Wall clock time and date at job start Mon Mar 30 2020 06:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47147 * 180.02562 * 9 7 2 11 11 C 1.42901 * 113.99948 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47084 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.46957 * 65.00223 * 12 11 10 14 14 C 1.34235 * 116.99845 * 179.97438 * 13 12 11 15 15 O 1.20824 * 120.00059 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99644 * 179.97438 * 14 13 12 17 17 H 1.09002 * 109.61771 * 59.64147 * 16 14 13 18 18 C 1.53295 * 109.61851 * 299.08897 * 16 14 13 19 19 C 1.52877 * 108.59062 * 165.82963 * 18 16 14 20 20 C 1.52077 * 110.51003 * 54.89337 * 19 18 16 21 21 H 1.09009 * 114.26324 * 193.76673 * 20 19 18 22 22 C 1.52304 * 119.84264 * 49.54898 * 20 19 18 23 23 C 1.52069 * 120.02280 * 338.29515 * 20 19 18 24 24 H 1.08996 * 116.54352 * 216.99463 * 23 20 19 25 25 C 1.52718 * 120.52041 * 5.29555 * 23 20 19 26 26 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 28 28 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 29 29 H 1.08995 * 109.47354 * 300.00131 * 11 10 9 30 30 H 1.09003 * 109.47182 * 59.99587 * 11 10 9 31 31 H 1.09001 * 109.46944 * 185.00182 * 12 11 10 32 32 H 1.08998 * 109.47273 * 305.00092 * 12 11 10 33 33 H 1.09003 * 109.62070 * 285.56283 * 18 16 14 34 34 H 1.09002 * 109.62033 * 46.10073 * 18 16 14 35 35 H 1.09001 * 109.27075 * 294.62865 * 19 18 16 36 36 H 1.08999 * 109.24346 * 175.13559 * 19 18 16 37 37 H 1.09000 * 117.53569 * 142.80177 * 22 20 19 38 38 H 1.08999 * 117.59910 * 357.53161 * 22 20 19 39 39 H 1.09000 * 109.35546 * 218.31824 * 25 23 20 40 40 H 1.08997 * 109.35552 * 98.73670 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 2.1796 -3.5853 -0.0015 11 6 1.5650 -4.8754 -0.0019 12 6 2.6480 -5.9562 -0.0023 13 8 3.3992 -5.8890 1.2385 14 6 4.3933 -6.7768 1.3979 15 8 4.6283 -7.5831 0.5291 16 6 5.2169 -6.7672 2.6598 17 1 4.5696 -6.9347 3.5206 18 6 5.9275 -5.4162 2.8003 19 6 6.4588 -5.2911 4.2284 20 6 7.3420 -6.4799 4.5743 21 1 7.5615 -6.5805 5.6373 22 6 8.4540 -6.9004 3.6223 23 6 7.2064 -7.7801 3.7974 24 1 7.3231 -8.7021 4.3667 25 6 6.2745 -7.8690 2.5908 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5575 0.8880 28 1 0.6246 -2.5563 -0.8919 29 1 0.9445 -4.9826 0.8877 30 1 0.9452 -4.9823 -0.8922 31 1 2.1820 -6.9374 -0.0922 32 1 3.3216 -5.7953 -0.8440 33 1 6.7572 -5.3639 2.0953 34 1 5.2225 -4.6093 2.6002 35 1 5.6192 -5.2528 4.9225 36 1 7.0404 -4.3735 4.3162 37 1 9.3863 -7.2549 4.0617 38 1 8.5543 -6.3483 2.6878 39 1 5.7829 -8.8418 2.5850 40 1 6.8560 -7.7549 1.6760 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817198933.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:31 Heat of formation + Delta-G solvation = -149.426870 kcal Electronic energy + Delta-G solvation = -20349.852956 eV Core-core repulsion = 17128.950979 eV Total energy + Delta-G solvation = -3220.901977 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.87262 -40.15106 -38.74143 -37.45500 -34.96020 -34.39049 -31.86761 -31.60999 -29.06413 -26.54255 -24.86697 -24.53957 -23.51159 -22.11248 -21.77851 -19.48083 -18.75727 -18.68944 -17.89082 -17.73732 -17.06479 -16.81975 -16.43098 -16.18474 -15.27990 -15.10692 -14.84723 -14.57078 -14.35641 -14.05923 -13.78595 -13.54954 -13.25476 -13.09554 -12.93439 -12.69593 -12.48106 -12.43172 -12.30074 -12.03084 -11.96921 -11.74855 -11.61962 -11.31187 -11.26760 -10.89504 -10.67057 -10.56298 -10.28521 -8.32736 -6.45220 1.10354 1.40388 1.44932 1.53390 1.63533 2.34221 2.83334 3.01286 3.04425 3.46438 3.68446 3.72845 3.90692 3.93898 3.97699 4.08008 4.14079 4.17655 4.38762 4.39295 4.48436 4.55023 4.59559 4.66277 4.70949 4.84060 4.93803 5.00164 5.08883 5.16161 5.20467 5.21459 5.31164 5.35458 5.36087 5.43807 5.53431 5.94161 6.48485 6.66891 6.78333 7.26462 8.79331 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.020402 B = 0.003912 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.111790 B = 7155.607340 C = 8236.606459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.060 0.940 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.054 3.946 12 C 0.076 3.924 13 O -0.356 6.356 14 C 0.462 3.538 15 O -0.539 6.539 16 C -0.073 4.073 17 H 0.128 0.872 18 C -0.115 4.115 19 C -0.086 4.086 20 C -0.138 4.138 21 H 0.118 0.882 22 C -0.184 4.184 23 C -0.149 4.149 24 H 0.122 0.878 25 C -0.069 4.069 26 H 0.272 0.728 27 H -0.010 1.010 28 H -0.009 1.009 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.759 -15.154 9.351 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.078 0.922 9 C 0.134 3.866 10 O -0.329 6.329 11 C -0.023 4.023 12 C 0.003 3.997 13 O -0.273 6.273 14 C 0.307 3.693 15 O -0.429 6.429 16 C -0.092 4.092 17 H 0.146 0.854 18 C -0.153 4.153 19 C -0.123 4.123 20 C -0.156 4.156 21 H 0.136 0.864 22 C -0.220 4.220 23 C -0.167 4.167 24 H 0.140 0.860 25 C -0.106 4.106 26 H 0.080 0.920 27 H 0.007 0.993 28 H 0.009 0.991 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.834 -15.238 9.065 21.888 hybrid contribution -0.415 0.655 -0.533 0.941 sum 12.419 -14.583 8.532 20.969 Atomic orbital electron populations 1.70057 1.07706 1.28779 1.50316 1.25934 0.95961 1.03293 0.93813 0.85254 0.78146 0.76761 0.79391 1.19106 1.19865 1.18942 1.21356 0.94093 0.90913 1.52569 0.92151 1.19867 0.88550 0.84371 0.93849 1.87860 1.35546 1.14189 1.95326 1.22636 0.94459 0.83342 1.01816 1.23184 0.93168 0.99159 0.84190 1.86601 1.44166 1.54961 1.41522 1.24421 0.78396 0.76800 0.89674 1.90610 1.68445 1.39155 1.44678 1.21214 0.96114 0.99235 0.92616 0.85449 1.21617 0.99841 0.94557 0.99302 1.20868 0.99236 0.97603 0.94563 1.21931 1.00500 0.94804 0.98408 0.86446 1.23201 0.93430 1.03802 1.01610 1.22214 0.99061 0.96106 0.99312 0.86004 1.20886 0.94977 0.97265 0.97516 0.91961 0.99266 0.99079 0.92483 0.90083 0.87416 0.91285 0.91721 0.91601 0.90109 0.90373 0.87492 0.89632 0.90445 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.65 13.29 21.45 0.28 -55.36 16 2 C 0.01 0.50 5.46 84.65 0.46 0.96 16 3 Si 0.98 44.23 29.54 68.60 2.03 46.26 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.55 -33.06 9.43 25.60 0.24 -32.82 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.21 11.73 5.69 71.24 0.41 12.14 16 10 O -0.41 -20.30 10.30 -145.57 -1.50 -21.80 16 11 C 0.05 2.00 6.33 71.98 0.46 2.45 16 12 C 0.08 2.45 5.84 71.98 0.42 2.87 16 13 O -0.36 -12.02 9.90 -48.82 -0.48 -12.51 16 14 C 0.46 13.80 7.25 71.24 0.52 14.31 16 15 O -0.54 -18.04 15.66 21.97 0.34 -17.69 16 16 C -0.07 -1.62 2.61 -11.48 -0.03 -1.65 16 17 H 0.13 2.40 8.05 -2.39 -0.02 2.38 16 18 C -0.12 -2.60 5.03 30.65 0.15 -2.44 16 19 C -0.09 -1.46 5.94 30.25 0.18 -1.28 16 20 C -0.14 -1.99 6.00 -11.64 -0.07 -2.06 16 21 H 0.12 1.32 8.14 -2.38 -0.02 1.31 16 22 C -0.18 -2.70 9.66 30.58 0.30 -2.41 16 23 C -0.15 -2.22 6.19 -10.98 -0.07 -2.29 16 24 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 25 C -0.07 -1.34 4.49 30.46 0.14 -1.20 16 26 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 27 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 28 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.11 2.78 8.13 -2.39 -0.02 2.76 16 32 H 0.07 2.30 8.13 -2.39 -0.02 2.28 16 33 H 0.06 1.49 7.11 -2.39 -0.02 1.47 16 34 H 0.07 1.79 7.83 -2.39 -0.02 1.77 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 1.45 7.26 -2.39 -0.02 1.44 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.06 1.38 7.84 -2.39 -0.02 1.36 16 Total: -1.00 -69.22 331.83 4.78 -64.44 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.00 Total: 10.08 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 3.10 Total: -13.42 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.28 Total: -55.36 kcal Atomic # 8 Polarization: -50.37 SS G_CDS: -1.64 Total: -52.00 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -69.22 4.78 -64.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817198933.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.982 kcal (2) G-P(sol) polarization free energy of solvation -69.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds