Wall clock time and date at job start Mon Mar 30 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47458 * 2 1 4 4 C 1.50703 * 109.46728 * 239.99434 * 2 1 3 5 5 H 1.07995 * 120.00592 * 245.55328 * 4 2 1 6 6 C 1.37885 * 119.99753 * 65.55605 * 4 2 1 7 7 N 1.31509 * 119.99955 * 192.20713 * 6 4 2 8 8 Si 1.86800 * 119.99830 * 12.20327 * 6 4 2 9 9 H 1.48503 * 109.47100 * 90.89888 * 8 6 4 10 10 H 1.48502 * 109.47076 * 210.89279 * 8 6 4 11 11 H 1.48499 * 109.47152 * 330.90056 * 8 6 4 12 12 C 1.50700 * 109.47088 * 120.00424 * 2 1 3 13 13 O 1.21275 * 120.00599 * 98.27990 * 12 2 1 14 14 N 1.34780 * 119.99786 * 278.27764 * 12 2 1 15 15 C 1.46820 * 120.12387 * 355.10465 * 14 12 2 16 16 C 1.53730 * 109.04840 * 236.26524 * 15 14 12 17 17 N 1.46948 * 107.38593 * 313.88875 * 16 15 14 18 18 C 1.33402 * 128.36520 * 233.38884 * 17 16 15 19 19 O 1.21504 * 123.19639 * 350.41347 * 18 17 16 20 20 O 1.33993 * 113.60386 * 170.45035 * 18 17 16 21 21 C 1.45836 * 109.47057 * 3.85346 * 20 18 17 22 22 C 1.47890 * 122.82415 * 51.95462 * 17 16 15 23 23 H 1.08993 * 111.64629 * 68.97452 * 22 17 16 24 24 C 1.47098 * 120.12871 * 175.07540 * 14 12 2 25 25 H 1.09009 * 109.46653 * 305.88499 * 1 2 3 26 26 H 1.08998 * 109.47310 * 65.87836 * 1 2 3 27 27 H 1.09002 * 109.47852 * 185.88444 * 1 2 3 28 28 H 0.97001 * 120.00052 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.54423 * 356.13058 * 15 14 12 30 30 H 1.08993 * 109.54548 * 116.39994 * 15 14 12 31 31 H 1.09006 * 109.87255 * 73.36323 * 16 15 14 32 32 H 1.09003 * 109.87060 * 194.34852 * 16 15 14 33 33 H 1.08998 * 110.52292 * 120.64160 * 21 20 18 34 34 H 1.09004 * 110.52320 * 243.23860 * 21 20 18 35 35 H 1.09001 * 109.74315 * 242.26234 * 24 14 12 36 36 H 1.08998 * 109.74261 * 2.97324 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7106 -1.2304 5 1 2.5771 -1.6380 -1.1339 6 6 1.7961 -0.1765 -2.4796 7 7 2.0152 -0.8996 -3.5559 8 14 1.1648 1.5740 -2.6428 9 1 2.3151 2.5064 -2.7558 10 1 0.3178 1.6835 -3.8576 11 1 0.3600 1.9237 -1.4448 12 6 2.0323 -0.7105 1.2304 13 8 2.3771 -1.8712 1.1622 14 7 2.0985 -0.0559 2.4067 15 6 1.7846 1.3769 2.4713 16 6 2.9834 2.1264 3.0751 17 7 3.4205 1.3739 4.2592 18 6 3.5959 1.8187 5.5046 19 8 3.5686 2.9969 5.8003 20 8 3.8058 0.8426 6.3983 21 6 3.8701 -0.4414 5.7097 22 6 3.7137 -0.0752 4.2250 23 1 4.6130 -0.2900 3.6479 24 6 2.4848 -0.7744 3.6308 25 1 -0.3633 0.6024 0.8327 26 1 -0.3634 0.4200 -0.9379 27 1 -0.3635 -1.0222 0.1054 28 1 1.8487 -0.5241 -4.4347 29 1 1.5880 1.7527 1.4673 30 1 0.9061 1.5299 3.0979 31 1 3.7937 2.1763 2.3477 32 1 2.6831 3.1334 3.3647 33 1 4.8327 -0.9215 5.8856 34 1 3.0559 -1.0898 6.0335 35 1 1.6639 -0.7485 4.3475 36 1 2.7305 -1.8084 3.3888 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830364081.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:59 Heat of formation + Delta-G solvation = -107.724467 kcal Electronic energy + Delta-G solvation = -21385.282457 eV Core-core repulsion = 18062.648488 eV Total energy + Delta-G solvation = -3322.633969 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.87590 -40.90319 -38.44560 -38.00869 -35.86286 -34.99706 -33.53549 -32.79830 -29.67345 -27.54865 -27.15165 -25.06013 -24.40233 -23.03111 -22.05653 -19.87037 -19.00497 -18.53518 -18.28187 -17.69663 -17.25709 -17.20727 -16.42357 -16.16794 -15.94075 -15.27501 -15.03442 -14.93230 -14.80284 -14.49701 -14.25752 -14.02588 -13.45583 -13.25333 -12.96610 -12.83068 -12.61180 -12.54565 -12.45437 -12.15784 -11.78247 -11.72535 -11.38801 -11.24570 -10.63537 -10.55619 -10.42607 -9.50352 -8.26086 -6.31168 1.29194 1.41293 1.43655 1.53245 1.54035 1.80244 2.00184 2.39648 2.50552 3.07818 3.21343 3.37910 3.53389 3.89360 3.96494 4.00212 4.10484 4.36618 4.40470 4.48986 4.56965 4.60048 4.69866 4.71087 4.74112 4.85261 4.90936 5.09117 5.28608 5.46216 5.53077 5.60817 6.18407 6.25094 6.45223 6.80940 6.85810 7.27285 7.39113 8.91430 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.031861 B = 0.005483 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.619958 B = 5105.131134 C = 5599.168783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.002 4.002 3 H 0.071 0.929 4 C -0.523 4.523 5 H 0.024 0.976 6 C 0.011 3.989 7 N -0.949 5.949 8 Si 0.933 3.067 9 H -0.271 1.271 10 H -0.292 1.292 11 H -0.201 1.201 12 C 0.533 3.467 13 O -0.577 6.577 14 N -0.619 5.619 15 C 0.087 3.913 16 C 0.130 3.870 17 N -0.622 5.622 18 C 0.648 3.352 19 O -0.570 6.570 20 O -0.341 6.341 21 C 0.052 3.948 22 C 0.079 3.921 23 H 0.113 0.887 24 C 0.104 3.896 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.034 0.966 28 H 0.266 0.734 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.097 0.903 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.617 5.741 17.574 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 H 0.089 0.911 4 C -0.561 4.561 5 H 0.042 0.958 6 C -0.186 4.186 7 N -0.588 5.588 8 Si 0.755 3.245 9 H -0.197 1.197 10 H -0.218 1.218 11 H -0.123 1.123 12 C 0.324 3.676 13 O -0.455 6.455 14 N -0.353 5.353 15 C -0.036 4.036 16 C 0.009 3.991 17 N -0.369 5.369 18 C 0.403 3.597 19 O -0.459 6.459 20 O -0.251 6.251 21 C -0.022 4.022 22 C -0.026 4.026 23 H 0.130 0.870 24 C -0.019 4.019 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.132 0.868 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.135 0.865 33 H 0.158 0.842 34 H 0.154 0.846 35 H 0.115 0.885 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.448 5.739 17.759 18.669 hybrid contribution 0.145 0.036 -1.029 1.040 sum -0.303 5.775 16.730 17.701 Atomic orbital electron populations 1.22051 0.94401 1.00906 1.01936 1.19212 0.95423 0.97232 0.90480 0.91124 1.20988 1.36250 1.08334 0.90502 0.95752 1.26000 0.95079 1.02759 0.94725 1.70125 1.50935 1.38827 0.98943 0.86139 0.79449 0.78821 0.80102 1.19681 1.21780 1.12284 1.21184 0.75316 0.86456 0.84677 1.90566 1.49688 1.19861 1.85428 1.48154 1.69349 1.10558 1.07275 1.22471 0.97680 0.78984 1.04427 1.22166 0.97154 0.95798 0.83973 1.48298 1.69160 1.10791 1.08619 1.18309 0.75991 0.85009 0.80414 1.90995 1.58610 1.14121 1.82169 1.87329 1.85566 1.18555 1.33620 1.24622 1.08560 0.82458 0.86550 1.23238 1.00367 0.80492 0.98509 0.86961 1.22138 0.95956 0.97570 0.86228 0.90599 0.92449 0.94638 0.92503 0.86765 0.88570 0.89746 0.86507 0.84201 0.84624 0.88528 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 8.32 71.98 0.60 -4.30 16 2 C 0.00 -0.08 1.34 -12.29 -0.02 -0.10 16 3 H 0.07 2.56 4.96 -2.39 -0.01 2.54 16 4 C -0.52 -29.36 8.81 25.60 0.23 -29.14 16 5 H 0.02 1.63 7.17 -2.91 -0.02 1.61 16 6 C 0.01 0.64 5.37 84.66 0.45 1.09 16 7 N -0.95 -58.75 13.96 21.45 0.30 -58.45 16 8 Si 0.93 38.96 25.77 68.60 1.77 40.72 16 9 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 10 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.20 -6.73 5.33 99.48 0.53 -6.20 16 12 C 0.53 20.82 6.81 87.66 0.60 21.42 16 13 O -0.58 -27.94 15.08 -3.02 -0.05 -27.99 16 14 N -0.62 -16.67 2.92 -817.37 -2.38 -19.05 16 15 C 0.09 1.76 6.08 86.56 0.53 2.28 16 16 C 0.13 2.50 7.09 86.54 0.61 3.12 16 17 N -0.62 -13.07 2.98 -923.99 -2.76 -15.82 16 18 C 0.65 16.67 8.88 130.00 1.15 17.83 16 19 O -0.57 -19.16 17.64 19.65 0.35 -18.82 16 20 O -0.34 -7.25 11.10 -49.40 -0.55 -7.80 16 21 C 0.05 0.60 7.83 72.23 0.57 1.17 16 22 C 0.08 1.33 4.15 45.09 0.19 1.52 16 23 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 24 C 0.10 2.12 5.87 86.39 0.51 2.63 16 25 H 0.08 2.03 7.65 -2.38 -0.02 2.01 16 26 H 0.06 2.12 4.75 -2.39 -0.01 2.11 16 27 H 0.03 1.38 8.14 -2.39 -0.02 1.37 16 28 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 29 H 0.11 2.30 5.18 -2.39 -0.01 2.29 16 30 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.12 2.02 7.87 -2.39 -0.02 2.01 16 33 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.14 0.87 7.56 -2.39 -0.02 0.86 16 35 H 0.10 1.54 7.84 -2.39 -0.02 1.52 16 36 H 0.10 2.31 6.96 -2.39 -0.02 2.30 16 Total: -1.00 -81.86 288.51 3.03 -78.84 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.93 Total: 10.84 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 5.41 Total: 17.52 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -4.84 Total: -93.32 kcal Atomic # 8 Polarization: -54.35 SS G_CDS: -0.25 Total: -54.60 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 1.77 Total: 40.72 kcal Total: -81.86 3.03 -78.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830364081.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.885 kcal (2) G-P(sol) polarization free energy of solvation -81.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds