Wall clock time and date at job start Mon Mar 30 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47458 * 2 1 4 4 C 1.50703 * 109.46728 * 239.99434 * 2 1 3 5 5 H 1.07995 * 120.00592 * 245.55328 * 4 2 1 6 6 C 1.37885 * 119.99753 * 65.55605 * 4 2 1 7 7 N 1.31509 * 119.99955 * 192.20713 * 6 4 2 8 8 Si 1.86800 * 119.99830 * 12.20327 * 6 4 2 9 9 H 1.48503 * 109.47100 * 90.89888 * 8 6 4 10 10 H 1.48502 * 109.47076 * 210.89279 * 8 6 4 11 11 H 1.48499 * 109.47152 * 330.90056 * 8 6 4 12 12 C 1.50700 * 109.47088 * 120.00424 * 2 1 3 13 13 O 1.21275 * 120.00599 * 98.27990 * 12 2 1 14 14 N 1.34780 * 119.99786 * 278.27764 * 12 2 1 15 15 C 1.46820 * 120.12387 * 355.10465 * 14 12 2 16 16 C 1.53730 * 109.04840 * 236.26524 * 15 14 12 17 17 N 1.46948 * 107.38593 * 313.88875 * 16 15 14 18 18 C 1.33402 * 128.36520 * 233.38884 * 17 16 15 19 19 O 1.21504 * 123.19639 * 350.41347 * 18 17 16 20 20 O 1.33993 * 113.60386 * 170.45035 * 18 17 16 21 21 C 1.45836 * 109.47057 * 3.85346 * 20 18 17 22 22 C 1.47890 * 122.82415 * 51.95462 * 17 16 15 23 23 H 1.08993 * 111.64629 * 68.97452 * 22 17 16 24 24 C 1.47098 * 120.12871 * 175.07540 * 14 12 2 25 25 H 1.09009 * 109.46653 * 305.88499 * 1 2 3 26 26 H 1.08998 * 109.47310 * 65.87836 * 1 2 3 27 27 H 1.09002 * 109.47852 * 185.88444 * 1 2 3 28 28 H 0.97001 * 120.00052 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.54423 * 356.13058 * 15 14 12 30 30 H 1.08993 * 109.54548 * 116.39994 * 15 14 12 31 31 H 1.09006 * 109.87255 * 73.36323 * 16 15 14 32 32 H 1.09003 * 109.87060 * 194.34852 * 16 15 14 33 33 H 1.08998 * 110.52292 * 120.64160 * 21 20 18 34 34 H 1.09004 * 110.52320 * 243.23860 * 21 20 18 35 35 H 1.09001 * 109.74315 * 242.26234 * 24 14 12 36 36 H 1.08998 * 109.74261 * 2.97324 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7106 -1.2304 5 1 2.5771 -1.6380 -1.1339 6 6 1.7961 -0.1765 -2.4796 7 7 2.0152 -0.8996 -3.5559 8 14 1.1648 1.5740 -2.6428 9 1 2.3151 2.5064 -2.7558 10 1 0.3178 1.6835 -3.8576 11 1 0.3600 1.9237 -1.4448 12 6 2.0323 -0.7105 1.2304 13 8 2.3771 -1.8712 1.1622 14 7 2.0985 -0.0559 2.4067 15 6 1.7846 1.3769 2.4713 16 6 2.9834 2.1264 3.0751 17 7 3.4205 1.3739 4.2592 18 6 3.5959 1.8187 5.5046 19 8 3.5686 2.9969 5.8003 20 8 3.8058 0.8426 6.3983 21 6 3.8701 -0.4414 5.7097 22 6 3.7137 -0.0752 4.2250 23 1 4.6130 -0.2900 3.6479 24 6 2.4848 -0.7744 3.6308 25 1 -0.3633 0.6024 0.8327 26 1 -0.3634 0.4200 -0.9379 27 1 -0.3635 -1.0222 0.1054 28 1 1.8487 -0.5241 -4.4347 29 1 1.5880 1.7527 1.4673 30 1 0.9061 1.5299 3.0979 31 1 3.7937 2.1763 2.3477 32 1 2.6831 3.1334 3.3647 33 1 4.8327 -0.9215 5.8856 34 1 3.0559 -1.0898 6.0335 35 1 1.6639 -0.7485 4.3475 36 1 2.7305 -1.8084 3.3888 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830364081.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:59 Heat of formation + Delta-G solvation = -81.018162 kcal Electronic energy + Delta-G solvation = -21384.124384 eV Core-core repulsion = 18062.648488 eV Total energy + Delta-G solvation = -3321.475896 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.93544 -39.51515 -37.34840 -36.85418 -34.15867 -33.71171 -32.31825 -31.16992 -28.70307 -26.51899 -25.27256 -24.05911 -23.03387 -21.98007 -20.91981 -18.54578 -17.66708 -17.31096 -17.13380 -16.57718 -15.86286 -15.80996 -15.34448 -14.83892 -14.50974 -14.36180 -14.01738 -13.72105 -13.40950 -13.32419 -12.65977 -12.47325 -12.25774 -12.04871 -11.71097 -11.61533 -11.54486 -11.09104 -10.92348 -10.71778 -10.67016 -10.37961 -9.70553 -9.47048 -9.28303 -8.88613 -8.56505 -8.36596 -6.16708 -4.14930 2.22629 2.57537 3.09304 3.16328 3.23055 3.28564 3.30300 3.34647 3.99397 4.25833 4.30273 4.35043 4.73303 4.86036 4.96160 5.00608 5.10697 5.18699 5.26383 5.42332 5.51990 5.55079 5.73125 5.83476 6.07857 6.21285 6.29646 6.40191 6.59566 6.74974 7.09693 7.17536 7.42815 7.74519 7.87759 8.40722 8.82972 9.01831 9.43430 10.96067 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.031861 B = 0.005483 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.619958 B = 5105.131134 C = 5599.168783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.002 3.998 3 H 0.043 0.957 4 C -0.512 4.512 5 H 0.089 0.911 6 C 0.076 3.924 7 N -0.888 5.888 8 Si 0.860 3.140 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.252 1.252 12 C 0.534 3.466 13 O -0.527 6.527 14 N -0.629 5.629 15 C 0.091 3.909 16 C 0.131 3.869 17 N -0.624 5.624 18 C 0.647 3.353 19 O -0.528 6.528 20 O -0.331 6.331 21 C 0.049 3.951 22 C 0.075 3.925 23 H 0.112 0.888 24 C 0.106 3.894 25 H 0.028 0.972 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.265 0.735 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.071 0.929 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.499 3.563 15.355 15.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.019 4.019 3 H 0.061 0.939 4 C -0.550 4.550 5 H 0.107 0.893 6 C -0.127 4.127 7 N -0.525 5.525 8 Si 0.687 3.313 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.176 1.176 12 C 0.325 3.675 13 O -0.400 6.400 14 N -0.365 5.365 15 C -0.034 4.034 16 C 0.009 3.991 17 N -0.372 5.372 18 C 0.401 3.599 19 O -0.413 6.413 20 O -0.241 6.241 21 C -0.027 4.027 22 C -0.030 4.030 23 H 0.130 0.870 24 C -0.018 4.018 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.131 0.869 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.089 0.911 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.669 3.557 15.472 15.889 hybrid contribution -0.271 0.864 -0.382 0.982 sum 0.398 4.420 15.090 15.729 Atomic orbital electron populations 1.22153 0.96362 1.00925 1.00303 1.19246 0.93967 0.96601 0.92087 0.93934 1.20823 1.36790 1.09980 0.87413 0.89341 1.24943 0.94803 0.97300 0.95650 1.69931 1.48491 1.35998 0.98098 0.87300 0.79422 0.86112 0.78490 1.20416 1.21123 1.17588 1.21511 0.75408 0.87132 0.83476 1.90580 1.47222 1.17759 1.84450 1.48274 1.70999 1.09386 1.07889 1.22242 0.96398 0.81033 1.03683 1.22105 0.97409 0.95322 0.84229 1.48226 1.69922 1.10029 1.09050 1.18255 0.76424 0.85237 0.79943 1.91032 1.56677 1.12192 1.81412 1.87346 1.85911 1.17437 1.33408 1.24255 1.05602 0.83929 0.88873 1.23181 1.01242 0.81808 0.96803 0.86995 1.21913 0.94347 0.98239 0.87288 0.95320 0.91953 0.92881 0.92477 0.86929 0.91046 0.89821 0.87746 0.87123 0.87348 0.91057 0.87231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.32 37.16 0.31 -2.42 16 2 C 0.00 0.05 1.34 -92.92 -0.12 -0.07 16 3 H 0.04 0.85 4.96 -51.93 -0.26 0.59 16 4 C -0.51 -13.92 8.81 -34.44 -0.30 -14.23 16 5 H 0.09 2.77 7.17 -52.49 -0.38 2.40 16 6 C 0.08 2.07 5.37 -17.82 -0.10 1.98 16 7 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 8 Si 0.86 19.35 25.77 -169.99 -4.38 14.97 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.25 -5.02 5.33 56.52 0.30 -4.72 16 12 C 0.53 10.62 6.81 -10.98 -0.07 10.54 16 13 O -0.53 -12.35 15.08 5.56 0.08 -12.27 16 14 N -0.63 -9.29 2.92 -172.28 -0.50 -9.79 16 15 C 0.09 1.10 6.08 -3.49 -0.02 1.08 16 16 C 0.13 1.47 7.09 -3.42 -0.02 1.45 16 17 N -0.62 -7.48 2.98 -169.99 -0.51 -7.99 16 18 C 0.65 9.10 8.88 53.44 0.47 9.58 16 19 O -0.53 -9.27 17.64 -19.09 -0.34 -9.60 16 20 O -0.33 -4.00 11.10 -38.39 -0.43 -4.42 16 21 C 0.05 0.37 7.83 37.53 0.29 0.67 16 22 C 0.07 0.74 4.15 -66.60 -0.28 0.47 16 23 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 24 C 0.11 1.23 5.87 -3.53 -0.02 1.21 16 25 H 0.03 0.45 7.65 -51.92 -0.40 0.06 16 26 H 0.06 1.27 4.75 -51.93 -0.25 1.02 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.11 1.41 5.18 -51.93 -0.27 1.14 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.10 1.08 7.87 -51.93 -0.41 0.67 16 33 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.11 0.60 7.56 -51.93 -0.39 0.20 16 35 H 0.07 0.72 7.84 -51.93 -0.41 0.31 16 36 H 0.11 1.36 6.96 -51.93 -0.36 0.99 16 LS Contribution 288.51 15.07 4.35 4.35 Total: -1.00 -34.74 288.51 -5.28 -40.02 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -4.47 Total: 0.04 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 0.14 Total: 10.24 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: -0.24 Total: -43.33 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.68 Total: -26.29 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.38 Total: 14.97 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -34.74 -5.28 -40.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830364081.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.997 kcal (2) G-P(sol) polarization free energy of solvation -34.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds