526 0.7000 6 1 3.5406 1.4401 0.7001 7 6 2.0084 -1.2115 -0.0005 8 1 3.0615 -1.2272 0.2386 9 6 1.3371 -2.4131 -0.3078 10 6 0.1896 -2.3962 -1.1211 11 6 -0.4590 -3.5782 -1.4157 12 7 -1.5997 -3.5632 -2.2247 13 6 -1.8092 -4.8769 -2.8698 14 6 -2.4260 -4.5453 -4.2515 15 1 -2.2284 -5.3415 -4.9692 16 9 -3.7993 -4.3024 -4.1420 17 6 -1.6612 -3.2506 -4.6334 18 1 -0.6915 -3.4902 -5.0694 19 9 -2.4200 -2.4686 -5.5109 20 6 -1.4880 -2.5361 -3.2766 21 6 0.0181 -4.7888 -0.9100 22 6 1.1432 -4.8208 -0.1107 23 6 1.8160 -3.6467 0.1953 24 7 2.9506 -3.6808 0.9951 25 1 -0.4850 0.8369 -0.0729 26 1 -0.1826 -1.4615 -1.5138 27 1 -0.8581 -5.3950 -2.9932 28 1 -2.4988 -5.4827 -2.2819 29 1 -2.2703 -1.7879 -3.1489 30 1 -0.5085 -2.0603 -3.2277 31 1 -0.4973 -5.7081 -1.1464 32 1 1.5032 -5.7634 0.2744 33 1 3.4606 -2.8700 1.1483 34 1 3.2334 -4.5154 1.4006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714691662.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:35 Heat of formation + Delta-G solvation = -81.422382 kcal Electronic energy + Delta-G solvation = -20575.569349 eV Core-core repulsion = 17142.988409 eV Total energy + Delta-G solvation = -3432.580940 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.26629 -48.18405 -40.70295 -38.50514 -35.42071 -34.56392 -31.63828 -31.46147 -29.92970 -27.86302 -26.58853 -23.60910 -23.40502 -21.78343 -21.08872 -19.31108 -18.21270 -17.99463 -17.49150 -17.24022 -16.72590 -16.47029 -16.18451 -15.80923 -15.70242 -15.07922 -14.71355 -14.57923 -14.44498 -14.20586 -13.76709 -13.46252 -13.34917 -12.98916 -12.81329 -12.73681 -12.46174 -12.11320 -11.98357 -11.76786 -11.46991 -11.21720 -11.11288 -10.96281 -9.65636 -9.21479 -8.52751 -7.68066 -6.05018 1.05003 1.30931 1.40340 1.51214 1.53586 2.25366 2.77152 2.86940 2.96953 3.22972 3.31890 3.55670 3.68469 3.84233 3.90402 4.19368 4.21120 4.47562 4.56188 4.70306 4.76538 4.82573 4.99741 5.14993 5.22288 5.35144 5.42031 5.72099 5.90605 5.97482 6.11648 6.43945 6.47265 6.83572 6.96710 7.04836 7.34795 7.58754 8.48174 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.006642 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.866106 B = 4214.668108 C = 5369.981795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.032 3.968 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.488 4.488 8 H 0.076 0.924 9 C 0.042 3.958 10 C -0.184 4.184 11 C 0.057 3.943 12 N -0.482 5.482 13 C 0.018 3.982 14 C 0.063 3.937 15 H 0.155 0.845 16 F -0.209 7.209 17 C 0.051 3.949 18 H 0.141 0.859 19 F -0.206 7.206 20 C 0.018 3.982 21 C -0.215 4.215 22 C -0.171 4.171 23 C 0.096 3.904 24 N -0.876 5.876 25 H 0.279 0.721 26 H 0.106 0.894 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.391 0.609 34 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.782 -7.707 -7.004 10.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.180 4.180 3 Si 0.793 3.207 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.519 4.519 8 H 0.094 0.906 9 C 0.037 3.963 10 C -0.207 4.207 11 C -0.041 4.041 12 N -0.198 5.198 13 C -0.109 4.109 14 C 0.026 3.974 15 H 0.173 0.827 16 F -0.190 7.190 17 C 0.014 3.986 18 H 0.158 0.842 19 F -0.187 7.187 20 C -0.109 4.109 21 C -0.238 4.238 22 C -0.195 4.195 23 C -0.006 4.006 24 N -0.418 5.418 25 H 0.089 0.911 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.220 0.780 34 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.002 -7.397 -6.689 9.974 hybrid contribution 0.784 1.113 0.126 1.367 sum 0.786 -6.284 -6.563 9.121 Atomic orbital electron populations 1.69948 1.08629 1.29775 1.38120 1.26538 0.95329 1.03873 0.92243 0.85366 0.79157 0.77122 0.79059 1.19269 1.20461 1.17957 1.19384 0.96634 0.91857 1.44037 0.90638 1.17463 0.94050 0.91716 0.93088 1.20803 1.00014 0.95797 1.04055 1.18798 0.90336 0.94371 1.00578 1.60779 1.35402 1.05355 1.18286 1.23962 1.02669 0.91374 0.92852 1.23532 0.75968 0.98258 0.99634 0.82730 1.92808 1.33038 1.95826 1.97317 1.23638 0.96117 0.90101 0.88742 0.84154 1.92801 1.78493 1.76761 1.70663 1.23545 1.02959 0.95583 0.88813 1.20313 1.00335 0.95257 1.07851 1.20186 0.98922 0.95542 1.04845 1.18177 0.91814 0.93727 0.96921 1.41786 1.29533 1.12854 1.57662 0.91078 0.87651 0.88379 0.88051 0.91338 0.91001 0.85882 0.86356 0.78037 0.77876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.04 10.88 21.82 0.24 -44.81 16 2 C 0.03 1.64 5.19 85.23 0.44 2.08 16 3 Si 0.97 38.81 29.59 68.60 2.03 40.84 16 4 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.49 -25.23 8.53 23.35 0.20 -25.03 16 8 H 0.08 3.67 6.63 -2.91 -0.02 3.65 16 9 C 0.04 2.18 5.58 -21.18 -0.12 2.06 16 10 C -0.18 -9.40 7.20 22.81 0.16 -9.24 16 11 C 0.06 2.51 5.79 38.13 0.22 2.73 16 12 N -0.48 -18.57 5.28 -685.16 -3.62 -22.19 16 13 C 0.02 0.49 5.25 86.77 0.46 0.95 16 14 C 0.06 1.52 4.74 31.98 0.15 1.67 16 15 H 0.16 2.28 8.14 -2.39 -0.02 2.26 16 16 F -0.21 -6.41 16.97 44.97 0.76 -5.65 16 17 C 0.05 1.41 4.64 31.78 0.15 1.55 16 18 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 19 F -0.21 -6.37 16.92 44.97 0.76 -5.61 16 20 C 0.02 0.67 5.99 86.65 0.52 1.19 16 21 C -0.22 -8.63 8.65 22.55 0.20 -8.44 16 22 C -0.17 -6.95 9.87 22.35 0.22 -6.72 16 23 C 0.10 4.35 6.79 38.97 0.26 4.62 16 24 N -0.88 -32.72 8.97 -50.31 -0.45 -33.17 16 25 H 0.28 13.98 8.30 -92.71 -0.77 13.21 16 26 H 0.11 5.78 4.81 -2.91 -0.01 5.77 16 27 H 0.10 2.42 6.53 -2.38 -0.02 2.40 16 28 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.07 2.73 8.10 -2.39 -0.02 2.71 16 30 H 0.07 2.88 5.88 -2.39 -0.01 2.87 16 31 H 0.12 4.10 6.42 -2.91 -0.02 4.08 16 32 H 0.12 4.04 8.06 -2.91 -0.02 4.02 16 33 H 0.39 14.58 7.04 -92.71 -0.65 13.93 16 34 H 0.39 11.87 8.84 -92.71 -0.82 11.05 16 Total: -1.00 -62.99 283.17 2.28 -60.70 By element: Atomic # 1 Polarization: 42.76 SS G_CDS: -0.30 Total: 42.46 kcal Atomic # 6 Polarization: -35.44 SS G_CDS: 2.86 Total: -32.58 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -3.83 Total: -100.16 kcal Atomic # 9 Polarization: -12.78 SS G_CDS: 1.52 Total: -11.25 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -62.99 2.28 -60.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714691662.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.718 kcal (2) G-P(sol) polarization free energy of solvation -62.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds