Wall clock time and date at job start Mon Mar 30 2020 04:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31011 * 1 3 3 Si 1.86804 * 120.00039 * 2 1 4 4 H 1.48499 * 109.47145 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46775 * 300.00243 * 3 2 1 6 6 H 1.48501 * 109.46834 * 59.99957 * 3 2 1 7 7 C 1.39596 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99940 * 179.97438 * 7 2 1 9 9 N 1.36113 * 119.99594 * 0.02562 * 7 2 1 10 10 C 1.34785 * 120.00121 * 180.02562 * 9 7 2 11 11 O 1.21500 * 119.99388 * 359.97438 * 10 9 7 12 12 C 1.48825 * 120.00391 * 180.02562 * 10 9 7 13 13 O 1.21437 * 119.99853 * 353.55048 * 12 10 9 14 14 N 1.34774 * 119.99906 * 173.56024 * 12 10 9 15 15 C 1.45642 * 119.63668 * 173.25268 * 14 12 10 16 16 C 1.51068 * 110.99460 * 130.07327 * 15 14 12 17 17 C 1.50351 * 115.63948 * 45.43652 * 16 15 14 18 18 H 1.09000 * 106.64090 * 91.62026 * 17 16 15 19 19 O 1.43652 * 108.34924 * 207.90138 * 17 16 15 20 20 C 1.44368 * 107.79709 * 145.30903 * 19 17 16 21 21 C 1.55595 * 103.20061 * 323.19128 * 20 19 17 22 22 C 1.51082 * 116.82460 * 329.41410 * 17 16 15 23 23 H 1.09001 * 105.41139 * 135.62170 * 22 17 16 24 24 C 1.45235 * 119.63752 * 353.26614 * 14 12 10 25 25 H 0.96990 * 120.00174 * 359.97438 * 1 2 3 26 26 H 0.97003 * 120.00819 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.16540 * 250.44874 * 15 14 12 28 28 H 1.09004 * 109.16342 * 9.70259 * 15 14 12 29 29 H 1.09003 * 108.33257 * 167.80989 * 16 15 14 30 30 H 1.09002 * 108.33677 * 284.83341 * 16 15 14 31 31 H 1.08991 * 110.67511 * 204.75549 * 20 19 17 32 32 H 1.09008 * 110.81063 * 81.68264 * 20 19 17 33 33 H 1.09003 * 111.26407 * 281.97123 * 21 20 19 34 34 H 1.09002 * 111.27220 * 157.43306 * 21 20 19 35 35 H 1.08998 * 108.47577 * 337.16755 * 24 14 12 36 36 H 1.09001 * 108.46866 * 94.56033 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.7041 1.3464 -0.0006 5 1 1.8853 2.3964 -1.2125 6 1 1.8853 2.3964 1.2125 7 6 2.0081 -1.2089 -0.0005 8 1 3.0880 -1.2089 -0.0010 9 7 1.3275 -2.3877 -0.0016 10 6 2.0014 -3.5550 -0.0016 11 8 3.2164 -3.5549 -0.0011 12 6 1.2572 -4.8438 -0.0033 13 8 0.0485 -4.8472 0.1134 14 7 1.9249 -6.0072 -0.1342 15 6 1.2106 -7.2680 0.0124 16 6 1.5037 -8.1939 -1.1447 17 6 2.9501 -8.3028 -1.5406 18 1 3.3657 -9.1386 -0.9777 19 8 3.0131 -8.6275 -2.9385 20 6 4.1706 -7.9667 -3.4933 21 6 4.2043 -6.6103 -2.7317 22 6 3.8115 -7.0817 -1.3186 23 1 4.7363 -7.4555 -0.8791 24 6 3.3488 -5.9899 -0.4197 25 1 -0.4850 0.8399 0.0004 26 1 0.3575 -2.3878 -0.0016 27 1 1.5186 -7.7477 0.9415 28 1 0.1394 -7.0700 0.0499 29 1 1.1333 -9.1872 -0.8913 30 1 0.9526 -7.8392 -2.0158 31 1 4.0447 -7.8041 -4.5636 32 1 5.0759 -8.5411 -3.2965 33 1 3.4699 -5.9126 -3.1342 34 1 5.2044 -6.1768 -2.7402 35 1 3.5971 -5.0341 -0.8810 36 1 3.8909 -6.0655 0.5229 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724829403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:52 Heat of formation + Delta-G solvation = -101.543481 kcal Electronic energy + Delta-G solvation = -21105.980666 eV Core-core repulsion = 17783.614725 eV Total energy + Delta-G solvation = -3322.365941 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.68804 -39.29267 -37.35271 -36.02594 -34.29168 -32.99965 -31.84737 -31.34552 -29.04934 -26.29382 -25.01442 -23.69044 -22.58256 -21.92817 -19.61591 -18.63182 -18.04508 -16.96033 -16.47495 -16.16544 -15.72231 -15.39351 -15.33144 -14.73182 -14.02570 -13.93554 -13.82735 -13.52660 -13.16400 -13.00467 -12.56857 -12.21152 -11.95537 -11.83368 -11.61708 -11.45014 -11.25229 -10.82327 -10.72905 -10.50327 -10.44601 -10.40504 -10.20237 -9.75997 -9.55503 -8.36022 -8.23742 -8.01056 -6.72267 -4.04434 2.38158 3.10460 3.12361 3.18358 3.29219 3.75474 4.00082 4.19251 4.44390 4.53414 4.73104 4.83895 5.00565 5.12518 5.17384 5.22887 5.34387 5.43594 5.52521 5.60820 5.70321 5.84567 5.88213 5.91068 6.02681 6.08544 6.13944 6.28267 6.53005 6.88453 6.98397 7.26370 7.61791 7.75221 8.27004 8.55175 8.90384 9.26207 9.78858 10.42372 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.030340 B = 0.004869 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.638324 B = 5749.724253 C = 6294.056465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.032 3.968 3 Si 0.939 3.061 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.306 4.306 8 H 0.114 0.886 9 N -0.495 5.495 10 C 0.391 3.609 11 O -0.589 6.589 12 C 0.514 3.486 13 O -0.545 6.545 14 N -0.588 5.588 15 C 0.115 3.885 16 C -0.137 4.137 17 C 0.099 3.901 18 H 0.059 0.941 19 O -0.380 6.380 20 C 0.045 3.955 21 C -0.148 4.148 22 C -0.126 4.126 23 H 0.071 0.929 24 C 0.107 3.893 25 H 0.281 0.719 26 H 0.405 0.595 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.138 0.862 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.009 -12.584 -3.274 14.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.436 4.436 8 H 0.132 0.868 9 N -0.128 5.128 10 C 0.176 3.824 11 O -0.479 6.479 12 C 0.300 3.700 13 O -0.423 6.423 14 N -0.322 5.322 15 C -0.009 4.009 16 C -0.175 4.175 17 C 0.041 3.959 18 H 0.077 0.923 19 O -0.299 6.299 20 C -0.031 4.031 21 C -0.186 4.186 22 C -0.145 4.145 23 H 0.090 0.910 24 C -0.016 4.016 25 H 0.091 0.909 26 H 0.240 0.760 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.155 0.845 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.845 -12.590 -3.308 14.270 hybrid contribution 0.024 0.683 0.147 0.699 sum 5.869 -11.908 -3.161 13.647 Atomic orbital electron populations 1.69486 1.06573 1.29389 1.44940 1.25612 0.95620 1.00555 0.95775 0.85662 0.79863 0.79950 0.78112 1.18677 1.20260 1.20249 1.19943 0.94027 0.81800 1.47855 0.86798 1.41596 1.10533 1.04247 1.56425 1.18878 0.87813 0.84213 0.91475 1.90417 1.12901 1.85681 1.58912 1.20717 0.87163 0.85721 0.76366 1.90674 1.14212 1.87473 1.49897 1.46985 1.09814 1.04976 1.70411 1.20776 0.99334 0.83830 0.96910 1.21078 0.96094 1.00443 0.99902 1.21160 0.95979 0.95682 0.83037 0.92252 1.88836 1.46818 1.72064 1.22186 1.23604 0.88857 0.91954 0.98699 1.23308 1.03036 0.97894 0.94326 1.21214 0.99873 0.96050 0.97400 0.91048 1.21022 0.79943 1.01638 0.98970 0.90870 0.75978 0.92128 0.88368 0.90432 0.90785 0.89150 0.92230 0.89997 0.89510 0.84476 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.83 13.03 55.53 0.72 -22.11 16 2 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 3 Si 0.94 19.61 29.56 -169.99 -5.02 14.58 16 4 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 6 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.31 -8.18 9.68 -15.15 -0.15 -8.33 16 8 H 0.11 3.10 7.15 -52.49 -0.38 2.72 16 9 N -0.49 -12.96 5.24 -11.59 -0.06 -13.02 16 10 C 0.39 9.60 7.60 -11.87 -0.09 9.51 16 11 O -0.59 -14.79 12.77 5.37 0.07 -14.72 16 12 C 0.51 11.30 7.68 -11.88 -0.09 11.20 16 13 O -0.55 -12.87 15.78 5.42 0.09 -12.79 16 14 N -0.59 -10.58 3.06 -179.77 -0.55 -11.13 16 15 C 0.11 1.69 6.40 -5.48 -0.04 1.65 16 16 C -0.14 -1.77 5.59 -29.02 -0.16 -1.93 16 17 C 0.10 1.26 3.52 -29.02 -0.10 1.16 16 18 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 19 O -0.38 -5.15 10.93 -35.23 -0.38 -5.54 16 20 C 0.05 0.49 7.77 38.54 0.30 0.79 16 21 C -0.15 -1.79 6.50 -24.80 -0.16 -1.95 16 22 C -0.13 -1.64 2.59 -93.09 -0.24 -1.88 16 23 H 0.07 0.80 8.02 -51.93 -0.42 0.39 16 24 C 0.11 1.74 5.10 -6.78 -0.03 1.71 16 25 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 26 H 0.40 10.77 7.37 -40.82 -0.30 10.47 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.10 1.54 6.86 -51.93 -0.36 1.19 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.07 7.94 -51.93 -0.41 0.66 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.14 2.63 4.57 -52.43 -0.24 2.39 16 36 H 0.06 0.96 8.13 -51.93 -0.42 0.53 16 LS Contribution 294.93 15.07 4.44 4.44 Total: -1.00 -29.45 294.93 -6.17 -35.62 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -4.61 Total: 12.01 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: -0.86 Total: 12.65 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.11 Total: -46.26 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.23 Total: -33.05 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.45 -6.17 -35.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724829403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.920 kcal (2) G-P(sol) polarization free energy of solvation -29.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds