Wall clock time and date at job start Mon Mar 30 2020 06:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 5 5 C 1.34777 * 120.00258 * 275.00436 * 4 2 1 6 6 N 1.34784 * 119.99908 * 179.97438 * 5 4 2 7 7 O 1.21579 * 119.99978 * 359.97438 * 5 4 2 8 8 C 1.50694 * 109.47384 * 239.99869 * 2 1 3 9 9 N 1.29948 * 126.28671 * 285.02918 * 8 2 1 10 10 O 1.21303 * 110.25093 * 179.97438 * 9 8 2 11 11 C 1.33637 * 109.81010 * 359.97438 * 10 9 8 12 12 C 1.50707 * 126.55133 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47326 * 269.98268 * 12 11 10 14 14 C 1.52993 * 109.47068 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47070 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99935 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99937 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00037 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99993 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47284 * 59.99643 * 19 17 15 21 21 H 1.48496 * 109.47388 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47016 * 299.99898 * 19 17 15 23 23 N 1.31133 * 106.89856 * 359.77207 * 11 10 9 24 24 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 25 25 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 27 27 H 0.96999 * 119.99694 * 94.99826 * 4 2 1 28 28 H 0.97000 * 119.99339 * 179.97438 * 6 5 4 29 29 H 0.96995 * 120.00015 * 359.72369 * 6 5 4 30 30 H 1.09004 * 109.46397 * 29.97956 * 12 11 10 31 31 H 1.09001 * 109.47110 * 149.97293 * 12 11 10 32 32 H 1.09001 * 109.46681 * 299.99470 * 13 12 11 33 33 H 1.09001 * 109.47306 * 59.99359 * 13 12 11 34 34 H 1.09003 * 109.47439 * 299.99848 * 14 13 12 35 35 H 1.09001 * 109.47399 * 59.99638 * 14 13 12 36 36 H 0.97006 * 119.99706 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 7 2.5958 -0.6536 3.4578 7 8 1.8582 1.1616 2.4116 8 6 2.0324 -0.7104 -1.2304 9 7 2.0327 -1.9943 -1.4309 10 8 2.5028 -2.2491 -2.5197 11 6 2.8572 -1.1176 -3.1360 12 6 3.4788 -0.9972 -4.5036 13 6 5.0028 -1.0467 -4.3774 14 6 5.6337 -0.9252 -5.7659 15 6 7.1348 -0.9733 -5.6414 16 1 7.5930 -1.0795 -4.6692 17 6 7.9233 -0.8807 -6.7687 18 7 7.3655 -0.7509 -7.9526 19 14 9.7841 -0.9396 -6.6145 20 1 10.1891 -2.2285 -5.9982 21 1 10.3965 -0.8218 -7.9621 22 1 10.2457 0.1841 -5.7604 23 7 2.5568 -0.1317 -2.3253 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.2490 -1.6316 1.1527 28 1 2.6887 -0.1695 4.2932 29 1 2.8224 -1.5957 3.4153 30 1 3.1393 -1.8216 -5.1308 31 1 3.1821 -0.0508 -4.9556 32 1 5.3423 -0.2224 -3.7502 33 1 5.2994 -1.9932 -3.9254 34 1 5.2942 -1.7497 -6.3928 35 1 5.3371 0.0211 -6.2182 36 1 7.9203 -0.6854 -8.7456 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118390620.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:17 Heat of formation + Delta-G solvation = 15.197160 kcal Electronic energy + Delta-G solvation = -19600.242579 eV Core-core repulsion = 16315.231643 eV Total energy + Delta-G solvation = -3285.010936 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.57280 -40.21644 -36.81545 -35.70880 -34.53284 -33.98626 -32.83294 -31.31358 -30.27051 -27.82561 -25.28902 -24.34549 -23.04356 -21.91551 -20.70373 -20.30652 -18.89185 -17.97544 -17.76896 -17.09554 -16.35382 -15.73755 -15.24750 -14.94648 -14.72424 -14.49182 -14.08701 -14.04102 -13.41416 -12.68073 -12.65353 -12.46896 -12.14433 -11.74284 -11.56619 -11.47098 -11.03580 -10.93674 -10.86597 -10.63602 -10.62482 -10.03371 -9.99476 -9.87412 -9.49316 -9.44557 -9.17129 -8.40239 -6.05681 -4.08388 1.14857 2.06683 2.58893 2.87457 2.91081 3.31191 3.35802 3.38299 3.46790 3.97798 4.21208 4.42310 4.76276 4.84398 5.11749 5.30596 5.34281 5.45114 5.55704 5.57283 5.61947 5.85464 5.96660 6.03039 6.07106 6.34421 6.43898 6.57607 6.58384 6.90473 7.57155 7.58055 7.68699 7.92439 8.14543 8.28568 8.33779 8.97521 9.56177 11.05530 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.026493 B = 0.003231 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.644064 B = 8664.581852 C = 9301.597134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.259 3.741 3 H 0.120 0.880 4 N -0.738 5.738 5 C 0.711 3.289 6 N -0.866 5.866 7 O -0.590 6.590 8 C 0.157 3.843 9 N -0.387 5.387 10 O 0.076 5.924 11 C 0.212 3.788 12 C -0.034 4.034 13 C -0.107 4.107 14 C 0.023 3.977 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 N -0.481 5.481 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.402 0.598 28 H 0.416 0.584 29 H 0.398 0.602 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.021 0.979 35 H 0.021 0.979 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.820 -3.032 16.901 21.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.151 3.849 3 H 0.138 0.862 4 N -0.396 5.396 5 C 0.409 3.591 6 N -0.434 5.434 7 O -0.468 6.468 8 C -0.117 4.117 9 N -0.097 5.097 10 O 0.018 5.982 11 C -0.007 4.007 12 C -0.073 4.073 13 C -0.145 4.145 14 C -0.014 4.014 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 N -0.215 5.215 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.236 0.764 28 H 0.248 0.752 29 H 0.226 0.774 30 H 0.119 0.881 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.409 -2.145 17.296 21.989 hybrid contribution 1.434 -0.864 0.158 1.682 sum -11.975 -3.009 17.453 21.379 Atomic orbital electron populations 1.22184 0.92834 1.02991 1.03693 1.18784 0.94227 0.95850 0.76006 0.86204 1.45065 1.71886 1.14020 1.08612 1.15834 0.77931 0.84853 0.80481 1.42947 1.73498 1.14888 1.12038 1.90988 1.57095 1.14130 1.84564 1.25713 1.00541 0.87696 0.97777 1.74493 1.17814 1.17604 0.99760 1.85288 1.56278 1.35471 1.21171 1.29426 0.93188 0.79117 0.99010 1.20711 0.97748 1.05623 0.83241 1.21747 0.88560 1.01539 1.02696 1.19097 0.95216 0.97722 0.89327 1.21156 0.91472 1.50532 0.93068 0.92692 1.25000 0.98776 0.95163 0.95362 1.69940 1.35498 1.49989 0.97918 0.86645 0.85492 0.78657 0.77147 1.20226 1.21243 1.20204 1.71936 1.17443 1.30230 1.01860 0.90790 0.91902 0.90416 0.76395 0.75151 0.77443 0.88089 0.87230 0.92300 0.92541 0.96051 0.96036 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.47 37.16 0.35 -1.24 16 2 C 0.26 3.09 3.12 -69.09 -0.22 2.87 16 3 H 0.12 1.60 7.58 -51.93 -0.39 1.21 16 4 N -0.74 -7.61 5.07 -59.82 -0.30 -7.92 16 5 C 0.71 7.85 8.80 -86.91 -0.77 7.09 16 6 N -0.87 -5.67 8.88 27.63 0.25 -5.42 16 7 O -0.59 -8.94 16.84 5.30 0.09 -8.85 16 8 C 0.16 2.18 7.01 -156.38 -1.10 1.08 16 9 N -0.39 -5.41 11.86 30.90 0.37 -5.04 16 10 O 0.08 1.10 11.31 18.11 0.20 1.31 16 11 C 0.21 3.15 7.77 -13.05 -0.10 3.05 16 12 C -0.03 -0.50 5.84 -27.88 -0.16 -0.66 16 13 C -0.11 -1.99 5.13 -26.74 -0.14 -2.13 16 14 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 15 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 19 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 N -0.48 -7.52 11.55 -9.87 -0.11 -7.63 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.40 3.53 8.37 -40.82 -0.34 3.19 16 28 H 0.42 2.23 8.93 -40.82 -0.36 1.87 16 29 H 0.40 1.50 8.84 -40.82 -0.36 1.14 16 30 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 319.39 15.07 4.81 4.81 Total: -1.00 -32.73 319.39 -6.47 -39.19 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -4.81 Total: 1.22 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -2.68 Total: -2.57 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.93 Total: -51.29 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: 0.29 Total: -7.54 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.73 -6.47 -39.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118390620.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.390 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds