Wall clock time and date at job start Mon Mar 30 2020 04:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31011 * 1 3 3 Si 1.86804 * 120.00039 * 2 1 4 4 H 1.48499 * 109.47145 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46775 * 300.00243 * 3 2 1 6 6 H 1.48501 * 109.46834 * 59.99957 * 3 2 1 7 7 C 1.39596 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99940 * 179.97438 * 7 2 1 9 9 N 1.36113 * 119.99594 * 0.02562 * 7 2 1 10 10 C 1.34785 * 120.00121 * 180.02562 * 9 7 2 11 11 O 1.21500 * 119.99388 * 359.97438 * 10 9 7 12 12 C 1.48825 * 120.00391 * 180.02562 * 10 9 7 13 13 O 1.21437 * 119.99853 * 353.55048 * 12 10 9 14 14 N 1.34774 * 119.99906 * 173.56024 * 12 10 9 15 15 C 1.45642 * 119.63668 * 173.25268 * 14 12 10 16 16 C 1.51068 * 110.99460 * 130.07327 * 15 14 12 17 17 C 1.50351 * 115.63948 * 45.43652 * 16 15 14 18 18 H 1.09000 * 106.64090 * 91.62026 * 17 16 15 19 19 O 1.43652 * 108.34924 * 207.90138 * 17 16 15 20 20 C 1.44368 * 107.79709 * 145.30903 * 19 17 16 21 21 C 1.55595 * 103.20061 * 323.19128 * 20 19 17 22 22 C 1.51082 * 116.82460 * 329.41410 * 17 16 15 23 23 H 1.09001 * 105.41139 * 135.62170 * 22 17 16 24 24 C 1.45235 * 119.63752 * 353.26614 * 14 12 10 25 25 H 0.96990 * 120.00174 * 359.97438 * 1 2 3 26 26 H 0.97003 * 120.00819 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.16540 * 250.44874 * 15 14 12 28 28 H 1.09004 * 109.16342 * 9.70259 * 15 14 12 29 29 H 1.09003 * 108.33257 * 167.80989 * 16 15 14 30 30 H 1.09002 * 108.33677 * 284.83341 * 16 15 14 31 31 H 1.08991 * 110.67511 * 204.75549 * 20 19 17 32 32 H 1.09008 * 110.81063 * 81.68264 * 20 19 17 33 33 H 1.09003 * 111.26407 * 281.97123 * 21 20 19 34 34 H 1.09002 * 111.27220 * 157.43306 * 21 20 19 35 35 H 1.08998 * 108.47577 * 337.16755 * 24 14 12 36 36 H 1.09001 * 108.46866 * 94.56033 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.7041 1.3464 -0.0006 5 1 1.8853 2.3964 -1.2125 6 1 1.8853 2.3964 1.2125 7 6 2.0081 -1.2089 -0.0005 8 1 3.0880 -1.2089 -0.0010 9 7 1.3275 -2.3877 -0.0016 10 6 2.0014 -3.5550 -0.0016 11 8 3.2164 -3.5549 -0.0011 12 6 1.2572 -4.8438 -0.0033 13 8 0.0485 -4.8472 0.1134 14 7 1.9249 -6.0072 -0.1342 15 6 1.2106 -7.2680 0.0124 16 6 1.5037 -8.1939 -1.1447 17 6 2.9501 -8.3028 -1.5406 18 1 3.3657 -9.1386 -0.9777 19 8 3.0131 -8.6275 -2.9385 20 6 4.1706 -7.9667 -3.4933 21 6 4.2043 -6.6103 -2.7317 22 6 3.8115 -7.0817 -1.3186 23 1 4.7363 -7.4555 -0.8791 24 6 3.3488 -5.9899 -0.4197 25 1 -0.4850 0.8399 0.0004 26 1 0.3575 -2.3878 -0.0016 27 1 1.5186 -7.7477 0.9415 28 1 0.1394 -7.0700 0.0499 29 1 1.1333 -9.1872 -0.8913 30 1 0.9526 -7.8392 -2.0158 31 1 4.0447 -7.8041 -4.5636 32 1 5.0759 -8.5411 -3.2965 33 1 3.4699 -5.9126 -3.1342 34 1 5.2044 -6.1768 -2.7402 35 1 3.5971 -5.0341 -0.8810 36 1 3.8909 -6.0655 0.5229 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724829403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:52 Heat of formation + Delta-G solvation = -122.831137 kcal Electronic energy + Delta-G solvation = -21106.903768 eV Core-core repulsion = 17783.614725 eV Total energy + Delta-G solvation = -3323.289043 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.04927 -40.73319 -39.17956 -37.51983 -36.17923 -34.09093 -33.54329 -32.90545 -30.10504 -28.10819 -26.56749 -24.97522 -23.80523 -23.18477 -21.23081 -20.40084 -19.49728 -18.46862 -18.03659 -17.38648 -17.00367 -16.85785 -16.80851 -16.37338 -15.73960 -15.29003 -15.22640 -14.89902 -14.76272 -14.18212 -14.10458 -13.70608 -13.45382 -13.15389 -12.97891 -12.79316 -12.55262 -12.43622 -12.20462 -12.07448 -11.80050 -11.76739 -11.54552 -11.41408 -10.54254 -10.28770 -9.90018 -9.72069 -8.66029 -6.10229 0.55905 1.41493 1.45809 1.56894 1.72037 2.26908 2.32055 2.81748 3.02861 3.14263 3.46581 3.54476 3.79527 3.88871 4.02624 4.17426 4.28415 4.33030 4.35100 4.43970 4.61120 4.72405 4.82797 4.89044 4.92337 4.98262 5.11367 5.15370 5.21468 5.27396 5.53698 5.68898 5.95945 6.06991 6.32662 6.76310 6.95656 7.27253 7.78812 8.50047 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.030340 B = 0.004869 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.638324 B = 5749.724253 C = 6294.056465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.005 4.005 3 Si 1.011 2.989 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.341 4.341 8 H 0.102 0.898 9 N -0.511 5.511 10 C 0.390 3.610 11 O -0.597 6.597 12 C 0.512 3.488 13 O -0.568 6.568 14 N -0.577 5.577 15 C 0.110 3.890 16 C -0.131 4.131 17 C 0.097 3.903 18 H 0.087 0.913 19 O -0.398 6.398 20 C 0.048 3.952 21 C -0.150 4.150 22 C -0.129 4.129 23 H 0.100 0.900 24 C 0.108 3.892 25 H 0.288 0.712 26 H 0.399 0.601 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.052 0.948 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.448 -13.977 -3.337 16.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.210 4.210 3 Si 0.831 3.169 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.471 4.471 8 H 0.120 0.880 9 N -0.144 5.144 10 C 0.175 3.825 11 O -0.487 6.487 12 C 0.297 3.703 13 O -0.448 6.448 14 N -0.309 5.309 15 C -0.012 4.012 16 C -0.170 4.170 17 C 0.039 3.961 18 H 0.104 0.896 19 O -0.318 6.318 20 C -0.028 4.028 21 C -0.188 4.188 22 C -0.148 4.148 23 H 0.118 0.882 24 C -0.014 4.014 25 H 0.099 0.901 26 H 0.233 0.767 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.126 0.874 30 H 0.070 0.930 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.309 -14.028 -3.381 16.176 hybrid contribution -0.389 0.981 0.153 1.066 sum 6.920 -13.047 -3.228 15.118 Atomic orbital electron populations 1.69557 1.07929 1.30749 1.45255 1.26556 0.96456 1.03540 0.94408 0.84631 0.78364 0.75252 0.78613 1.18534 1.19207 1.19240 1.20035 0.93749 0.82865 1.50446 0.87969 1.41693 1.10185 1.04836 1.57669 1.19456 0.87975 0.84995 0.90080 1.90418 1.13345 1.86344 1.58599 1.20270 0.86801 0.86064 0.77123 1.90659 1.14818 1.87796 1.51519 1.47111 1.10646 1.04949 1.68172 1.21059 0.98371 0.82467 0.99286 1.21075 0.96575 1.01234 0.98084 1.21255 0.95482 0.96120 0.83207 0.89555 1.88816 1.48114 1.72344 1.22565 1.23762 0.89092 0.90979 0.99005 1.23317 1.03069 0.98373 0.94010 1.21181 1.01052 0.95290 0.97309 0.88185 1.20985 0.78825 1.01761 0.99844 0.90142 0.76676 0.89146 0.89627 0.87352 0.92954 0.88181 0.89623 0.92799 0.87929 0.87535 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.12 13.03 21.77 0.28 -47.84 16 2 C -0.01 -0.28 5.51 85.14 0.47 0.19 16 3 Si 1.01 40.24 29.56 68.60 2.03 42.26 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 6 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.34 -18.88 9.68 84.36 0.82 -18.06 16 8 H 0.10 5.76 7.15 -2.92 -0.02 5.73 16 9 N -0.51 -27.87 5.24 -308.87 -1.62 -29.49 16 10 C 0.39 19.79 7.60 87.08 0.66 20.45 16 11 O -0.60 -30.81 12.77 -3.71 -0.05 -30.85 16 12 C 0.51 23.02 7.68 87.08 0.67 23.69 16 13 O -0.57 -27.55 15.78 -3.52 -0.06 -27.61 16 14 N -0.58 -20.49 3.06 -840.98 -2.57 -23.07 16 15 C 0.11 3.05 6.40 85.91 0.55 3.60 16 16 C -0.13 -3.09 5.59 29.11 0.16 -2.93 16 17 C 0.10 2.16 3.52 29.11 0.10 2.26 16 18 H 0.09 1.52 8.12 -2.39 -0.02 1.50 16 19 O -0.40 -9.73 10.93 -148.98 -1.63 -11.36 16 20 C 0.05 0.90 7.77 72.88 0.57 1.47 16 21 C -0.15 -3.39 6.50 31.85 0.21 -3.19 16 22 C -0.13 -3.06 2.59 -12.39 -0.03 -3.09 16 23 H 0.10 1.86 8.02 -2.39 -0.02 1.84 16 24 C 0.11 3.43 5.10 85.28 0.44 3.86 16 25 H 0.29 14.14 8.30 -92.72 -0.77 13.37 16 26 H 0.40 22.28 7.37 -92.71 -0.68 21.60 16 27 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.09 2.64 6.86 -2.38 -0.02 2.62 16 29 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.46 7.94 -2.39 -0.02 1.44 16 31 H 0.10 1.68 8.14 -2.39 -0.02 1.67 16 32 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 34 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.11 4.13 4.57 -10.24 -0.05 4.08 16 36 H 0.07 2.04 8.13 -2.39 -0.02 2.02 16 Total: -1.00 -65.16 294.93 1.39 -63.77 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: 0.39 Total: 35.92 kcal Atomic # 6 Polarization: 23.66 SS G_CDS: 4.61 Total: 28.26 kcal Atomic # 7 Polarization: -96.49 SS G_CDS: -3.91 Total: -100.40 kcal Atomic # 8 Polarization: -68.09 SS G_CDS: -1.73 Total: -69.82 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.26 kcal Total: -65.16 1.39 -63.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724829403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.058 kcal (2) G-P(sol) polarization free energy of solvation -65.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds